Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
Os03g0329200 OGI:03032230 | 16/16 Nipponbare | IRGSP 1.0 | RAP-db Chr03:12068148-12071893
Gene Symbol C3H23, OsC3H23
DNA seq

CTCAATCCTTTGGGAAATGGAGCTGCTCAGTGGCTCAGTGGCCGCAGCTCCGGGAAGCGGAGGCTACCGAGAGCAACCGGACCACGCCAAGAAGCACTAGCTAGTGTACTGCCTCCTCGATCTTGCTCTATCTACCACTAGCATCGAGCTTGCTTCGCTAGCTCCTGTATATTTAAGGCCGTAATAAGTGTAAACACAGCACCAATAGTCCAACACAGATACTAGTAGTAGTGTGGTAAAAGGGTGAACTGAAGACCAAGAGGCAAAGGCGCCTGTGAGGCTGTGACTGAGAAGGTAGGAGTAGGAGAAGAGAAGCTTTGGGCGCCGCCATGGATGCATACGAGGCGACCAAGGTGGTGTTCTCCCGGATCCAGGCGCTGGACCCTGACCACGCCGCCAAGATCATGGGCCTCCTGCTCATCCAGGACCACGGCGACAAGGAGATGATACGCCTCGCCTTCGGCCCCGAGGCGCTGCTCCACAGCGTCATGGCGCAGGCGCGCAAGGAGCTCGCCCTCCTGCCGCCGCCTCAGGCGGCGTCGTCGTCGCCCACCGTGCCGGCAGCCCACTCGCCGTTCCTGCTGTCGAGGCAGAACTCCGGCCGCTGCCCCGCGCCGTCGCCGTCGTCGTGGGCGCAGGCGCAGCCGTTCTCGAGGAGTAACAGCATGGGCAATGGCGGCGCCGCGGATGAGATGGTCGGCGCTGGGGAGGAGCTAATGAGCCCCTTGAACGGCGGGGGAGGCGCCGCGGCGAACGCCCCGCCCTTCTTTCCTCGGGGTGGGGACGCGCTCCTGGACGACTTCGAGCTGCAGGAGCAGCTCGCGTTCCTGCACGACGGAGCCGGGGGCGTGAACCCCGGGCATGCTCTCCAGGCGTTCGACGGAGCGGAGTGCCGGAGCCCCGGCCCCGGCGAGAGCGGCGGGATGCTCCCCTACGGCCTCGCCTGGGCCAACGGCGGCCCTGGGCACCGCCGCAGCGCGTCGGTGAACGAGCTCTGCCTCGGCGGCGACGGCTTCGGGTGGAAACCTTGCCTGTACTACGCGCGCGGGTTCTGCAAGAACGGCAGCACCTGCAGGTTCGTCCATGGCGGCCTCTCCGACGACGCCGCCATGGACGCAACCACCGCCGAACAGCAGCAGTGCCAGGATTTCCTCCTCCGCTCCAAGAGCCAGCGCCTCGGCCCCGCCGCCTTCCCGTTCACCCCCACAGGCTCTCTCCCTGCCTCGCCATCCGCCACCAGCAAGTGCCTCAGCCTCCTCCTGCAGCAGCAGCAGCAGCACAACGACAACCAAAGGTACTACCGCCTTCGCAACCTCCATGCGTTCTCCAAGCCAGAAGGCATTTCAAAGTTCCAAAACGTTTCTTGCTTGCGCGTGTGAAGAGCCGCCGCGGCCGCGCTGATGCTCGCCGGCGGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGATTTCGCCAGCATGATGAACCCCGGGTCGCGCCAGATTTACCTCACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGGTATATAATGCGATGTTGCAATGATGCTTCTTCCTTCTTTCATGGCGGGCTCGGTAGGACGCGATCTGATTGGCATTTTTGCATTGCTGTTCTTGGCAACGCGCCGCGCTGCAGCATCTACGGGCCGGTGCACGACGTGCGCATCCCGTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTTTACCCGGAGACGGTGAAGCTGATCTTGGCCAAGGGCAACCCGCACTTCATCTGCGACGCCCGCGTGCTCGTCAAGCCCTACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGGTACGTTCGAAACGCGGCTTGAATGAAGAAATGCATGCGCGATTATGTTAAGCGCTCCAAATTAGTAGTAGTAGTATACTACTACGTTGCTTGTCACGACTGCTAGCCACCAACCTGCATGCATGTGAATTTGTTGTTCGTCGCTCCTCAGGAAGCAGCAGCAAGGCGATTTCTGCTGCATGTCGCCCACGGGGTTAGACGCCAGGGACCCCTTTGATTTTCACCAGCTCGGTATAAAAAGATTCAACCTTTACCTGCTCCTACCATTTGGACGCCCTGTTTGCCTGATGTTCAATGTTGCTTGCTAGAGCTGTAAGTTTTGATGGATGTTGGTTTGGTGTTCGTCAGGTGCAAGGATGCTGCAGCACTCCAACAGCGCGAACGAGCTAATGCTGCGGCGGAAGCTCGAGGAGCAGCAACAGGCGGCGGAGCTGCAGCAGGCTATTGATCTCCATAGCCGCCGCCTCATTGGCCTCCAGCTGCTCGACCTCAAGTCTTCTGCCGCTGTCCATGCGGCGGAGACGACAACAATGTCTCTGCCCACTCCGATCACCAATGCCTTCACCTCCGGCCAACCCGGTGCCACCACAATCGTCGAGTCACCGCCTAGCTCTAGTAAGCATAGATAGCATTGATCGAACTCGTTCTTTAGACGTCAATCAATCAAGTTCTCTTAACTTGCCAATATCCACTGTACATTGTCAGCTGGGCAACTGATGGCGAGCTGCGGCTCTCCATCGGAGGGGAAAGTTGTCAATGGTGGTAATAAGGCGGATTCTGCCGGTGAGGTTACCCGCAATGCCGATAGTGACCAAAGGTAGATTTTTACCATTATTGGCATTCTGCTTGCTCATGATTCTCAGACTAATGTCATTAACTCATGAACAACAAGCCTACAAATCTGCAATTATTCCGTGGCTGAAAGTTTGCTTCACCATTGTTTGTGCATGTATTTTGAGCAGTGGTGAGCACAACTTGCCAGACAGCCCGTTTGCTTCCTCTACCAAGTCGACCGCATTCTTTACCGCAACCGCTGCCACTGCCATTGGTAGCGAGGGAGATTTCACCACCGGTAGTAGCTGCAATATTGGTGGCAGTGCGGTCGGCAGCGCCAACCCTCTCCGGCCTCCCACATTGGACATACCTTCGCCAAGGACCTGCTTCTTCCCCATGCCCAGGTTTGGCCATGCCACTACTTTGAGCAGTTGATTACTACTTGATTGTACTGGTCATTTCGTGATCACTTGCGATTGGAATGATTCGATCAAATGCAATGAGCAGGCTGTCCGAGCACGGGGCGATCGGGATGTAAAGTAGTCCACAATGGAAGTGGCTGAAACCCTCTCCAGAAATCATAGTAAGCACTGCTTTATTCCCACTACGTTTCCCAATTATTAGGCTTCTACCCATCTAATTATGCTGCCATTTTTGCGTTCTTTCTTTTGGTGTTTATTTCTGTGCAGGAATACATGAAGCAAAGAAAGTGTTATCGGAATATAGGGGAAAAAAGGAGTGGAGTGTCAGCGTAGTTTTTAGGATGTTTAGCTCCCCTTTCTTTTCGTTTTTAAGCTTCTCTCACCTTTTAGTGGATAGCTCCATTAAACAACACGAGAAGAAGAAGATGCCATTAGCCCTTATGGAAGAAAAAGTGGCAGCATATGAAGTATTGTGATATACTACTATATATAATACTACTCTATATATATATAAATAATTTAGTGGTGCGCCTAATTATACTAGAGAATATAGTACTATGTGGCAGTTAGCAGTTATTTTGTTTACTACTGCCATCAGACAATTGATGTTGTTACCCAGTTCTTCCATGTATAACAACTACTCGTATATTATACTGATTCTGTGGTTAATCCTGGAGGCAAGTGCCTGCCAC

