Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0680200 | OGI:03076650 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:26989394-26995230 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTTTGGTGCCATGGAAGGTGGCGACAGTGATTCTGATTCTGATGACTCTGCGGAGACGGAGAAAGTTGGGCCACTTCATGAGGCAGCAAGCGCAGGGAAAATGGATACTTGCAAACATTTGGTGGAGCAGCTTGGGTTTGACATCAATGCTGAAGCAAGTGATGATTTGGGTATGTTCCATCGCAGTTTACAACTTGAATGCTTTCATGTTTCTCCTAGGTACTATTTTGTGCACCATCTAATGTAAGCTTTTAGATGCAACACAAAGATCATTTGCGATGTAAATTGTTAACGAACATCATGAAGGGACCTTACCTTAACAGCTCCAGCACCGGAAGCTCTGGCTTCAAATGCCACATGGTTTTTCTTGTGTATTGTGATCATTTTATGATCATCAATGGTGTGCCAACATTGATGAAATCATAATCAGCTGATGTAATACCTTTGTCTTTATTTTTTCAAGAATATCTTCTCCCATTTTGTTTGCCTCGTCTCCGTGTTTTTATCTGATGTTTATTGGTCGTGCAAAATTGTGTCTCTGGCTACTGGTCCTTCACTCCTGGTGCATATGTTTTCCCATGCCACTTTGTTAAAGTGTATGCTATTAATTTGATATTTGTTCTGCTTCTATCACATAATATAAACATGTGTGGTGATAGCCAAATATGTTCCGAGAGGCCCAAGTAATTGGGTAACGAATATGACTGCCAATAATGTTTATTTTTTTAGGCTGGTCATATTGCATCGAGCGCATTGTCCAGATAAACCGGGAAGCTAGTGCCTTTCATTTGTGCATTTAGTTTTGGTTGATATGCATCATAAATTTACTATTTTCTAAAGCGGAGGGTCCCCTGTTGCATGTTGACTTGACGTATCTTGTGAATTGTTGCTATCTGCATATAACTATTATGTGCTTTGTTGAATTATATAACTTTTATGCCCCATGTTTTGTTGTGACTAAATTGCTTGATCATAACACTCATGGCAGGTATGACACCTTTGGCTTGTGCGGTGTCCAAGGGAAAAGCAATTGCTGTGAGGTATTTTCTTGACAAAGGTGCTGATCCAAATAAGCAAGACAACATCGGTTTTACTCCTCTGCACTATGCTACAAAAGAAGGTGTCCTTTTGCACATGCTGGCATTTATATTTGCAGTTCTTGTACCGATCTGTCGCTGCATGAAAGAAATGAATTACAAATGCATCCACATTATTTATCATATTTTCGTAATTTTCTTATCTGGTTATCATCCCTAACTTCCTACCCACTCTATCCCAAGATATAGCTACCTTTTACCTATGAATCTGGACAAGTGCTTGGCCAGACTCATAACGGAAGGTAGGTATATCTTGGGACAGTGGAAGTTCCTTTTTGGGATAATAATAGTAGCCAATTTTTGTCCTAAAGCCTTTCTTGAGGATCAGTTTGGTTTCTGAAAATTGTTGTTTGTCCAATAAAGTTATCCAAAATTGGTTTTTTGGTTCAGAATGATCCTTGAACCCACTCGAAGTGCCACATGGGCAATCAAACTGCTGAGCAGTAGTCCGTGGTTGGCAGCTTCCTTGTGAAAATATATTATGCCCTTACGTCTCACATAAAAAAGAAAGGAAAAAGTGTTGCCCGAAACCTTATAGTCCTCTCTTCATGTTTCCCTTAAATTATTTATTTTTAGCTCCTACTTCTTGAACTTCATCATCTTCTTTCTTTCTTTTGCTATGGGAGACATGAGTGGCATAATATATTTTTCAGAATGGAGCTTGCCACAAAGTAAAAGCATTAGCTGAGTTGGGTTTCCTAAATGGTGCTTCAGGTGGGCTCAACGACCATTTTGAATGAAATGCCAAACTTGGAACACTTGGGCAAAATTCGATGGGCTAAATTGGTCATTATCCTTTTGTTTCCTTATGACATTCATTGTAGCTAACTTGAGATGGGAGTGGGGAGCCTCATATTATATCAATATCTTAGACATGGATAATTATGCTGCATGATTTTCATATTCAACATTTTTCTCCACTCTGTGTTAGCATGGTTATGTTTTAAGTTTTATACTTAGTACAAAATATATGTATACTTTTGAGTCAGATCTTGTCATGGTTATGCTTTAGGGAAATTTAAGAATCGTAGAACAAAGTAGTCAATATTGGCATATTGCACATGGGCTAATCCAAATCTTCATCTATATGTGTCTTCACTGTCATCGATTACTTATGCTGATACAAAAATCACCCCCATGCATATTAAGCACTTTGTTTTAAGGTTTCTAAACTTTCCTAAAAGAGGTGCACGGAAGCAACGGAATGTCGAATATCCAAGTTCTAAAATTCTTCACTGGAGTACGACCCTATCTATATTACATTTTTTTTACAGGGTATGATGGACTGGCACGACTACTGCTGTCTAAAGGGGCTAGTGTTGATGTTATTTCTTCTAAAGGCACAGCCCTGCATCTTGCTGCCTCCAGTTGGAAGTCTGGCATCATGAAGATTCTATTGGAGCACAATGCAGATGTAATGGGTTATTTAATGTTTTTGTCTGCACAACTACTTGTCTACAAAGTTCTATTGTCCACCACATGGCTAACCTTTTCATTTTGAAAATCGTAGCCAAACAAGGTCTCCGCAGATTCAGAGACACCATTAGCTGCAACACTTATTGCTTCTGATGGACTGAATGAACCTGCTGTGCTGAAGTGCATAAAGCTTCTTGTTAAGGTCTGTTACCCAATTCAGAATGTTCTTTACCTTTAAATCACCGGGGGGGATTGTATTATGTGATGTGCTTCTAATTAGATCCATATGCTTTATTTGAACTATGATATCCACATTTTTTTTCTTCATATTATGATGTCTGTATACACAGGCTGGTGCTAATTTGAACCGCGCTATTCCTGATACACCACTGGTGATAGCAACTAACAAAGACTTTGTTGAATGTGTTGAGTACTTGTTGGAGGCTGGTGCAAACGCCAATATTCCAACTAATAACGTGAGTTCTAAACTCTTTTTTATTGCGATCCTTATTTGATTTTTTGAGTGTGTGTATGCTTGCTGTTGGGGGGCTTGCTGCTGCTGCTGCTTTAATGTAATGTGTTATGTTGTCAACATGCCATCTAGATGGTGCGCAAGGGCCTATGTCTTCTATTACGGAGTATTACTTATTACATATTGTGAAATATTTTTCTCCATCTCTCTTTTGATACGCAATAGGGTGGTAAGACACCAATAGAAATAGCCGCGAAGTCTGGAAGAAGGAAGCTTGTGGAGATTCTATTTCCTTGCACGTTGCCAATTAAAGGTGTGTCAAACTGGACTGTTGAAGGAATCATCACCCATGTGAAATCAAAAAAATCAAAGAAGAAAGCATGCGCTCAGGTCTGAACGTCTGAACTCTCAGCTCAGTGTTGTATGTGCGATTATGCATTTCTTTGTTGTGTATCTTCTGTAGTCTGTAACTTTTTCCCTGCTTCTGAGATCAGAGTTAAAAATGCATGCTATCTCTATCTTGTGCTTCACCTGCCTACCTGCTAGTAACAAACATGTACTAGTTCATCTTTTTACCTACACACTGACTCTGTTAGTTAGTCAAGCCGTGGTCTGCATAGGTACTTGCAAGAATTGTACTGCATTCCTATCAGAAAGCCATCGTCATGCGTAAGAGTAAACAAGTAGTCAACAAGAGGCTTTAATTTGGAGTTCTCAGTTTAAGTTTTCTTAATGATTTAGGATAAGGAAAGTGGTACAGACAAAAAGGCTCAGTTGAAATCATTGGGTGCAAGTGCAGTTCAGGGGAAGGACTATGTTGGTGCATCCAAATTCTACAGTGAGGTATATTTTGTGCATCATATCTTCCCATTGGAAAGTTCTATTAGTTCCTACTCCCTCTAATCCCAAATATAAGTCATTTTGGACTTGTGCTGTGAATTAAGAAGATAACTCAAATGACTTTGTTGCCCTTCATTTATTACATTGGAATTTGTAAAAGATGAGGGTGAGAGGAGTAGCAACTGGCATTTCCTTGGTGAGGTTAAACATGGAAGAGGATGAAAAAGTGCCTGGAAGTTCTAATACCAGTTACATTTAGGAAAGAGTTGACTTACCACATTTGGAATTCTGCTATCGTTACTTATACACCTGTTGTCTTCACTACAGTAATAATACTTTATGTTTGATTAGTTTTTCTTTAGGCATATTTAGTAATTTCCTTGGTATATACTGGCAAATGGCATATTACCAGAAATTAGCTGGAAGGGGAATGGCTAAATGTGAAGTCTTGTTTCTGTGTGCAAAAAATATTATGAATGCTTTTTGAGCCATGGTTGGATGAAACCTGATAACTACAGGACAAATAACCAATGTGTTGAGTTTTTTCCTCTCTTGTTTTCAAACTAGACCTGATATTCCACTGACCAAATAGACCAACTTATGGTTGATTTTGTTTGTTTCCCAAGCTCTTCTTTTGTATCTTGTGTGCTTAAAAACGTTATTTTAGAACTGATAAAATTGGCATTTTACATATCTGGTTTGGTACTTGGTATTGAACTGGTTCTGTGTCATAGTTAGCTTGTTTCAATTATGAGCCTCCTGGAGACTTTCTCAGAGTGAATAGTTGAAACCTTGGCACTCAGATTTATGTTAACAAGTGATCTTTTGGAATTGGATTTCCCTGTGAAACAAGTTTGATTTTAGCCACAGAAATCAAAGCTTGTTCATAATTGGAACTACTGGATACCTTGAGCGTTGCAGTGTTAATTTATAGATACTTCAAAAAAAAAACATTTGAAGATGCAATACAGATTGACATGAATTGGAAAATAGTAAAGAGATAATATTCAAATATACCAATCACAAAGTAAAAAATAAGCAAAAAAAGAACAAGAAAAGTGATCGAATAAATAAAATGTTTGGAGTAACATGATCATGGGAGTATCCAAAGGCTCTTGTTTTCTGTGATATGTGGCATGTTGAGTTCATAGCAAGGGTTAATAAGTGGGTTCCAATTATATAGGAATTTTATGATTCATCAAGCATGACTATTGTATTGTTTCCAAGTCAAATCGATAGAAGAAATTATAATTGATAGACTATTGGTCTTAGGTTGGTTTATGTTGTGTGATCACAGATTCACATATTTTCCTCTTATTGCTTGTTTTTATGTAGGCCATCCAGCTGGATCCTACCGATGCAACATTGCATTCAAATAGGAGCTTTTGCTACCTAAAAAGTGGTGAAGCACGGGAAGCTTTGGTTGATGCTAAGACTTGCATAGGACTGAAACCAGATTGGCCAAAAGGTTACTATCGGAAAGGAGCTGCCCTGATGTCGCTCAAGGTGAACTAAAAATGCAACTCCTGTCTTCAGCTTCTTTATACGTCACAACCTGTAGATAACCCGCTGCACCTTTTTATTATTAGGAATACAAAGAAGCATGTGATGCATTCATGGATGGAGTGAAACTGGATCCTGCAAGTGGGGAGATGCATGAAGCATTTTGGTACTCATTTCTATCCATTACCTTTCTTTCTCTTCAACACAGTTCTGAACTTCTGAATGGCCTTTCACACCAAAATGACCCTGTCCCACAAAACGGTACCTGTTCTTATGAATCATAATGCTCATATGTTATCTGTGTTAATGAAACCGTGAGCCTGATCATTGAATTGTTTACCATTCTAATAGTAGCAGTTTTTTTTTTCACAAAATAGAATAATTGCATGGTAGCTTGAAGCCACCTAGGGATTTTCTAAAAAATAATGTTCTTACCCTTTCAGGGAGGCAGCCGCGGCATTGAAGAAGAAACATTTGGCTGGGAAGACTGTCAGCTCATTTGATTAG
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| CDS seq | ATGTTTGGTGCCATGGAAGGTGGCGACAGTGATTCTGATTCTGATGACTCTGCGGAGACGGAGAAAGTTGGGCCACTTCATGAGGCAGCAAGCGCAGGGAAAATGGATACTTGCAAACATTTGGTGGAGCAGCTTGGGTTTGACATCAATGCTGAAGCAAGTGATGATTTGGGTATGACACCTTTGGCTTGTGCGGTGTCCAAGGGAAAAGCAATTGCTGTGAGGTATTTTCTTGACAAAGGTGCTGATCCAAATAAGCAAGACAACATCGGTTTTACTCCTCTGCACTATGCTACAAAAGAAGGGTATGATGGACTGGCACGACTACTGCTGTCTAAAGGGGCTAGTGTTGATGTTATTTCTTCTAAAGGCACAGCCCTGCATCTTGCTGCCTCCAGTTGGAAGTCTGGCATCATGAAGATTCTATTGGAGCACAATGCAGATCCAAACAAGGTCTCCGCAGATTCAGAGACACCATTAGCTGCAACACTTATTGCTTCTGATGGACTGAATGAACCTGCTGTGCTGAAGTGCATAAAGCTTCTTGTTAAGGCTGGTGCTAATTTGAACCGCGCTATTCCTGATACACCACTGGTGATAGCAACTAACAAAGACTTTGTTGAATGTGTTGAGTACTTGTTGGAGGCTGGTGCAAACGCCAATATTCCAACTAATAACGGTGGTAAGACACCAATAGAAATAGCCGCGAAGTCTGGAAGAAGGAAGCTTGTGGAGATTCTATTTCCTTGCACGTTGCCAATTAAAGGTGTGTCAAACTGGACTGTTGAAGGAATCATCACCCATGTGAAATCAAAAAAATCAAAGAAGAAAGCATGCGCTCAGGATAAGGAAAGTGGTACAGACAAAAAGGCTCAGTTGAAATCATTGGGTGCAAGTGCAGTTCAGGGGAAGGACTATGTTGGTGCATCCAAATTCTACAGTGAGGCCATCCAGCTGGATCCTACCGATGCAACATTGCATTCAAATAGGAGCTTTTGCTACCTAAAAAGTGGTGAAGCACGGGAAGCTTTGGTTGATGCTAAGACTTGCATAGGACTGAAACCAGATTGGCCAAAAGGTTACTATCGGAAAGGAGCTGCCCTGATGTCGCTCAAGGAATACAAAGAAGCATGTGATGCATTCATGGATGGAGTGAAACTGGATCCTGCAAGTGGGGAGATGCATGAAGCATTTTGGGAGGCAGCCGCGGCATTGAAGAAGAAACATTTGGCTGGGAAGACTGTCAGCTCATTTGATTAG
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| Protein seq | MFGAMEGGDSDSDSDDSAETEKVGPLHEAASAGKMDTCKHLVEQLGFDINAEASDDLGMTPLACAVSKGKAIAVRYFLDKGADPNKQDNIGFTPLHYATKEGYDGLARLLLSKGASVDVISSKGTALHLAASSWKSGIMKILLEHNADPNKVSADSETPLAATLIASDGLNEPAVLKCIKLLVKAGANLNRAIPDTPLVIATNKDFVECVEYLLEAGANANIPTNNGGKTPIEIAAKSGRRKLVEILFPCTLPIKGVSNWTVEGIITHVKSKKSKKKACAQDKESGTDKKAQLKSLGASAVQGKDYVGASKFYSEAIQLDPTDATLHSNRSFCYLKSGEAREALVDAKTCIGLKPDWPKGYYRKGAALMSLKEYKEACDAFMDGVKLDPASGEMHEAFWEAAAALKKKHLAGKTVSSFD |
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| Function | Ankyrin-1 [UniProtKB/Swiss-Prot:P16157] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0680200 | Os03t0680200-00 | Chr03 | 26989394 | 26995230 | + | irgsp1_rep | ||
| CDS seq | ATGTTTGGTGCCATGGAAGGTGGCGACAGTGATTCTGATTCTGATGACTCTGCGGAGACGGAGAAAGTTGGGCCACTTCATGAGGCAGCAAGCGCAGGGAAAATGGATACTTGCAAACATTTGGTGGAGCAGCTTGGGTTTGACATCAATGCTGAAGCAAGTGATGATTTGGGTATGACACCTTTGGCTTGTGCGGTGTCCAAGGGAAAAGCAATTGCTGTGAGGTATTTTCTTGACAAAGGTGCTGATCCAAATAAGCAAGACAACATCGGTTTTACTCCTCTGCACTATGCTACAAAAGAAGGGTATGATGGACTGGCACGACTACTGCTGTCTAAAGGGGCTAGTGTTGATGTTATTTCTTCTAAAGGCACAGCCCTGCATCTTGCTGCCTCCAGTTGGAAGTCTGGCATCATGAAGATTCTATTGGAGCACAATGCAGATCCAAACAAGGTCTCCGCAGATTCAGAGACACCATTAGCTGCAACACTTATTGCTTCTGATGGACTGAATGAACCTGCTGTGCTGAAGTGCATAAAGCTTCTTGTTAAGGCTGGTGCTAATTTGAACCGCGCTATTCCTGATACACCACTGGTGATAGCAACTAACAAAGACTTTGTTGAATGTGTTGAGTACTTGTTGGAGGCTGGTGCAAACGCCAATATTCCAACTAATAACGGTGGTAAGACACCAATAGAAATAGCCGCGAAGTCTGGAAGAAGGAAGCTTGTGGAGATTCTATTTCCTTGCACGTTGCCAATTAAAGGTGTGTCAAACTGGACTGTTGAAGGAATCATCACCCATGTGAAATCAAAAAAATCAAAGAAGAAAGCATGCGCTCAGGATAAGGAAAGTGGTACAGACAAAAAGGCTCAGTTGAAATCATTGGGTGCAAGTGCAGTTCAGGGGAAGGACTATGTTGGTGCATCCAAATTCTACAGTGAGGCCATCCAGCTGGATCCTACCGATGCAACATTGCATTCAAATAGGAGCTTTTGCTACCTAAAAAGTGGTGAAGCACGGGAAGCTTTGGTTGATGCTAAGACTTGCATAGGACTGAAACCAGATTGGCCAAAAGGTTACTATCGGAAAGGAGCTGCCCTGATGTCGCTCAAGGAATACAAAGAAGCATGTGATGCATTCATGGATGGAGTGAAACTGGATCCTGCAAGTGGGGAGATGCATGAAGCATTTTGGGAGGCAGCCGCGGCATTGAAGAAGAAACATTTGGCTGGGAAGACTGTCAGCTCATTTGATTAG
