Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0836400 | OGI:03098210 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:35145634-35146689 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGGCTAACTACGTATCAACGAGGTGAAAGCATACTTCTTGTACTAGCTAGATGCCTTTCAGTACTGCATATGTTATGTAGGTGCATATATATGGTGCCCTGACAAGCTAAGGTTCTCTGCCTAGTTCGTTACGGCTACACCAACTGTCGTAACGGTCAAAGCACCAACGTACGTCATCATCGGCGGCGGCGGCATGTGCTACGAGTCGGAGTGCTGCGGCGGCCGCGGCTCGTACCGGAACCGCAGGTTCGCGCTCGGCTTCTGGTTCGGCCTCGCCATCCTCGCCGCCATCGCCATCATCGTCGTGCTCGCCGTCGGCTACGGCCGCGTCTCCAGCCTCAGGGTCGCCGTCGACGACGCCTCCCTGACGCGCTTCGCGGTGACCGCCACCTCCGTCGCCTACAACCTCACCGTCGCGCTCGTCGTCCGCAACCCCAACTGGGCCATGGGCGTCACCTACCGCTCCCTCGAGGCGTCCTACCTCTTCCACGGCAAGCGCTTCGACGGCGCCGCCGCCGTCGTCTCCTCGGGATACGAGCAGGCGGCGAGGAAGACGGAGGTGTTCCGCCTCTCGTCCGGCTCCGACGCGGCGCCGGCCGCGCTGGGGAGCGGCGGCGAGAGGGAGTACCGGAAGGAGAGCGACAATGGCGGGGTGTTCGACGTCGAGGTGGACCTGTCCGGCGAGGTGAAGTACGCGCTGCACAGCGCGTGGTGCAGGGTGGAGGCCAGGTGCCCGCTCAAGCTGCAGCTCGCCGCCGCCGGCAGCGTCGCCTTCCAGGAGACCACCTGCGACATGCTCCGGTCGTCGCAGAGTGGATGCTGATCTGATCTGATCATCATCCTCCAACATTTCAGCTCTACTAGCTCATTTCATTGCTGCAGAGACCTCTCACTCACTGCTTGTGTTGTGATTGATTTTTTTTTCTTCTTTCTTTTTTTTGGGTGAATACTTGTGTTCATGATTAATTGTGCACGGATGCGTGCGTCTATGTACAGTTGCGTTTTACCTTCTCATTGACTTATTTTTCTGTTTTATAATTTGAATTAATTCTGCTT
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| CDS seq | ATGTGCTACGAGTCGGAGTGCTGCGGCGGCCGCGGCTCGTACCGGAACCGCAGGTTCGCGCTCGGCTTCTGGTTCGGCCTCGCCATCCTCGCCGCCATCGCCATCATCGTCGTGCTCGCCGTCGGCTACGGCCGCGTCTCCAGCCTCAGGGTCGCCGTCGACGACGCCTCCCTGACGCGCTTCGCGGTGACCGCCACCTCCGTCGCCTACAACCTCACCGTCGCGCTCGTCGTCCGCAACCCCAACTGGGCCATGGGCGTCACCTACCGCTCCCTCGAGGCGTCCTACCTCTTCCACGGCAAGCGCTTCGACGGCGCCGCCGCCGTCGTCTCCTCGGGATACGAGCAGGCGGCGAGGAAGACGGAGGTGTTCCGCCTCTCGTCCGGCTCCGACGCGGCGCCGGCCGCGCTGGGGAGCGGCGGCGAGAGGGAGTACCGGAAGGAGAGCGACAATGGCGGGGTGTTCGACGTCGAGGTGGACCTGTCCGGCGAGGTGAAGTACGCGCTGCACAGCGCGTGGTGCAGGGTGGAGGCCAGGTGCCCGCTCAAGCTGCAGCTCGCCGCCGCCGGCAGCGTCGCCTTCCAGGAGACCACCTGCGACATGCTCCGGTCGTCGCAGAGTGGATGCTGA
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| Protein seq | MCYESECCGGRGSYRNRRFALGFWFGLAILAAIAIIVVLAVGYGRVSSLRVAVDDASLTRFAVTATSVAYNLTVALVVRNPNWAMGVTYRSLEASYLFHGKRFDGAAAVVSSGYEQAARKTEVFRLSSGSDAAPAALGSGGEREYRKESDNGGVFDVEVDLSGEVKYALHSAWCRVEARCPLKLQLAAAGSVAFQETTCDMLRSSQSGC |
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| Function | NDR1/HIN1-like protein 3 [UniProtKB/Swiss-Prot:Q9FNH6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0836400 | Os03t0836400-01 | Chr03 | 35145634 | 35146689 | + | irgsp1_rep | ||
| CDS seq | ATGTGCTACGAGTCGGAGTGCTGCGGCGGCCGCGGCTCGTACCGGAACCGCAGGTTCGCGCTCGGCTTCTGGTTCGGCCTCGCCATCCTCGCCGCCATCGCCATCATCGTCGTGCTCGCCGTCGGCTACGGCCGCGTCTCCAGCCTCAGGGTCGCCGTCGACGACGCCTCCCTGACGCGCTTCGCGGTGACCGCCACCTCCGTCGCCTACAACCTCACCGTCGCGCTCGTCGTCCGCAACCCCAACTGGGCCATGGGCGTCACCTACCGCTCCCTCGAGGCGTCCTACCTCTTCCACGGCAAGCGCTTCGACGGCGCCGCCGCCGTCGTCTCCTCGGGATACGAGCAGGCGGCGAGGAAGACGGAGGTGTTCCGCCTCTCGTCCGGCTCCGACGCGGCGCCGGCCGCGCTGGGGAGCGGCGGCGAGAGGGAGTACCGGAAGGAGAGCGACAATGGCGGGGTGTTCGACGTCGAGGTGGACCTGTCCGGCGAGGTGAAGTACGCGCTGCACAGCGCGTGGTGCAGGGTGGAGGCCAGGTGCCCGCTCAAGCTGCAGCTCGCCGCCGCCGGCAGCGTCGCCTTCCAGGAGACCACCTGCGACATGCTCCGGTCGTCGCAGAGTGGATGCTGA
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| Protein seq | MCYESECCGGRGSYRNRRFALGFWFGLAILAAIAIIVVLAVGYGRVSSLRVAVDDASLTRFAVTATSVAYNLTVALVVRNPNWAMGVTYRSLEASYLFHGKRFDGAAAVVSSGYEQAARKTEVFRLSSGSDAAPAALGSGGEREYRKESDNGGVFDVEVDLSGEVKYALHSAWCRVEARCPLKLQLAAAGSVAFQETTCDMLRSSQSGC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0836400 | RBH | 0.0 | 0.098136 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g62020 | RBH | 0.0 | 0.066470 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0250501 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041220 | RBH | 0.0 | 2.482622 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0040890 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0040960 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041190 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0040690 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0599800 | RBH | 0.461052 | 0.634807 | 0.024531 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0040450 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0602400 | RBH | 0.6064095 | 0.694108 | 0.0815575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0041030 | RBH | 0.0 | 0.114576 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0040940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0040620 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0040680 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0040740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G040510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0040210 | RBH | 0.0 | 0.0 | 0.0 |
