Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0020900 | OGI:04080330 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:28177661-28180855 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctgattattttaaaagttagctattgaaccagactcatttgctccgaaacataactgaacataaccacgtcttctgtctttgcaatacataggacaaacgtatcagaatcaggcaatcaggacactagtaaattgaaagcaagtttacagttgtaccaacagataccgatgcgcaaacttcttaactgcataagctctccaagctcgcgactaacttgcaacttagtgttaaggagatgagttattgactgtgtatggtagccagccaatctgaagcacgcaattacagaatataccagatcctaggatgaatttgctatgcggactgcggtagtgtagaacatgtgagcaaacgcatcagaaaatgcagacaacaaatcaattcttaagaaagaaaaggcctaacgaaacagaactagacaagctcatctatctcttcatgatataCcccagtagaattcccagaagagcaacgaccaccacgaacacaaaagggaaaccaccattctgcttgctaatttccctcctcacaaggtcctgttaagattcaaaagaaatgcttgattacaacaatttcatggttttatgtgcacaaataaaatacaacaagtatttcccttatagcaacactgcataaagcagtacggaaaccttttgtgatgcaacattgtcatcgccaaaatgatgagaggcaaaaaggagtacagatttaggtgagagcataatatattttttaaaaaaaaggaagtatgaagtagaaaattatatatttttacataaataataacaaattaaacaaaatatcaacctttatcacagtaggaataaattacttatacaatgaaagagtagagcatgcgacaaaatgtttccataagggcagtatctactaaccatctcctcgagaagcttattgttctgctgaatagcagagtttctttcttctgtcaatcttgaaatcaaagcagatgtctacacataggataaaagaaattaatgaggcattattcgtgtcagtacaaggcaagcgaaagATactttgctggccaatatggctgaggagtgaacagtgttaaatgttgaaaaggacaacacattaactgctttgtaatgaaagcctagtgccataaaacaaataaccaatgtcgAaaaaaaaaatgttccactctgtaacaggtaatttatgtgcatttgcacgtagagcaaaaataattgctacagagagtagaaaggaccaatttcaaaacaaaatgacgaattgacaacaaataaggtgtcaactgaaatgaacttttgaacttatacgtagttgggcttgaccaatgatCccttaacatataacaaaccactgtgcaaatatccagcattacaatgagaagtacatactgcaattacaagtatcaatcagcACAacaacatctactccatcttgcttgtatcagtattactttgttttctacgttacaggtgccaagcaaactttaccaagctcaggtctcattgaaattttaattgtaatcattgactgtaaaagacatttatatttaaagctgtaaaacaaattggcaagttttattggggtactgttgaccatcagatccatgccatgtttttgttgaaatagtcaagtctcaaaggcacttgatatttacttcaatagaagattgaaatgcaatgtttgctaagagatcactgaaacctatttacataagtactgttgtttcctttacttctatgtaaagttacaagtgaacatagaaaacttatttggagtgactcacctcagaatcagatgttacaTCTtctgcatccttgtgtgctcttgtagcctggaaaaataactactactcagtttaactcgtctttgaaaagagcagaatggggaagtgcatataaaagttaaggtactaacagatagcaatggtggctcatcagattcccgagttgtctgcgtctaaaaacaatcagtcatatccacacgaattaaagaaaaacaaggaaatgaaacaatgcataatcagacatctcacatcttgataattcaagttgcccccttctgataatgaagcccgaggagacgagccttcttcagatccctcacgcacgggggatggtggtcgtggtggttggacatagacaaccttcaacttcctctcatccaccacattacctgatcctttgttaaactagaaaaggtacacatgttggcatcataggaactaggaagttagaaacaaacatcaagcaacataatcaagaatcaaccatctgatagacattagaacatgaactaccatctctccagtgacatccttggttgttgtgccttcagtcaccacaacgctctgcactagaaacttgtctttgcactgcatgtctgctggtgcctcccgttgggcttgcattgttactaaggaaatgcagagaactgtcaattttttgcacacagataacaggacgaggaaaatatcccaacgttttgcatgaaggagatgagaattgagcataaccgatgacatcgctggtggaccgtggcggcacaatgccactgttcggcctgacgcagtacttctttgggctagttgtcttgacctaaggagcacaacatttcaccaaatttagcgttagcgcgtcaaatctcattaactttttttcTTTTttttttttgcagaattcccaagctctatgctccgtgaaaccaaattgctgaatttcttcgtgggggaaaaagattccagttaccttaaaggcgatgtagtcatctgttctgttcgtcagctgcatggagcatgagatctgcttcttcgtctcgactgctcaatccaaacagcaaaagaatcagcaaaaacaaacaaaaccccagcggcatgtggctccggaatttcacaagcagggaatttccggcgaggaaaccgtacaggagaaccggagctcgagcggctcgatcccgagcaactccttggagtcggagcccatctgccgccagccaacccactcgaaccgaagaggggaatgctcgctcgaactcgagatgcgcttgatccggagcggggagctagtagtagctagggtttgggtttgggggagtgagtgagtgatgagtgggtttccgtgcttgcttgcctggaggagcggacgggaattttggagtcgcggatgggaagagcacgagggaatgtcgggttggtgtgtgat