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| Protein seq | MFGAMEGGDSDSDSDDSAETEKVGPLHEAASAGKMDTCKHLVEQLGFDINAEASDDLGMTPLACAVSKGKAIAVRYFLDKGADPNKQDNIGFTPLHYATKEGYDGLARLLLSKGASVDVISSKGTALHLAASSWKSGIMKILLEHNADPNKVSADSETPLAATLIASDGLNEPAVLKCIKLLVKAGANLNRAIPDTPLVIATNKDFVECVEYLLEAGANANIPTNNGGKTPIEIAAKSGRRKLVEILFPCTLPIKGVSNWTVEGIITHVKSKKSKKKACAQDKESGTDKKAQLKSLGASAVQGKDYVGASKFYSEAIQLDPTDATLHSNRSFCYLKSGEAREALVDAKTCIGLKPDWPKGYYRKGAALMSLKEYKEACDAFMDGVKLDPASGEMHEAFWEAAAALKKKHLAGKTVSSFD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0680200 | RBH | 0.0 | 0.0 | 1.946532 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g47650 | RBH | 0.0 | 0.0 | 0.488139 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0636100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0030050 | RBH | 0.0 | 0.0 | 3.008575 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0029780 | SBH | 0.0 | 0.0 | 2.492193 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0029830 | SBH | 0.0 | 0.0 | 1.275840 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0029920 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0029670 | SBH | 1.664413 | 0.000000 | 26.191372 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0467500 | SBH | 0 | 0.0238995 | 0.3960015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029380 | RBH | 0.000000 | 0.0 | 0.917426 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0468600 | RBH | 3.026256 | 0.1135365 | 36.2851465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0029700 | SBH | 0.039270 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0029770 | SBH | 0.122979 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0029720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0029550 | SBH | 0.441650 | 0.0 | 1.953772 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0029510 | SBH | 0.177925 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G029500 | RBH | 0.0 | 0.0 | 3.110347 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0029450 | RBH | 0.000000 | 0.0 | 5.052599 |
