Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0369000 | OGI:04058370 | 11/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:17913242-17914650 | ||||||||
| Gene Symbol | RLCK144, OsRLCK144 | ||||||||||
| DNA seq | CAATAAAAAAACCAACTGCACATAAACACATTAAACAAATGCCCGCACATATGCGTGGGCTATCTTCCTAGTTTCACAAAAGTCATATATATAAATCACGAGGCTGTTAAGACGCAAATGTCGACGGATCGGACATTATTCGGACTAGCTAGCGGATCTCTGATACATGAGGACAGACAGCTGCGTATAAATCGCTTAACTGCTAGGAGGTAGAGGCAGTGCGATATAGACAACCGGCAGCCTCATCGTCTCCCCATCCACCGCCTTGCCCATCAGCTTTTCGAAGTCTTCCGCAAAGTCGTCGTCGGCGCTGCCCTCCACCCTCTTGCTCCGCAGGAGGAACGAGTCGTCGCGCTGCAAGTTGGTCGGCGCGCTCGCCTGCGCTCGCGACGTCGCGACGATGTACCGCCTGGACCGCGGCTGCACGACGCCCCTGTCCGGCACCGCGCGGTACTTGGACTCGTCCACCTGCACGGCGAACGCCACGCGATCGGCGGACCTGTTCGTCAGCTGCAGCACGCAGGATACATCCCTGTCCTTCTCAAATGGGAAGCGCACCTCCAGAGGGTCGATCACAAGGCGCTCCGATTTACACCCAGCTGAGCTCTGTCACAACGATCAGAGGGATCATACTATATACTCAAGAAGAAACCTAGCTTGCCATACATACTAGTCCCTGTGTCTAGGCTTAATTTGGTATTCAGTCACTTGTCACTTCGTAGTTTATACAGTCGCTACAGGGGAAACGTTTTTTTTCCCGGTTTACAACCACATTTACTACCGGTGGTAGCAACCGAGATGAGCAAATTGGGATTAAAGATGTCGATCTTTAGTACCGGTTAAAACTAAAAATGCATATAGCAAGAGAAAAAAAATATGTGGGATGTAGGATTCAAACTCAAGATCTCTCACCTTATCTCTCACGCGTATAACCATCTCACCAACTATATTTACACATCTGACTTGAATAGAGACGTTTTCCTTTTGACCTAACTCTGGAGGCATTTTTAGTACCGGTTAGTAACATCAACCGAGACTAAAGTTGTTTATAGGGAATTGGACTTTTAGAACCGGTAGTAAAGCAACTTTAATACCGGTTTTTAATCTACGAAAGATCGGTTCTCTATTAGTGAGTTAGCAAAACTGAGTAACAAAATGTGGAACCTTGCCAGAATCTCTCTTAGGCCTTTTTCAGTTAATCCTAAGTGCATGTACAACGGTTTTTATTAGTGGTCTCTCTCTATTGCCATGCAAGTAATTTGATGACATGGAAGAAAGAGAAAGGAGTATGGTTGTTATGCATGACAACGGCTCAGAGTCGACTCTTAGCATTTATTAGAGTAAATTTTGTTGCATGATAGTGAAAGAAAGGAAAGAAGAGAAAAAAAAAGTATTTGGATACATTAATG
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| CDS seq | CAGAGCTCAGCTGGGTGTAAATCGGAGCGCCTTGTGATCGACCCTCTGGAGGTGCGCTTCCCATTTGAGAAGGACAGGGATGTATCCTGCGTGCTGCAGCTGACGAACAGGTCCGCCGATCGCGTGGCGTTCGCCGTGCAGGTGGACGAGTCCAAGTACCGCGCGGTGCCGGACAGGGGCGTCGTGCAGCCGCGGTCCAGGCGGTACATCGTCGCGACGTCGCGAGCGCAGGCGAGCGCGCCGACCAACTTGCAGCGCGACGACTCGTTCCTCCTGCGGAGCAAGAGGGTGGAGGGCAGCGCCGACGACGACTTTGCGGAAGACTTCGAAAAGCTGATGGGCAAGGCGGTGGATGGGGAGACGATGAGGCTGCCGGTTGTCTATATCGCACTGCCTCTACCTCCTAGCAGTTAA
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| Protein seq | QSSAGCKSERLVIDPLEVRFPFEKDRDVSCVLQLTNRSADRVAFAVQVDESKYRAVPDRGVVQPRSRRYIVATSRAQASAPTNLQRDDSFLLRSKRVEGSADDDFAEDFEKLMGKAVDGETMRLPVVYIALPLPPSS |
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| Function | Vesicle-associated protein 1-2 [UniProtKB/Swiss-Prot:Q9SHC8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0369000 | Os04t0369000-01 | Chr04 | 17913242 | 17914650 | - | irgsp1_rep | ||
| CDS seq | CAGAGCTCAGCTGGGTGTAAATCGGAGCGCCTTGTGATCGACCCTCTGGAGGTGCGCTTCCCATTTGAGAAGGACAGGGATGTATCCTGCGTGCTGCAGCTGACGAACAGGTCCGCCGATCGCGTGGCGTTCGCCGTGCAGGTGGACGAGTCCAAGTACCGCGCGGTGCCGGACAGGGGCGTCGTGCAGCCGCGGTCCAGGCGGTACATCGTCGCGACGTCGCGAGCGCAGGCGAGCGCGCCGACCAACTTGCAGCGCGACGACTCGTTCCTCCTGCGGAGCAAGAGGGTGGAGGGCAGCGCCGACGACGACTTTGCGGAAGACTTCGAAAAGCTGATGGGCAAGGCGGTGGATGGGGAGACGATGAGGCTGCCGGTTGTCTATATCGCACTGCCTCTACCTCCTAGCAGTTAA
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| Protein seq | QSSAGCKSERLVIDPLEVRFPFEKDRDVSCVLQLTNRSADRVAFAVQVDESKYRAVPDRGVVQPRSRRYIVATSRAQASAPTNLQRDDSFLLRSKRVEGSADDDFAEDFEKLMGKAVDGETMRLPVVYIALPLPPSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0369000 | RBH | 0.218028 | 0.0 | 0.234190 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g30030 | RBH | 0.000000 | 0.0 | 0.065008 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009950 | RBH | 0.0 | 0.0 | 0.674895 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010710 | RBH | 0.000000 | 0.0 | 0.316431 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010510 | RBH | 0.0 | 0.0 | 4.363688 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010110 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010340 | RBH | 0.462691 | 0.000000 | 2.106792 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010000 | RBH | 0.069876 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0281300 | RBH | 0.0447695 | 0.006094 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0020900 | SBH | 0.341166 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010190 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010740 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010270 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009410 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009440 | RBH | 0.0 | 0.0 | 0.000000 |
