Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_03g0003680 OGI:03007070 | 16/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr03:2697916-2704449
Gene Symbol -
DNA seq

ctactggtatgcactctgtactacatacaagtaatacgtgtgcaagaattattacagacatggctcatgagggtgaattcactgaattgtaatcattgagagtattgtggagcaggtttcagttaatggaaagctaatgtctgttgatgcaaaattgcactgatttaggtacaaaaggcacttttaactaaagaaatgatttcctgcagaaagcccctcaaatctcaaagaggcaccaatacttccaaataaaagcacccaatgggagcttcctcttctcccccctcttaagcccacgtatgctcaagggcagggcacactccacattatccatgcatatgcatcatgtaatccacaagatcttcttagcttatgtcatgcgataactaccatcatcttgttcttaattttggagtgtgtccgtgcaatgggtggccgtgcttcacacgcctatagagcgtgggctaatggtggccatggaggctagctaagctacttcttcttcttggggaggaatggctatgcatggcctccatagtcgacgacttttacctctactaaggtagggcaacttgtatcctttggcaattattcggtggatgtctgttggtggtggtgttggggattggagccggatgaatcttgagtttgatcttggctgtatgatgttagacataaagaggatggtgaaatggtatatggatgtacgatgtttgtgtttcggtccttgctctaataatcagttgttcttagtgttttgttttttttttttgccctctttgttaaattgtaaccaccctacatatatgtactagtatcaccaataaagtgatgaatttgatattagtaattaagattgtgtgtgcaaaatctgtgttgattcttccatcgataaacacgtccatcattcatgtatgatcttcaattccccgagttgtgttgtctactatgagcatgcagtatataccaggcagcagccgtagtccgaatcagaaggtgttcgtgccggccaaacgtccacagattagctgttcctattatgggtagttttatcagtcttaataaggtacagagatatttctagtgtgaaacttaggtatctctaggtacttgttggtatcttgatgtaagaaattttacagttcttgaaaaattacctcgaggtacctaaattttacactaaaatttttgataccctaaggtattaaattttacactaaaatttctaagtactttttcaaacatggtaaaattaccctcctcttaatatagcattagcaaatgatggcttggtttaaaaaaatctctcttaatccctttgttccaaaatataagtttggttggatatgtgacatatcatagtattataaagttggacagaaactaacttattcagattagtagtcctatgatatgtcacattgtcaatctagaattatttcaagttgtggggagtagatcccatcccggaggtcatcgagcacctctgacctctcaaactcgtgccactcccactgatgtgggactacctccaagcccccaatcacctgctcgtcgtcgtcttcaacgacgtgcccgtcgatcaggtgcacccgtctcaaccttggcgacgccttcatgacatgcttaacaaagccgatttgccaccccactgcactgaaaccgacgatggtgagatccttcaggcgatggtacagatgctgttgtgcttgcacctctagccaagaagccatctttaccgacccattgtcaatctgcatttaggtttcagagttcatgtgaattcacagatatattccattccgtaaaaaaaaaacagatatattccacaaaaaatgaagcggatctttaagagaaatgacatggttgttaggttataatatatatgatcaataaatttgcatacgtgaacatggcatggctccagggcaggcgcagcatcaagcaggaggacaatccagaatatatcccaattcattggcacatttgcaatgaatagcttcttgagatgaagcaacgggctgggtaaagctattggctcaatccaaacctgcacacaagaaaaagaaacacaattttcacttagagacaagagcccattactacacttatatttttcatttcaggaacatatgatttgcccacctccggccctttgaactgtagaacgaggctctctatcgatggcatactcatgacgaatttgctgagtcgatatgttgtgttgctaactgcagaaggctcaaccttggttttgaagtagtccaaactgacatgcctaagtcgaggcacctcgccatagtacacctcggtaggctgcacgccccggcaagcaaaagtttcaagccaaggcagcgaatccagatagatttccacaaattcgcagttgtcaaccagcaacttcttaaacccagaatctggcacactgaactgaagaataggctgggagcttcggcaatgtctgatactgaagtccaccagagacacacagtttgacagaatacgactagcccctccataatacgaagctttgcacaactcgagcttggtgagccaccgaagcatcaagcaatcaaatataccaatcggcttgcagttgatcagcacgagccgctttagccgcatgctctggcattcatccagcacacggaagtcatagtcgacgcggtgctcttcgacgtcgagctcgagatcctcggctccccacctgccgatcgccgcggtgacccatcgctggatgcactcgctccacctgccactgccgctacgggtctgaagccttagctttcggatagttctgcggacgccgtcgtcgggaggcggcagaaggaacgcgtccacccgcttgacgtagcggcgcatcgcgcagcgctcgtagcgtcgcatgatactttccaagagcgggcgggtcctcctcgtccactgctgcatcctctccttcgtctcctccgtggcgctcctcctcgccgccaggtacgccgccttctccgcctcgtacgccgcgctgccctccgtccacagccgcgcgcctcacccggtggtagcgtgggggggggggggggggggggaggatgtcgtcgacggcgaggtcgtagcacatgtgggagcgccgagggagacgaagccatcgcttcgagaggatggtggtggctatcgtcgatcgcgcgtctagcctgtcgaggatcaggagtatgtcgtcaggtaagctgctgatcatgtcctcgtcaatgttgtgctgatcttggctcatacgcatctagggaagaagaagatggaaccaacaagattacggtaattaacgtgagttcttgcagaaaatggggggagtggattctaatccctcgaggggatatcccctcgtatatctttcaaattcgatgcaaatagttgtgaaaaattctgaaaaaaattgacaatatagagtataatgatgcctactaatccaccaaaattcatgttcaaattcgatctacacatcgagaaacaaaaaagacaaatttagatataaacagtacgctactattcatacgctgaatttgaaatctcgacgtgtgagttgagtttggacttaagattttgtggagttatatatatatgttgtatgaatgttgtcaaatttttcataaccgtttagatggttattaaacaaacgaggaaacatcccctcgagagattagaatagtttcccgaaaatgagagactaaaaagtttctacagtaaaagtgaaaccctattttttctctacccgcttggaggaggaggcgccggtgactgtgcagacgtcgtaggcttcttgagacggcggtagcatcgtgcacttagtctcctctgaagccatctgatctgatcgtcagtggctgaccgagcgagcgggcggcggcggcggatctgagggtttgtacctgcatatatgcacggaagagtttatgccggcgtgctggaagttgcaggacatgggctgcccgcatgcatatgtttacctaaagccagcttataaaaatctagaaaaactaggtttctcagctttgtttagtttattttctgaattctacaactgcttgttagaatctagactaaaattaagccggactatttgagagagcttttgattctaggagaagctgcagcagctagaagctcccccaaacaagatattccagaagttcccttacatatatccagccttctccctaataatctaagatgcaagtgtctaaggttggagaaataatgcaaaatcgcaaaccgaatccaatcgatttgtatggcaaacgtgttaatctgacaagatgaacttagtttcttttggagaaaaaaagaacagaaaatcggcgaccgaatgggacaaaatgattgaaaaaaaacaaatctaaactttgtgatcttgcagttgtataaaaatgtagctagaacttttgattcatactccgtcttaaattcaatcaaaaaagacgcgaatattaagaaagtgcctaatatcaaatactaattagaaggggtgaggctacgaacccaggtcgtttagcccatcaccatgtggagctagccgaaagatctctaagcatttctcatcttaaattcaatcgtaaggtctttaagttttgtacatggtctaaattacgcacggaagaaccacccaacatggaagagcacagagttcagtaaccaaccagaacaaatctgaactccagattgccatagcattcttcagttccccaccctactctttgcaacttcaactttgaagaaaaacacagaaaaatgcaggttgcttcgtctgctatatctgcattcgtctcaatcaccctccgctcagcgacaacaaaaatgagcaagggcaaagacgcagcagcatgaacaaataacacacaagttcatttacaggtcaaacatcattttatactacactgttatgcataccctgtggctcagttaatcagttcagaattatttcgagttggggcgagctaatcccatcccagaggtcatcgagcacctctgacctctcacactcgtgccactcccgccgatgtgggactacctccaagcccccaggtacctgctcgtcgtcttcaacgacgtgcccgtcgagcaggtgcacccgtctcagccatggcgacgccttcacgacatgcttaacaaacccgatttgccaccccaccagctcattcaggcaatggtactgacgctcttgtgcttgcacgtctacccaagaagccatcttttccgacgtgttgtcaatctgcattcagatttcgaaattgttggtacagatgtaatcaagaagaaatggaagtgtataataggagaataaagacacgtttgtgatgtatatatgatcaataaactgcatacatgaacatggcatgactccaggacaggggcggcgtcaaggagggcgacaatccagaatatatcccaaatcattggcacgtttgcaatgaatagctttctgagatgactcaacgggctgggtagagccattggctcaatccacacctgcacacaagaaaaggcaacgcaatttcacttagagacgagaggccaaatatactgttagcacatttcaagaatatatatagatcgctcacctcaggccctttgaactgcagaacgaggctctctacaggcggcatcctcttgacgaatttgctccatggatatgttgtgtggctaacagaggggccaatgttgttgcctgcggtttacaagtagtccaaactcacatgcctaagctgaggcacctcaccatagtacagtttggttggctgctggccccggcaaacaaaagtttcaagacaagggagcacatccagatagattttcccaaatttgcagttgtccaccagcaaattctttaatctagatgttggcacattgaaacgaagaggacagtcaaatactggatcatatctgatactaaagtccactagatgcacacagtttctcaaaatactaacagccgctccaagaaatgatcttttacccaaggagagtttggtgagcctccgaaacgccaaggaagtaaatataccaattggacagcactagccgttccagctgcacattctgggatccatccagtatcttgcgaaagttaaggctgacgccgggttcttcaacgtcgagctcaaaatctttgactccccacctgccgatcgtggcgataatccatctctgaatgaatacactccaccctctgccaaaggtatgaagccttagcttttggatagtgcggtgcacgccatcgggaggtagaagaaacgcattcatacgcttgacataggaacgcattgcctgacgtttgtagcgttccagaatagcttcgagtacactgattatcctaatccgccgatcattgtggtcctccgtggtgtaaatgtcagccagcctctgatccatagggcccttgctggccagcttcagggcatccttctccgccgcaaacgtcgccttggcctctttccacattcgcttcaccctatggtagcgtggagggaggaaatcatcaacggtgaggtcatagcatgtcat