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CDS seq

ATGGATGCATACGAGGCGACCAAGGTGGTGTTCTCCCGGATCCAGGCGCTGGACCCTGACCACGCCGCCAAGATCATGGGCCTCCTGCTCATCCAGGACCACGGCGACAAGGAGATGATACGCCTCGCCTTCGGCCCCGAGGCGCTGCTCCACAGCGTCATGGCGCAGGCGCGCAAGGAGCTCGCCCTCCTGCCGCCGCCTCAGGCGGCGTCGTCGTCGCCCACCGTGCCGGCAGCCCACTCGCCGTTCCTGCTGTCGAGGCAGAACTCCGGCCGCTGCCCCGCGCCGTCGCCGTCGTCGTGGGCGCAGGCGCAGCCGTTCTCGAGGAGTAACAGCATGGGCAATGGCGGCGCCGCGGATGAGATGGTCGGCGCTGGGGAGGAGCTAATGAGCCCCTTGAACGGCGGGGGAGGCGCCGCGGCGAACGCCCCGCCCTTCTTTCCTCGGGGTGGGGACGCGCTCCTGGACGACTTCGAGCTGCAGGAGCAGCTCGCGTTCCTGCACGACGGAGCCGGGGGCGTGAACCCCGGGCATGCTCTCCAGGCGTTCGACGGAGCGGAGTGCCGGAGCCCCGGCCCCGGCGAGAGCGGCGGGATGCTCCCCTACGGCCTCGCCTGGGCCAACGGCGGCCCTGGGCACCGCCGCAGCGCGTCGGTGAACGAGCTCTGCCTCGGCGGCGACGGCTTCGGGTGGAAACCTTGCCTGTACTACGCGCGCGGGTTCTGCAAGAACGGCAGCACCTGCAGGTTCGTCCATGGCGGCCTCTCCGACGACGCCGCCATGGACGCAACCACCGCCGAACAGCAGCAGTGCCAGGATTTCCTCCTCCGCTCCAAGAGCCAGCGCCTCGGCCCCGCCGCCTTCCCGTTCACCCCCACAGGCTCTCTCCCTGCCTCGCCATCCGCCACCAGCAAGTGCCTCAGCCTCCTCCTGCAGCAGCAGCAGCAGCACAACGACAACCAAAGAGCCGCCGCGGCCGCGCTGATGCTCGCCGGCGGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGATTTCGCCAGCATGATGAACCCCGGGTCGCGCCAGATTTACCTCACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGCATCTACGGGCCGGTGCACGACGTGCGCATCCCGTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTTTACCCGGAGACGGTGAAGCTGATCTTGGCCAAGGGCAACCCGCACTTCATCTGCGACGCCCGCGTGCTCGTCAAGCCCTACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGGAAGCAGCAGCAAGGCGATTTCTGCTGCATGTCGCCCACGGGGTTAGACGCCAGGGACCCCTTTGATTTTCACCAGCTCGGTGCAAGGATGCTGCAGCACTCCAACAGCGCGAACGAGCTAATGCTGCGGCGGAAGCTCGAGGAGCAGCAACAGGCGGCGGAGCTGCAGCAGGCTATTGATCTCCATAGCCGCCGCCTCATTGGCCTCCAGCTGCTCGACCTCAAGTCTTCTGCCGCTGTCCATGCGGCGGAGACGACAACAATGTCTCTGCCCACTCCGATCACCAATGCCTTCACCTCCGGCCAACCCGGTGCCACCACAATCGTCGAGTCACCGCCTAGCTCTACTGGGCAACTGATGGCGAGCTGCGGCTCTCCATCGGAGGGGAAAGTTGTCAATGGTGGTAATAAGGCGGATTCTGCCGGTGAGGTTACCCGCAATGCCGATAGTGACCAAAGTGGTGAGCACAACTTGCCAGACAGCCCGTTTGCTTCCTCTACCAAGTCGACCGCATTCTTTACCGCAACCGCTGCCACTGCCATTGGTAGCGAGGGAGATTTCACCACCGGTAGTAGCTGCAATATTGGTGGCAGTGCGGTCGGCAGCGCCAACCCTCTCCGGCCTCCCACATTGGACATACCTTCGCCAAGGACCTGCTTCTTCCCCATGCCCAGGCTGTCCGAGCACGGGGCGATCGGGATGTAA