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| CDS seq | atgggctccgactccaaggagttgctcgggatcgagccgctcgagctccggttctccttcgagacgaagaagcagatctcatgctccatgcagctgacgaacagaacagatgactacatcgcctttaaggtcaagacaactagcccaaagaagtactgcgtcaggccgaacagtggcattgtgccgccacggtccaccagcgatgtcatcgtaacaatgcaagcccaacgggaggcaccagcagacatgcagtgcaaagacaagtttctagtgcagagcgttgtggtgactgaaggcacaacaaccaaggatgtcactggagagatgtttaacaaaggatcaggtaatgtggtggatgagaggaagttgaaggttgtctatgtccaaccaccacgaccaccatcccccgtgcgtgagggatctgaagaaggctcgtctcctcgggcttcattatcagaagggggcaacttgaattatcaagatacgcagacaactcgggaatctgatgagccaccattgctatctgctacaagagcacacaaggatgcagaAGAtgtaacatctgattctgagacatctgctttgatttcaagattgacagaagaaagaaactctgctattcagcagaacaataagcttctcgaggagatggaccttgtgaggagggaaattagcaagcagaatggtggtttcccttttgtgttcgtggtggtcgttgctcttctgggaattctactgggGtatatcatgaagagatag
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| Protein seq | MGSDSKELLGIEPLELRFSFETKKQISCSMQLTNRTDDYIAFKVKTTSPKKYCVRPNSGIVPPRSTSDVIVTMQAQREAPADMQCKDKFLVQSVVVTEGTTTKDVTGEMFNKGSGNVVDERKLKVVYVQPPRPPSPVREGSEEGSSPRASLSEGGNLNYQDTQTTRESDEPPLLSATRAHKDAEDVTSDSETSALISRLTEERNSAIQQNNKLLEEMDLVRREISKQNGGFPFVFVVVVALLGILLGYIMKR |
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| Function | Vesicle-associated protein 1-2 [UniProtKB/Swiss-Prot:Q9SHC8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0020900 | OsLima_04g0020900.02 | Chr04 | 28177661 | 28180855 | - | NAM | ||
| CDS seq | atgcagctgacgaacagaacagatgactacatcgcctttaaggtcaagacaactagcccaaagaagtactgcgtcaggccgaacagtggcattgtgccgccacggtccaccagcgatgtcatcgtaacaatgcaagcccaacgggaggcaccagcagacatgcagtgcaaagacaagtttctagtgcagagcgttgtggtgactgaaggcacaacaaccaaggatgtcactggagagatgtttaacaaaggatcaggtaatgtggtggatgagaggaagttgaaggttgtctatgtccaaccaccacgaccaccatcccccgtgcgtgagggatctgaagaaggctcgtctcctcgggcttcattatcagaagggggcaacttgaattatcaagatacaactcgggaatctgatgagccaccattgctatctgctacaagagcacacaaggatgcagaAGAtgtaacatctgattctgagacatctgctttgatttcaagattgacagaagaaagaaactctgctattcagcagaacaataagcttctcgaggagatggaccttgtgaggagggaaattagcaagcagaatggtggtttcccttttgtgttcgtggtggtcgttgctcttctgggaattctactgggGtatatcatgaagagatag
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| Protein seq | MQLTNRTDDYIAFKVKTTSPKKYCVRPNSGIVPPRSTSDVIVTMQAQREAPADMQCKDKFLVQSVVVTEGTTTKDVTGEMFNKGSGNVVDERKLKVVYVQPPRPPSPVREGSEEGSSPRASLSEGGNLNYQDTTRESDEPPLLSATRAHKDAEDVTSDSETSALISRLTEERNSAIQQNNKLLEEMDLVRREISKQNGGFPFVFVVVVALLGILLGYIMKR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0020900 | OsLima_04g0020900.01 | Chr04 | 28177661 | 28180855 | - | NAM | ||
| CDS seq | atgggctccgactccaaggagttgctcgggatcgagccgctcgagctccggttctccttcgagacgaagaagcagatctcatgctccatgcagctgacgaacagaacagatgactacatcgcctttaaggtcaagacaactagcccaaagaagtactgcgtcaggccgaacagtggcattgtgccgccacggtccaccagcgatgtcatcgtaacaatgcaagcccaacgggaggcaccagcagacatgcagtgcaaagacaagtttctagtgcagagcgttgtggtgactgaaggcacaacaaccaaggatgtcactggagagatgtttaacaaaggatcaggtaatgtggtggatgagaggaagttgaaggttgtctatgtccaaccaccacgaccaccatcccccgtgcgtgagggatctgaagaaggctcgtctcctcgggcttcattatcagaagggggcaacttgaattatcaagatacgcagacaactcgggaatctgatgagccaccattgctatctgctacaagagcacacaaggatgcagaAGAtgtaacatctgattctgagacatctgctttgatttcaagattgacagaagaaagaaactctgctattcagcagaacaataagcttctcgaggagatggaccttgtgaggagggaaattagcaagcagaatggtggtttcccttttgtgttcgtggtggtcgttgctcttctgggaattctactgggGtatatcatgaagagatag