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CDS seq

atgacatgctatgacctcaccgttgatgatttcctccctccacgctaccatagggtgaagcgaatgtggaaagaggccaaggcgacgtttgcggcggagaaggatgccctgaagctggccagcaagggccctatggatcagaggctggctgacatttacaccacggaggaccacaatgatcggcggattaggataatcagtgtactcgaagctattctggaacgctacaaacgtcaggcaatgcgttcctatgtcaagcgtatgaatgcgtttcttctacctcccgatggcgtgcaccgcactatccaaaagctaaggcttcatacctttggcagagggtggagtgtattcattcagagatggattatcgccacgatcggcaggtggggagtcaaagattttgagctcgacgttgaagaacccggcgtcagccttaactttcgcaagatactggatggatcccagaatgtgcagctggaacggctagtgctgtccaattggtatatttacttccttggcgtttcggaggctcaccaaactctccttggattaaagaatttgctggtggacaactgcaaatttgggaaaatctatctggatgtgctcccttgtcttgaaacttttgtttgccggggccagcagccaaccaaactgtactatggtgaggtgcctcagcttaggcatgtgtggattgagccaatggctctacccagcccgttgagtcatctcagaaagctattcattgcaaacgtgccaatgatttgggatatattctggattgtcgccctccttgacgccgcccctgtcctggagtcatgccatgttcatattgacaacacgtcggaaaagatggcttcttgggtagacgtgcaagcacaagagcgtcagtaccattgcctgaatgagctggtggggtggcaaatcgggtttgttaagcatgtcgtgaaggcgtcgccatggctgagacgggtgcacctgctcgacgggcacgtcgttgaagacgacgagcagggcagcgcggcgtacgaggcggagaaggcggcgtacctggcggcgaggaggagcgccacggaggagacgaaggagaggatgcagcagtggacgaggaggacccgcccgctcttggaaagtatcatgcgacgctacgagcgctgcgcgatgcgccgctacgtcaagcgggtggacgcgttccttctgccgcctcccgacgacggcgtccgcagaactatccgaaagctaaggcttcagacccgtagcggcagtggcaggtggagcgagtgcatccagcgatgggtcaccgcggcgatcggcaggtggggagccgaggatctcgagctcgacgtcgaagagcaccgcgtcgactatgacttccgtgtgctggatgaatgccagagcatgcggctaaagcggctcgtgctgatcaactgcaagccgattggtatatttgattgcttgatgcttcggtggctcaccaagctcgagttgtgcaaagcttcgtattatggaggggctagtcgtattctgtcaaactgtgtgtctctggtggacttcagtatcagacattgccgaagctcccagcctattcttcagttcagtgtgccagattctgggtttaagaagttgctggttgacaactgcgaatttgtggaaatctatctggattcgctgccttggcttgaaacttttgcttgccggggcgtgcagcctaccgaggtgtactatggcgaggtgcctcgacttaggcatgtcagtttggactacttcaaaaccaaggttgagccttctgcagttagcaacacaacatatcgactcagcaaattcgtcatgagtatgccatcgatagagagcctcgttctacagttcaaagggccggaggtttggattgagccaatagctttacccagcccgttgcttcatctcaagaagctattcattgcaaatgtgccaatgaattgggatatattctggattgtcctcctgcttgatgctgcgcctgccctggagccatgccatgttcacattgacaatgggtcggtaaagatggcttcttggctagaggtgcaagcacaacagcatctgtaccatcgcctgaaggatctcaccatcgtcggtttcagtgcagtggggtggcaaatcggctttgttaagcatgtcatgaaggcgtcgccaaggttgagacgggtgcacctgatcgacgggcacgtcgttgaagacgacgacgagcaggtgattgggggcttggagccaagatcaaactcaagattcatccggctccaatccccaacaccaccaccaacagacatccaccgaataattgccaaaggatacaagttgccctaccttagtagagtacagagtgcataccagtag