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Protein seq

MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPQAASSSPTVPAAHSPFLLSRQNSGRCPAPSPSSWAQAQPFSRSNSMGNGGAADEMVGAGEELMSPLNGGGGAAANAPPFFPRGGDALLDDFELQEQLAFLHDGAGGVNPGHALQAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSASVNELCLGGDGFGWKPCLYYARGFCKNGSTCRFVHGGLSDDAAMDATTAEQQQCQDFLLRSKSQRLGPAAFPFTPTGSLPASPSATSKCLSLLLQQQQQHNDNQRAAAAALMLAGGDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDFCCMSPTGLDARDPFDFHQLGARMLQHSNSANELMLRRKLEEQQQAAELQQAIDLHSRRLIGLQLLDLKSSAAVHAAETTTMSLPTPITNAFTSGQPGATTIVESPPSSTGQLMASCGSPSEGKVVNGGNKADSAGEVTRNADSDQSGEHNLPDSPFASSTKSTAFFTATAATAIGSEGDFTTGSSCNIGGSAVGSANPLRPPTLDIPSPRTCFFPMPRLSEHGAIGM

Function Zinc finger CCCH domain-containing protein 23 [UniProtKB/Swiss-Prot:Q10LZ9]

Transcripts

Gene Transcript Chromosome Start End Strand Source
Os03g0329200 Os03t0329200-01 Chr03 12068148 12071332 + irgsp1_rep
CDS seq

ATGGATGCATACGAGGCGACCAAGGTGGTGTTCTCCCGGATCCAGGCGCTGGACCCTGACCACGCCGCCAAGATCATGGGCCTCCTGCTCATCCAGGACCACGGCGACAAGGAGATGATACGCCTCGCCTTCGGCCCCGAGGCGCTGCTCCACAGCGTCATGGCGCAGGCGCGCAAGGAGCTCGCCCTCCTGCCGCCGCCTCAGGCGGCGTCGTCGTCGCCCACCGTGCCGGCAGCCCACTCGCCGTTCCTGCTGTCGAGGCAGAACTCCGGCCGCTGCCCCGCGCCGTCGCCGTCGTCGTGGGCGCAGGCGCAGCCGTTCTCGAGGAGTAACAGCATGGGCAATGGCGGCGCCGCGGATGAGATGGTCGGCGCTGGGGAGGAGCTAATGAGCCCCTTGAACGGCGGGGGAGGCGCCGCGGCGAACGCCCCGCCCTTCTTTCCTCGGGGTGGGGACGCGCTCCTGGACGACTTCGAGCTGCAGGAGCAGCTCGCGTTCCTGCACGACGGAGCCGGGGGCGTGAACCCCGGGCATGCTCTCCAGGCGTTCGACGGAGCGGAGTGCCGGAGCCCCGGCCCCGGCGAGAGCGGCGGGATGCTCCCCTACGGCCTCGCCTGGGCCAACGGCGGCCCTGGGCACCGCCGCAGCGCGTCGGTGAACGAGCTCTGCCTCGGCGGCGACGGCTTCGGGTGGAAACCTTGCCTGTACTACGCGCGCGGGTTCTGCAAGAACGGCAGCACCTGCAGGTTCGTCCATGGCGGCCTCTCCGACGACGCCGCCATGGACGCAACCACCGCCGAACAGCAGCAGTGCCAGGATTTCCTCCTCCGCTCCAAGAGCCAGCGCCTCGGCCCCGCCGCCTTCCCGTTCACCCCCACAGGCTCTCTCCCTGCCTCGCCATCCGCCACCAGCAAGTGCCTCAGCCTCCTCCTGCAGCAGCAGCAGCAGCACAACGACAACCAAAGAGCCGCCGCGGCCGCGCTGATGCTCGCCGGCGGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGATTTCGCCAGCATGATGAACCCCGGGTCGCGCCAGATTTACCTCACCTTCCCGGCCGACAGCACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGCATCTACGGGCCGGTGCACGACGTGCGCATCCCGTACCAGCAGAAGCGCATGTTCGGGTTCGTCACCTTCGTTTACCCGGAGACGGTGAAGCTGATCTTGGCCAAGGGCAACCCGCACTTCATCTGCGACGCCCGCGTGCTCGTCAAGCCCTACAAGGAGAAGGGCAAGGTCCCCGACAAGTACAGGAAGCAGCAGCAAGGCGATTTCTGCTGCATGTCGCCCACGGGGTTAGACGCCAGGGACCCCTTTGATTTTCACCAGCTCGGTGCAAGGATGCTGCAGCACTCCAACAGCGCGAACGAGCTAATGCTGCGGCGGAAGCTCGAGGAGCAGCAACAGGCGGCGGAGCTGCAGCAGGCTATTGATCTCCATAGCCGCCGCCTCATTGGCCTCCAGCTGCTCGACCTCAAGTCTTCTGCCGCTGTCCATGCGGCGGAGACGACAACAATGTCTCTGCCCACTCCGATCACCAATGCCTTCACCTCCGGCCAACCCGGTGCCACCACAATCGTCGAGTCACCGCCTAGCTCTACTGGGCAACTGATGGCGAGCTGCGGCTCTCCATCGGAGGGGAAAGTTGTCAATGGTGGTAATAAGGCGGATTCTGCCGGTGAGGTTACCCGCAATGCCGATAGTGACCAAAGTGGTGAGCACAACTTGCCAGACAGCCCGTTTGCTTCCTCTACCAAGTCGACCGCATTCTTTACCGCAACCGCTGCCACTGCCATTGGTAGCGAGGGAGATTTCACCACCGGTAGTAGCTGCAATATTGGTGGCAGTGCGGTCGGCAGCGCCAACCCTCTCCGGCCTCCCACATTGGACATACCTTCGCCAAGGACCTGCTTCTTCCCCATGCCCAGGCTGTCCGAGCACGGGGCGATCGGGATGTAA