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| Protein seq | MGSDSKELLGIEPLELRFSFETKKQISCSMQLTNRTDDYIAFKVKTTSPKKYCVRPNSGIVPPRSTSDVIVTMQAQREAPADMQCKDKFLVQSVVVTEGTTTKDVTGEMFNKGSGNVVDERKLKVVYVQPPRPPSPVREGSEEGSSPRASLSEGGNLNYQDTQTTRESDEPPLLSATRAHKDAEDVTSDSETSALISRLTEERNSAIQQNNKLLEEMDLVRREISKQNGGFPFVFVVVVALLGILLGYIMKR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0020900 | OsLima_04g0020900.03 | Chr04 | 28177764 | 28180851 | - | NAM | ||
| CDS seq | atgggctccgactccaaggagttgctcgggatcgagccgctcgagctccggttctccttcgagacgaagaagcagatctcatgctccatgcagctgacgaacagaacagatgactacatcgcctttaaggtcaagacaactagcccaaagaagtactgcgtcaggccgaacagtggcattgtgccgccacggtccaccagcgatgtcatcgtaacaatgcaagcccaacgggaggcaccagcagacatgcagtgcaaagacaagtttctagtgcagagcgttgtggtgactgaaggcacaacaaccaaggatgtcactggagagatgtttaacaaaggatcaggtaatgtggtggatgagaggaagttgaagacgcagacaactcgggaatctgatgagccaccattgctatctgctacaagagcacacaaggatgcagaAGAtgtaacatctgattctgagacatctgctttgatttcaagattgacagaagaaagaaactctgctattcagcagaacaataagcttctcgaggagatggaccttgtgaggagggaaattagcaagcagaatggtggtttcccttttgtgttcgtggtggtcgttgctcttctgggaattctactgggGtatatcatgaagagatag
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| Protein seq | MGSDSKELLGIEPLELRFSFETKKQISCSMQLTNRTDDYIAFKVKTTSPKKYCVRPNSGIVPPRSTSDVIVTMQAQREAPADMQCKDKFLVQSVVVTEGTTTKDVTGEMFNKGSGNVVDERKLKTQTTRESDEPPLLSATRAHKDAEDVTSDSETSALISRLTEERNSAIQQNNKLLEEMDLVRREISKQNGGFPFVFVVVVALLGILLGYIMKR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 28179608 | 28179691 | - | OsLima_04g0020900.01 | OsLima_04g0020900.02,OsLima_04g0020900.01 | All |
| RI | Chr04 | 28180403 | 28180855 | - | OsLima_04g0020900.02 | OsLima_04g0020900.02,OsLima_04g0020900.01 | All |
| A5 | Chr04 | 28179614 | 28179802 | - | OsLima_04g0020900.01 | OsLima_04g0020900.03,OsLima_04g0020900.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.341166 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0534400 | RBH | 1.043208 | 0.653851 | 5.199940 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g45190 | RBH | 0.435754 | 0.212007 | 0.849898 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0534400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0021180 | RBH | 0.532039 | 7.735608 | 9.987762 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0021940 | RBH | 0.166933 | 0.000000 | 3.349263 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0021660 | RBH | 0.483338 | 12.457973 | 8.808040 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0021410 | RBH | 0.140327 | 0.618683 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0021590 | RBH | 1.880762 | 17.578867 | 18.412079 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0436600 | SBH | 10.414602 | 2.027991 | 0.2103375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0020390 | RBH | 0.035437 | 0.713475 | 1.684914 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0420800 | RBH | 6.1310125 | 2.4209645 | 21.891367 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026610 | RBH | 0.568588 | 0.225378 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0020730 | RBH | 0.637958 | 12.434973 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0020810 | RBH | 0.0 | 14.332797 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0021230 | RBH | 0.503540 | 1.019175 | 1.832063 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0021400 | RBH | 0.117596 | 3.133994 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G020660 | RBH | 0.062802 | 2.249127 | 7.290630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0020590 | RBH | 0.916016 | 6.795857 | 5.674161 |
