Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g25490 | OGI:03039260 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:14559322-14561845 | ||||||||
| Gene Symbol | OsSTA101 | ||||||||||
| DNA seq | CTCTCCATAATCCACCACCTCTTTGCCATGGCCTCTCTTGCTCTGGTTTTCCTTGCCCTCTTGTTGCCTACCATCTCATGGCTATGGGACTACATCATTGTGCCCCATATATGGAGGCCTTACATTGCAGCCAAGAGGCTCAGGGAGCAAGGAATCCGTGGACCACCCTACAAGTTCTTGAAAGGCTGCAATGAGGATGTGAAGAAAATGAAGGATGCTGCAGATGATCTGGTTCTTGATGTTCATGACCACAATTACCTCCCAAGGGTTATGCCATAGTACCTGAAATGGAGATCTCAATATGGTACTAGATCTGCTCAATGCTTTTTTTTTTAATATGCTGTTGTTTTAGTGCTTGGTTAGCAATGCTGTATGGTGGCCAAGCAACCTGACTGACAATTTTCAAAGCTAAATGCTCATCCTTCACTATAAAACTAAGAATAGATCACTAATGTGGATGGTAAGCAACATTGCAAATGTGAATTGTTGCAGGAGAGCCCTTTGTATACTGGTTTGGGGCAAAGCCTCGAATCTGCATCTTCAACTATGAGTGGGCCAGGCAGATTCTTTCAAGCAAGTCAGGACACTTTCTGAAGAATGACACTACCCCAACAGTGTTGGCGTTGCTTGGCAAGGGACTAGTACTGGTCGAAGGAATTGATTGGGAGCGCCATCGCAGAGTAATCAACCCTGCTTTCACCATGGATAAGATAAAGGTAATCTTATCTCAATCGTCTTAACATGTAGGTGTGCTAGTGCTACAGAACTGAGTATGGAAATGCACCCCAGAAACTATAATAGGTTGAGCAGAAAACTCGAGGCAACTTAAACTAGGTTGTTATATGTTTGCATGTCCATTTGCAATTTCACATGACAGTTCGTTTGTAGTAAGAAAACACCAGATAAAAAGAAACCAAAATATCGAAACCATAATGAAAAAAAAATCAAAACAAGACAATAGAAAATATATCATACCCAACACATTTAATTGCAACAAAATTAATATTAGTATCGCTTCACTTTGATATCCATGCAGATGATGACAAAAACAATGGTAGCTTGTGCTCAAAACATGGTGAAGGAATTGGAAGATCAAGCATCCAGCAACAAGAATGGAGAAACTCAAGTGGAATTGGACAAACAATTCCAAGAGTTAACAGCAGATATCATATCTCATACGGCCTTCGGAAGCAGCTATAAGTTAGGAATAGAAGCGTTCCATGCACAGAAAGAGCTCCAGGAAATTGCTGTAAAATCTCTCCTCAACGTGCAGATACCAGGATTCAGGTAATATATCTAATACTCCCTTCCAAAGCTTGTAGAATGTGAAATTAAATCCCACGAACATGCAACCATATTTTGGCTCATTCATTCATATATTTACTTCTTTTTTTTTTTTAGTTCAGCTACCTTCCTACAAAAGGGAATTGGAGGAAATTGACACTTGAAAAGAAGCTTAGGGGCACTCTCATGCAGATCATACAATCCCGATTATCATCAAAAGGAAGTGGATACGGAAGCGATCTCCTTGGTTTGATGCTTGAGGCTTGCATTGCAACAGATCAGGGAAGGGAGCAACATCAGCTCAGCTTAAGCATCGATGAAATTATACATGAGTGCAAAACATTCTTCTTTGCTGGTCATGAAACCACGTCACTTCTTCTTACCTGGACAGTGTTTTTGCTCAGTGTGTATCCAGAATGGCAGGCAAGACTCCGGTTGGAAGCTTTGAGGGAATGTGGAAAAGAAAATCCAAATGGTGACAACCTTAGCAAACTGAAAGAGGCAAGAAAACTAGTACCTATGTTGCCTTTTATAATCTATTTTGATATCTTTTTTTTCTTGTGATATGTAACTCCATGTGTATCATTCTAATAATAATGGTTCATGTATGGCTAACTACAACATAACATATATATATATATATATATTGCAGATGTCAATGGTATTCCTTGAGACCCTAAGGCTCTATGGTCCTGCTCTTTTCCTTCAAAGAAAACCTCTAACAGATATTACAGTAGGAGAAACAAAAATACCCAAAGACCATGCAATTATCATACCTTCAGCAATTATGCACCGGGACAAGGAGATTTGGGGTGACGATACAGATGAATTCAATCCATTAAGATTTCAGAACGGGGTCACAAGAGCAGCCAAAGTTCCACATGCCCTACTGGCATTCTCAATAGGGCCAAGGTCTTGCATCGGTCAGAATTTTGCGATGTTGGAAGCCAAGTCAGTTATGGCTATGATCCTAAAAAAGTTCTCATTCACACTTTCCCCTAACTATGTTCATGCACCTGTAGACCTGTTAACTCTTCAGCCTAAGTTTGGTCTTCCTGTTGTTCTAAGGCTACTGGATGCATGAAGTTAGATGATTTACATGTTACCAAACTTAAATGGAATCTGTATGCCAAAGGTTGCTACTGACCTACGGCACTATACATTGTACCCCACAGTGGATGTATCCTTATAAAATAAAATAGCTCGGGCCATGATTCAATGTGAATTACTGTTCTGGTGC
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| CDS seq | ATGGATAAGATAAAGATGATGACAAAAACAATGGTAGCTTGTGCTCAAAACATGGTGAAGGAATTGGAAGATCAAGCATCCAGCAACAAGAATGGAGAAACTCAAGTGGAATTGGACAAACAATTCCAAGAGTTAACAGCAGATATCATATCTCATACGGCCTTCGGAAGCAGCTATAAGTTAGGAATAGAAGCGTTCCATGCACAGAAAGAGCTCCAGGAAATTGCTGTAAAATCTCTCCTCAACGTGCAGATACCAGGATTCAGCTACCTTCCTACAAAAGGGAATTGGAGGAAATTGACACTTGAAAAGAAGCTTAGGGGCACTCTCATGCAGATCATACAATCCCGATTATCATCAAAAGGAAGTGGATACGGAAGCGATCTCCTTGGTTTGATGCTTGAGGCTTGCATTGCAACAGATCAGGGAAGGGAGCAACATCAGCTCAGCTTAAGCATCGATGAAATTATACATGAGTGCAAAACATTCTTCTTTGCTGGTCATGAAACCACGTCACTTCTTCTTACCTGGACAGTGTTTTTGCTCAGTGTGTATCCAGAATGGCAGGCAAGACTCCGGTTGGAAGCTTTGAGGGAATGTGGAAAAGAAAATCCAAATGGTGACAACCTTAGCAAACTGAAAGAGATGTCAATGGTATTCCTTGAGACCCTAAGGCTCTATGGTCCTGCTCTTTTCCTTCAAAGAAAACCTCTAACAGATATTACAGTAGGAGAAACAAAAATACCCAAAGACCATGCAATTATCATACCTTCAGCAATTATGCACCGGGACAAGGAGATTTGGGGTGACGATACAGATGAATTCAATCCATTAAGATTTCAGAACGGGGTCACAAGAGCAGCCAAAGTTCCACATGCCCTACTGGCATTCTCAATAGGGCCAAGGTCTTGCATCGGTCAGAATTTTGCGATGTTGGAAGCCAAGTCAGTTATGGCTATGATCCTAAAAAAGTTCTCATTCACACTTTCCCCTAACTATGTTCATGCACCTGTAGACCTGTTAACTCTTCAGCCTAAGTTTGGTCTTCCTGTTGTTCTAAGGCTACTGGATGCATGA
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| Protein seq | MDKIKMMTKTMVACAQNMVKELEDQASSNKNGETQVELDKQFQELTADIISHTAFGSSYKLGIEAFHAQKELQEIAVKSLLNVQIPGFSYLPTKGNWRKLTLEKKLRGTLMQIIQSRLSSKGSGYGSDLLGLMLEACIATDQGREQHQLSLSIDEIIHECKTFFFAGHETTSLLLTWTVFLLSVYPEWQARLRLEALRECGKENPNGDNLSKLKEMSMVFLETLRLYGPALFLQRKPLTDITVGETKIPKDHAIIIPSAIMHRDKEIWGDDTDEFNPLRFQNGVTRAAKVPHALLAFSIGPRSCIGQNFAMLEAKSVMAMILKKFSFTLSPNYVHAPVDLLTLQPKFGLPVVLRLLDA |
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| Function | Cytochrome P450 709B2 [UniProtKB/Swiss-Prot:F4IK45] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g25490 | LOC_Os03g25490.1 | Chr03 | 14559322 | 14561845 | + | MSU_osa1r7 | ||