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Protein seq

MTCYDLTVDDFLPPRYHRVKRMWKEAKATFAAEKDALKLASKGPMDQRLADIYTTEDHNDRRIRIISVLEAILERYKRQAMRSYVKRMNAFLLPPDGVHRTIQKLRLHTFGRGWSVFIQRWIIATIGRWGVKDFELDVEEPGVSLNFRKILDGSQNVQLERLVLSNWYIYFLGVSEAHQTLLGLKNLLVDNCKFGKIYLDVLPCLETFVCRGQQPTKLYYGEVPQLRHVWIEPMALPSPLSHLRKLFIANVPMIWDIFWIVALLDAAPVLESCHVHIDNTSEKMASWVDVQAQERQYHCLNELVGWQIGFVKHVVKASPWLRRVHLLDGHVVEDDEQGSAAYEAEKAAYLAARRSATEETKERMQQWTRRTRPLLESIMRRYERCAMRRYVKRVDAFLLPPPDDGVRRTIRKLRLQTRSGSGRWSECIQRWVTAAIGRWGAEDLELDVEEHRVDYDFRVLDECQSMRLKRLVLINCKPIGIFDCLMLRWLTKLELCKASYYGGASRILSNCVSLVDFSIRHCRSSQPILQFSVPDSGFKKLLVDNCEFVEIYLDSLPWLETFACRGVQPTEVYYGEVPRLRHVSLDYFKTKVEPSAVSNTTYRLSKFVMSMPSIESLVLQFKGPEVWIEPIALPSPLLHLKKLFIANVPMNWDIFWIVLLLDAAPALEPCHVHIDNGSVKMASWLEVQAQQHLYHRLKDLTIVGFSAVGWQIGFVKHVMKASPRLRRVHLIDGHVVEDDDEQVIGGLEPRSNSRFIRLQSPTPPPTDIHRIIAKGYKLPYLSRVQSAYQ

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_03g0003680 OsLima_03g0003680.01 Chr03 2697916 2704449 - NAM
CDS seq

