Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0147001 | OGI:03007070 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:2613684-2615443 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGTTCAGAATTATTTCGAGTTGGGGCGAGCTAATCCCATCCCAGAGGTCATCGAGCACCTCTGACCTCTCACACTCGTGCCACTCCCGCCGATGTGGGACTACCTCCAAGCCCCCAGGTACCTGCTCGTCGTCTTCAACGACGTGCCCGTCGAGCAGGTGCACCCGTCTCAGCCATGGCGACGCCTTCACGACATGCTTAACAAACCCGATTTGCCACCCCACCAGCTCATTCAGGCAATGGTACTGACGCTCTTGTGCTTGCACGTCTACCCAAGAAGCCATCTTTTCCGACGTGTTGTCAATCTGCATTCAGATTTCGAAATTGTTGGTACAGATGTAATCAAGAAGAAATGGAAGTGTATAATAGGAGAATAAAGACACGTTTGTGATGTATATATGATCAATAAACTGCATACATGAACATGGCATGACTCCAGGACAGGGGCGGCGTCAAGGAGGGCGACAATCCAGAATATATCCCAAATCATTGGCACGTTTGCAATGAATAGCTTTCTGAGATGACTCAACGGGCTGGGTAGAGCCATTGGCTCAATCCACACCTGCACACAAGAAAAGGCAACGCAATTTCACTTAGAGACGAGAGGCCAAATATACTGTTAGCACATTTCAAGAATATATATAGATCGCTCACCTCAGGCCCTTTGAACTGCAGAACGAGGCTCTCTACAGGCGGCATCCTCTTGACGAATTTGCTCCATGGATATGTTGTGTGGCTAACAGAGGGGCCAATGTTGTTGCCTGCGGTTTACAAGTAGTCCAAACTCACATGCCTAAGCTGAGGCACCTCACCATAGTACAGTTTGGTTGGCTGCTGGCCCCGGCAAACAAAAGTTTCAAGACAAGGGAGCACATCCAGATAGATTTTCCCAAATTTGCAGTTGTCCACCAGCAAATTCTTTAATCTAGATGTTGGCACATTGAAACGAAGAGGACAGTCAAATACTGGATCATATCTGATACTAAAGTCCACTAGATGCACACAGTTTCTCAAAATACTAACAGCCGCTCCAAGAAATGATCTTTTACCCAAGGAGAGTTTGGTGAGCCTCCGAAACGCCAAGGAAGTAAATATACCAATTGGACAGCACTAGCCGTTCCAGCTGCACATTCTGGGATCCATCCAGTATCTTGCGAAAGTTAAGGCTGACGCCGGGTTCTTCAACGTCGAGCTCAAAATCTTTGACTCCCCACCTGCCGATCGTGGCGATAATCCATCTCTGAATGAATACACTCCACCCTCTGCCAAAGGTATGAAGCCTTAGCTTTTGGATAGTCCGGTGCACGCCATCGGGAGGTAGAAGAAACGCATTCACCCGCTTGACATAGGAACGCATTGCCTGACGTTTGTAGCGTTCCAGAATAGCTTCGAGTACACTGATTATCCTAATCCGCCGATCATTGTGGTCCTCCGTGGTGTAAATGTCAGCCAGCCTCTGATCCATAGGGCCCTTGCTGGCCAGCTTCAGGGCATCCTTCTCCGCCGCAAACGTCGCCTTGGCCTCTTTCCACATTCGCTTCACCCTATGGTAGCGTGGAGGGAGGAAATCATCAACGGTGAGGTCATAGCATGTCATGGAGCGCCGAGGAAGATTTTTCCATCTCTTCGAAATGATAGTTGCGATTATTGTTGTGTGTGGATCTAGCTTGTCGAGGATCAGGGCGAGTATATATCATCAGGTAAGCTACTGATCATGTCCTCCCCCTCGTAGTAGTTGTGCTCCTTGCTCATACGCATC
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| CDS seq | ATGACATGCTATGACCTCACCGTTGATGATTTCCTCCCTCCACGCTACCATAGGGTGAAGCGAATGTGGAAAGAGGCCAAGGCGACGTTTGCGGCGGAGAAGGATGCCCTGAAGCTGGCCAGCAAGGGCCCTATGGATCAGAGGCTGGCTGACATTTACACCACGGAGGACCACAATGATCGGCGGATTAGGATAATCAGTGTACTCGAAGCTATTCTGGAACGCTACAAACGTCAGGCAATGCGTTCCTATGTCAAGCGGGTGAATGCGTTTCTTCTACCTCCCGATGGCGTGCACCGGACTATCCAAAAGCTAAGGCTTCATACCTTTGGCAGAGGGTGGAGTGTATTCATTCAGAGATGGATTATCGCCACGATCGGCAGGTGGGGAGTCAAAGATTTTGAGCTCGACGTTGAAGAACCCGGCGTCAGCCTTAACTTTCGCAAGATACTGGATGGATCCCAGAATGTGCAGCTGGAACGGCTAGTGCTGTCCAATTGGTATATTTACTTCCTTGGCGTTTCGGAGGCTCACCAAACTCTCCTTGGGTAA