| CDS seq | ATGGATAAGATAAAGATGATGACAAAAACAATGGTAGCTTGTGCTCAAAACATGGTGAAGGAATTGGAAGATCAAGCATCCAGCAACAAGAATGGAGAAACTCAAGTGGAATTGGACAAACAATTCCAAGAGTTAACAGCAGATATCATATCTCATACGGCCTTCGGAAGCAGCTATAAGTTAGGAATAGAAGCGTTCCATGCACAGAAAGAGCTCCAGGAAATTGCTGTAAAATCTCTCCTCAACGTGCAGATACCAGGATTCAGCTACCTTCCTACAAAAGGGAATTGGAGGAAATTGACACTTGAAAAGAAGCTTAGGGGCACTCTCATGCAGATCATACAATCCCGATTATCATCAAAAGGAAGTGGATACGGAAGCGATCTCCTTGGTTTGATGCTTGAGGCTTGCATTGCAACAGATCAGGGAAGGGAGCAACATCAGCTCAGCTTAAGCATCGATGAAATTATACATGAGTGCAAAACATTCTTCTTTGCTGGTCATGAAACCACGTCACTTCTTCTTACCTGGACAGTGTTTTTGCTCAGTGTGTATCCAGAATGGCAGGCAAGACTCCGGTTGGAAGCTTTGAGGGAATGTGGAAAAGAAAATCCAAATGGTGACAACCTTAGCAAACTGAAAGAGATGTCAATGGTATTCCTTGAGACCCTAAGGCTCTATGGTCCTGCTCTTTTCCTTCAAAGAAAACCTCTAACAGATATTACAGTAGGAGAAACAAAAATACCCAAAGACCATGCAATTATCATACCTTCAGCAATTATGCACCGGGACAAGGAGATTTGGGGTGACGATACAGATGAATTCAATCCATTAAGATTTCAGAACGGGGTCACAAGAGCAGCCAAAGTTCCACATGCCCTACTGGCATTCTCAATAGGGCCAAGGTCTTGCATCGGTCAGAATTTTGCGATGTTGGAAGCCAAGTCAGTTATGGCTATGATCCTAAAAAAGTTCTCATTCACACTTTCCCCTAACTATGTTCATGCACCTGTAGACCTGTTAACTCTTCAGCCTAAGTTTGGTCTTCCTGTTGTTCTAAGGCTACTGGATGCATGA
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| Protein seq | MDKIKMMTKTMVACAQNMVKELEDQASSNKNGETQVELDKQFQELTADIISHTAFGSSYKLGIEAFHAQKELQEIAVKSLLNVQIPGFSYLPTKGNWRKLTLEKKLRGTLMQIIQSRLSSKGSGYGSDLLGLMLEACIATDQGREQHQLSLSIDEIIHECKTFFFAGHETTSLLLTWTVFLLSVYPEWQARLRLEALRECGKENPNGDNLSKLKEMSMVFLETLRLYGPALFLQRKPLTDITVGETKIPKDHAIIIPSAIMHRDKEIWGDDTDEFNPLRFQNGVTRAAKVPHALLAFSIGPRSCIGQNFAMLEAKSVMAMILKKFSFTLSPNYVHAPVDLLTLQPKFGLPVVLRLLDA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g25490 | LOC_Os03g25490.2 | Chr03 | 14559322 | 14561845 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAGATCATACAATCCCGATTATCATCAAAAGGAAGTGGATACGGAAGCGATCTCCTTGGTTTGATGCTTGAGGCTTGCATTGCAACAGATCAGGGAAGGGAGCAACATCAGCTCAGCTTAAGCATCGATGAAATTATACATGAGTGCAAAACATTCTTCTTTGCTGGTCATGAAACCACGTCACTTCTTCTTACCTGGACAGTGTTTTTGCTCAGTGTGTATCCAGAATGGCAGGCAAGACTCCGGTTGGAAGCTTTGAGGGAATGTGGAAAAGAAAATCCAAATGGTGACAACCTTAGCAAACTGAAAGAGATGTCAATGGTATTCCTTGAGACCCTAAGGCTCTATGGTCCTGCTCTTTTCCTTCAAAGAAAACCTCTAACAGATATTACAGTAGGAGAAACAAAAATACCCAAAGACCATGCAATTATCATACCTTCAGCAATTATGCACCGGGACAAGGAGATTTGGGGTGACGATACAGATGAATTCAATCCATTAAGATTTCAGAACGGGGTCACAAGAGCAGCCAAAGTTCCACATGCCCTACTGGCATTCTCAATAGGGCCAAGGTCTTGCATCGGTCAGAATTTTGCGATGTTGGAAGCCAAGTCAGTTATGGCTATGATCCTAAAAAAGTTCTCATTCACACTTTCCCCTAACTATGTTCATGCACCTGTAGACCTGTTAACTCTTCAGCCTAAGTTTGGTCTTCCTGTTGTTCTAAGGCTACTGGATGCATGA