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Protein seq

MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPQAASSSPTVPAAHSPFLLSRQNSGRCPAPSPSSWAQAQPFSRSNSMGNGGAADEMVGAGEELMSPLNGGGGAAANAPPFFPRGGDALLDDFELQEQLAFLHDGAGGVNPGHALQAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSASVNELCLGGDGFGWKPCLYYARGFCKNGSTCRFVHGGLSDDAAMDATTAEQQQCQDFLLRSKSQRLGPAAFPFTPTGSLPASPSATSKCLSLLLQQQQQHNDNQRAAAAALMLAGGDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDFCCMSPTGLDARDPFDFHQLGARMLQHSNSANELMLRRKLEEQQQAAELQQAIDLHSRRLIGLQLLDLKSSAAVHAAETTTMSLPTPITNAFTSGQPGATTIVESPPSSTGQLMASCGSPSEGKVVNGGNKADSAGEVTRNADSDQSGEHNLPDSPFASSTKSTAFFTATAATAIGSEGDFTTGSSCNIGGSAVGSANPLRPPTLDIPSPRTCFFPMPRLSEHGAIGM

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Gene Transcript Chromosome Start End Strand Source
Os03g0329200 Os03t0329200-02 Chr03 12070980 12071893 + irgsp1_rep
CDS seq

TTGCCAGACAGCCCGTTTGCTTCCTCTACCAAGTCGACCGCATTCTTTACCGCAACCGCTGCCACTGCCATTGGTAGCGAGGGAGATTTCACCACCGGTAGTAGCTGCAATATTGGTGGCAGTGCGGTCGGCAGCGCCAACCCTCTCCGGCCTCCCACATTGGACATACCTTCGCCAAGGACCTGCTTCTTCCCCATGCCCAGGCTGTCCGAGCACGGGGCGATCGGGATGTAA

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Protein seq

LPDSPFASSTKSTAFFTATAATAIGSEGDFTTGSSCNIGGSAVGSANPLRPPTLDIPSPRTCFFPMPRLSEHGAIGM

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0329200 RBH 0.0 0.0 0.821183
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g21160 RBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os07g0682400 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0016400 RBH 0.000000 0.000000 1.467932
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0016240 RBH 0.0 0.000000 0.208319
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0016260 RBH 0.0 5.125540 1.315426
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0016250 RBH 0.0 0.225846 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0016040 RBH 0.0 3.974891 0.775288
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0200000 RBH 3.0880915 2.4818175 10.733027
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0015920 RBH 0.0 0.264744 0.040783
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0204300 RBH 3.155404 0.547943 74.215679
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0016180 RBH 0.000000 0.040195 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0016190 RBH 0.0 1.998707 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0016230 RBH 0.0 5.283415 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0016110 RBH 0.0 0.078971 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0016030 RBH 0.0 2.170880 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G015990 RBH 0.0 1.955913 1.754607
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0015910 RBH 0.0 0.000000 0.277550
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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