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| Protein seq | MTCYDLTVDDFLPPRYHRVKRMWKEAKATFAAEKDALKLASKGPMDQRLADIYTTEDHNDRRIRIISVLEAILERYKRQAMRSYVKRVNAFLLPPDGVHRTIQKLRLHTFGRGWSVFIQRWIIATIGRWGVKDFELDVEEPGVSLNFRKILDGSQNVQLERLVLSNWYIYFLGVSEAHQTLLG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0147001 | Os03t0147001-00 | Chr03 | 2613684 | 2615443 | - | irgsp1_rep | ||
| CDS seq | ATGACATGCTATGACCTCACCGTTGATGATTTCCTCCCTCCACGCTACCATAGGGTGAAGCGAATGTGGAAAGAGGCCAAGGCGACGTTTGCGGCGGAGAAGGATGCCCTGAAGCTGGCCAGCAAGGGCCCTATGGATCAGAGGCTGGCTGACATTTACACCACGGAGGACCACAATGATCGGCGGATTAGGATAATCAGTGTACTCGAAGCTATTCTGGAACGCTACAAACGTCAGGCAATGCGTTCCTATGTCAAGCGGGTGAATGCGTTTCTTCTACCTCCCGATGGCGTGCACCGGACTATCCAAAAGCTAAGGCTTCATACCTTTGGCAGAGGGTGGAGTGTATTCATTCAGAGATGGATTATCGCCACGATCGGCAGGTGGGGAGTCAAAGATTTTGAGCTCGACGTTGAAGAACCCGGCGTCAGCCTTAACTTTCGCAAGATACTGGATGGATCCCAGAATGTGCAGCTGGAACGGCTAGTGCTGTCCAATTGGTATATTTACTTCCTTGGCGTTTCGGAGGCTCACCAAACTCTCCTTGGGTAA
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| Protein seq | MTCYDLTVDDFLPPRYHRVKRMWKEAKATFAAEKDALKLASKGPMDQRLADIYTTEDHNDRRIRIISVLEAILERYKRQAMRSYVKRVNAFLLPPDGVHRTIQKLRLHTFGRGWSVFIQRWIIATIGRWGVKDFELDVEEPGVSLNFRKILDGSQNVQLERLVLSNWYIYFLGVSEAHQTLLG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0147001 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g05340 | SBH | 0.660506 | 0.463661 | 0.165043 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0003680 | SBH | 0.0 | 0.0 | 0.319725 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0003600 | SBH | 0.000000 | 0.0 | 0.259441 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0003640 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0003580 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0003680 | RBH | 0.0 | 0.000000 | 0.388385 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0042200 | RBH | 2.410106 | 6.558276 | 4.3182935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0003580 | SBH | 0.0 | 0.0 | 0.030510 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0042600 | RBH | 0.173586 | 0.0872425 | 0.2640415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0003680 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0003660 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0003620 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0003680 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0003670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G003630 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0003490 | RBH | 0.0 | 0.000000 | 0.167171 |
