Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0371400 | OGI:03039350 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:14572500-14573221 | ||||||||
| Gene Symbol | OsSTA101 | ||||||||||
| DNA seq | GATGACAATGGTGCTCCTGGAGACACTGAGGCTGTACAACCCGGCGCTCTTCATCCAGAGGAAGCCCACGGCGGACATCACGGTGGGATCGCTGGCGATCCCCGCCGGCGTCGCCGTCTACATCCCGGTCCCGATCATGCACCGGGACAGGGAGGTCTGGGGGCACGACGCCGGCGAGTTCAACCCGCTGAGGTTCCGGGACGGGGCGGCGAGGGCGGCGGCGGCGGCGGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGGCCGAGGTCGTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGCGGCCATGGCCGCGATGCTGCGGAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTCAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCCGGATGCATGAAGTGGGGGTGTGTTTCGATCACGCGTATAGCAATAATAAAAACCAGTCAATAGTAATACCCTACGCTTTGCTGCGGAATATATGTTTATGTTTAAATAGCGTGGAAATGATGTGAAGATGATGAGTTGATATTGCTTGCATGTTAAGTTCTAAAAATACAACAAAATTGTAAATGTTGTGCCGTGTTTGCGTGAGATTGAAATCGGTAAATGATGTGTCATGGTTGTATGAGATTTAAGATACTCTAAATAATAATTGCTAGTGGATGATTATGTGACGT
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| CDS seq | GATGACAATGGTGCTCCTGGAGACACTGAGGCTGTACAACCCGGCGCTCTTCATCCAGAGGAAGCCCACGGCGGACATCACGGTGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGGCCGAGGTCGTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGCGGCCATGGCCGCGATGCTGCGGAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTCAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCCGGATGCATGA |
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| Protein seq | DDNGAPGDTEAVQPGALHPEEAHGGHHGGIPHALLSFSIGPRSCIGQGFAMLEAKAAMAAMLRRLSFRVSPGYVHAPVDLITLKPKFGLPVIVRLPDA |
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| Function | 7-deoxyloganic acid hydroxylase [UniProtKB/Swiss-Prot:U5NE19] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0371400 | Os03t0371400-01 | Chr03 | 14572500 | 14573221 | + | irgsp1_rep | ||
| CDS seq | GATGACAATGGTGCTCCTGGAGACACTGAGGCTGTACAACCCGGCGCTCTTCATCCAGAGGAAGCCCACGGCGGACATCACGGTGGGATCCCGCACGCGCTCCTGTCCTTCTCGATCGGGCCGAGGTCGTGCATCGGCCAGGGCTTCGCGATGCTGGAGGCGAAGGCGGCCATGGCCGCGATGCTGCGGAGGCTCTCGTTCCGCGTCTCCCCCGGGTACGTGCACGCGCCCGTGGATTTGATCACGCTCAAGCCCAAGTTTGGGCTTCCGGTGATCGTGAGGCTGCCGGATGCATGA
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| Protein seq | DDNGAPGDTEAVQPGALHPEEAHGGHHGGIPHALLSFSIGPRSCIGQGFAMLEAKAAMAAMLRRLSFRVSPGYVHAPVDLITLKPKFGLPVIVRLPDA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0371400 | RBH | 2.850378 | 1.574639 | 4.173103 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g25490 | SBH | 0.050227 | 0.227421 | 0.191141 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0635200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0019300 | SBH | 4.283047 | 1.138509 | 0.436826 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0019130 | SBH | 1.801915 | 0.0 | 1.984034 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0019160 | SBH | 7.575901 | 0.0 | 3.344687 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0019210 | SBH | 1.434259 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0019010 | SBH | 42.939285 | 0.0 | 9.277088 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0243300 | SBH | 14.356692 | 0.0054165 | 0.058394 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018880 | SBH | 2.032433 | 0.0 | 2.053902 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0242500 | RBH | 7.1215245 | 10.7293935 | 4.7387665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0019000 | SBH | 2.847360 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0019020 | SBH | 2.756402 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0019080 | SBH | 45.080982 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018950 | SBH | 5.332471 | 0.0 | 2.401783 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018870 | SBH | 1.557783 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018990 | SBH | 2.872204 | 0.0 | 1.715860 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018840 | SBH | 13.584772 | 0.0 | 7.980526 |