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| Protein seq | MQIIQSRLSSKGSGYGSDLLGLMLEACIATDQGREQHQLSLSIDEIIHECKTFFFAGHETTSLLLTWTVFLLSVYPEWQARLRLEALRECGKENPNGDNLSKLKEMSMVFLETLRLYGPALFLQRKPLTDITVGETKIPKDHAIIIPSAIMHRDKEIWGDDTDEFNPLRFQNGVTRAAKVPHALLAFSIGPRSCIGQNFAMLEAKSVMAMILKKFSFTLSPNYVHAPVDLLTLQPKFGLPVVLRLLDA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.050227 | 0.227421 | 0.191141 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0370900 | SBH | 0.564103 | 0.403807 | 2.618571 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g44140 | RBH | 0.144510 | 0.0 | 0.268450 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0370900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0019290 | RBH | 0.000000 | 0.000000 | 3.154665 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0019120 | RBH | 0.065788 | 0.000000 | 0.520614 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0019150 | RBH | 0.000000 | 0.000000 | 2.361766 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0019200 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0019000 | RBH | 0.000000 | 0.000000 | 5.551703 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0242700 | RBH | 0.6552455 | 2.1989915 | 3.292919 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018870 | RBH | 0.000000 | 0.000000 | 0.689779 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0242500 | SBH | 7.1215245 | 10.7293935 | 4.7387665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0018990 | RBH | 0.073647 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0019010 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0019070 | RBH | 0.716618 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018940 | RBH | 0.373272 | 0.0 | 0.161804 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018860 | RBH | 0.069045 | 0.461320 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018980 | RBH | 0.0 | 0.0 | 0.512677 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018810 | SBH | 1.793123 | 1.801151 | 2.458386 |