atgacatgctatgacctcaccgttgatgatttcctccctccacgctaccatagggtgaagcgaatgtggaaagaggccaaggcgacgtttgcggcggagaaggatgccctgaagctggccagcaagggccctatggatcagaggctggctgacatttacaccacggaggaccacaatgatcggcggattaggataatcagtgtactcgaagctattctggaacgctacaaacgtcaggcaatgcgttcctatgtcaagcgtatgaatgcgtttcttctacctcccgatggcgtgcaccgcactatccaaaagctaaggcttcatacctttggcagagggtggagtgtattcattcagagatggattatcgccacgatcggcaggtggggagtcaaagattttgagctcgacgttgaagaacccggcgtcagccttaactttcgcaagatactggatggatcccagaatgtgcagctggaacggctagtgctgtccaattggtatatttacttccttggcgtttcggaggctcaccaaactctccttggattaaagaatttgctggtggacaactgcaaatttgggaaaatctatctggatgtgctcccttgtcttgaaacttttgtttgccggggccagcagccaaccaaactgtactatggtgaggtgcctcagcttaggcatgtgtggattgagccaatggctctacccagcccgttgagtcatctcagaaagctattcattgcaaacgtgccaatgatttgggatatattctggattgtcgccctccttgacgccgcccctgtcctggagtcatgccatgttcatattgacaacacgtcggaaaagatggcttcttgggtagacgtgcaagcacaagagcgtcagtaccattgcctgaatgagctggtggggtggcaaatcgggtttgttaagcatgtcgtgaaggcgtcgccatggctgagacgggtgcacctgctcgacgggcacgtcgttgaagacgacgagcagggcagcgcggcgtacgaggcggagaaggcggcgtacctggcggcgaggaggagcgccacggaggagacgaaggagaggatgcagcagtggacgaggaggacccgcccgctcttggaaagtatcatgcgacgctacgagcgctgcgcgatgcgccgctacgtcaagcgggtggacgcgttccttctgccgcctcccgacgacggcgtccgcagaactatccgaaagctaaggcttcagacccgtagcggcagtggcaggtggagcgagtgcatccagcgatgggtcaccgcggcgatcggcaggtggggagccgaggatctcgagctcgacgtcgaagagcaccgcgtcgactatgacttccgtgtgctggatgaatgccagagcatgcggctaaagcggctcgtgctgatcaactgcaagccgattggtatatttgattgcttgatgcttcggtggctcaccaagctcgagttgtgcaaagcttcgtattatggaggggctagtcgtattctgtcaaactgtgtgtctctggtggacttcagtatcagacattgccgaagctcccagcctattcttcagttcagtgtgccagattctgggtttaagaagttgctggttgacaactgcgaatttgtggaaatctatctggattcgctgccttggcttgaaacttttgcttgccggggcgtgcagcctaccgaggtgtactatggcgaggtgcctcgacttaggcatgtcagtttggactacttcaaaaccaaggttgagccttctgcagttagcaacacaacatatcgactcagcaaattcgtcatgagtatgccatcgatagagagcctcgttctacagttcaaagggccggaggtttggattgagccaatagctttacccagcccgttgcttcatctcaagaagctattcattgcaaatgtgccaatgaattgggatatattctggattgtcctcctgcttgatgctgcgcctgccctggagccatgccatgttcacattgacaatgggtcggtaaagatggcttcttggctagaggtgcaagcacaacagcatctgtaccatcgcctgaaggatctcaccatcgtcggtttcagtgcagtggggtggcaaatcggctttgttaagcatgtcatgaaggcgtcgccaaggttgagacgggtgcacctgatcgacgggcacgtcgttgaagacgacgacgagcaggtgattgggggcttggagccaagatcaaactcaagattcatccggctccaatccccaacaccaccaccaacagacatccaccgaataattgccaaaggatacaagttgccctaccttagtagagtacagagtgcataccagtag

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Protein seq

MTCYDLTVDDFLPPRYHRVKRMWKEAKATFAAEKDALKLASKGPMDQRLADIYTTEDHNDRRIRIISVLEAILERYKRQAMRSYVKRMNAFLLPPDGVHRTIQKLRLHTFGRGWSVFIQRWIIATIGRWGVKDFELDVEEPGVSLNFRKILDGSQNVQLERLVLSNWYIYFLGVSEAHQTLLGLKNLLVDNCKFGKIYLDVLPCLETFVCRGQQPTKLYYGEVPQLRHVWIEPMALPSPLSHLRKLFIANVPMIWDIFWIVALLDAAPVLESCHVHIDNTSEKMASWVDVQAQERQYHCLNELVGWQIGFVKHVVKASPWLRRVHLLDGHVVEDDEQGSAAYEAEKAAYLAARRSATEETKERMQQWTRRTRPLLESIMRRYERCAMRRYVKRVDAFLLPPPDDGVRRTIRKLRLQTRSGSGRWSECIQRWVTAAIGRWGAEDLELDVEEHRVDYDFRVLDECQSMRLKRLVLINCKPIGIFDCLMLRWLTKLELCKASYYGGASRILSNCVSLVDFSIRHCRSSQPILQFSVPDSGFKKLLVDNCEFVEIYLDSLPWLETFACRGVQPTEVYYGEVPRLRHVSLDYFKTKVEPSAVSNTTYRLSKFVMSMPSIESLVLQFKGPEVWIEPIALPSPLLHLKKLFIANVPMNWDIFWIVLLLDAAPALEPCHVHIDNGSVKMASWLEVQAQQHLYHRLKDLTIVGFSAVGWQIGFVKHVMKASPRLRRVHLIDGHVVEDDDEQVIGGLEPRSNSRFIRLQSPTPPPTDIHRIIAKGYKLPYLSRVQSAYQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0146900 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g05340 SBH 0.660506 0.463661 0.165043
Nipponbare | IRGSP 1.0 | RAP-db Os03g0146900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0003680 RBH 0.0 0.0 0.319725
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0003600 RBH 0.000000 0.0 0.259441
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0003640 RBH 0.0 0.0 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0003580 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0003680 RBH 0.0 0.000000 0.388385
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0042200 RBH 2.410106 6.558276 4.3182935
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0003580 RBH 0.0 0.0 0.030510
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0042600 RBH 0.173586 0.0872425 0.2640415
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0003660 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0003620 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0003680 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0003670 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G003630 RBH 0.000000 0.000000 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0003490 RBH 0.0 0.000000 0.167171
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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