Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0814600 | OGI:02098130 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:34907672-34910812 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAGGCAAAATCTATTCAATATCCAGTTTGACAATCTGCATGAACTGTCAGTCAATGTGTCATCTGGCTAAATTTTCCATCACGCAAAAATGTATATCATACATGGAAATAACTACAGCGGTCAGTTTGGAAAATAAATTACTCTGAAATATCAGTGCATACTGCAAATCTCCTGCACTGTCTTGAACTGTGGCCCATGGCTACTGCCACTACTGAATTGTCAGTTGAGTTCTTTGAACATGGAATGTGTAGAGACATTGAATCCTTTCAGAAATCTCACCTAGAATGAAAAAAAAATAAGCATGCTTGGAAACATACGAGCAATTTGAAGTTTGAGAAAGAGGGTAGTTTTAAGTTATGGCTATCAAATAACTTACAGTTCTTTCATTAAAAAAAACACAAATTTACTTACAGTTTTGATGCTGGTCTATTCCATCTCCTCCGCAATTGCATTTTCTGTGAAATGAAGGATAAGAGCTGATATCACAATTTGCAAATGTAACATAGCCTGCATAGACTCAGCTGTTGGTAACATACCGGTCTTTGGAAGCAGCTTCACCGAGTTGCTTATCTATTTCAACAAGGTATATCTTAAACAAGCTTGACCTATAGGATCCATTACAGGCTAAATTACCATAATAATGATGCCACAGAACAGGCCATAGCATAAGGTGAAAAGCAAGCAGCTCACCGTGGCGGCATTGCTGCAGCAGTAAGAACTGGAGGTAGAAGCCATAATATGTACGGTTCGCTCTCTAATGATTGCCTTGCATACTCACAAATATCCATCTCCTATTGGAGTTCAAAGGTTCAGTTAAAATATTACTTTCTTTAAAGAACAGCGATTAACAGCTTTGAGAAATAAAGAACTTAAACAATTCTTGCCCACTGAAAAAATAAGAGGTAAATAATGACCACACATGAAAGGACTTGATCTGGCCAACATTATGCCCGCTAAATATTTTTTTTGTTTCCTCAGGTATCTCAGAAAGGCTGCTTGATCGTAACCAACAAAACCAATAGGCAATTGCTAACTTCTAAAAGTAGTTTTTCACAATTATTGCAACATCAGAGTAGTGCCCTCAATAATTGACATAATGACGCTTTGATAGTACTGACAGTTCAAGTGTACTACCACCATTCCAAAATATAAGCATTTCTAGGATTCATATCCTGTACCACAACACAAGCATGTCTACCACCATTTACACTACTTGTCCCATCAATCACTTTCCGTTCAAATTTCTTTCCGTTCTACCCTCAACCACTATCCCTCCTTTATTGAGGGGCACCAAAGTCTTTTCTCCTCAACCTTAATCTCTACTAAAAAAAACTAGAAATGCATATATTTTGGAACAGGGGAAGTAGCTTTTAGAAGCTGTTCCCAAGTTTGTATAGGTATTCGTTTGGTTTACATGGTCATGATCACTTCATTTCAAAAGGTTCCCGCAGAAAGTAATGTTCCCAACAGATGGAAGAATCAACAAAATCCATCAACAAGACATAAAATAAAAATAAAAAGACCTTGAAACCAAGAAGCTTGTCTTGGCATTCATCCTGAGTTGTTCCTTGAAGCAACTGGTGCAGATCAGCATATTGTTTTGATATAGGAAAGGAACTAAAAGTATGTGACATGATGCTCTCTATTAATGAGTTCCATTGCCTTGCAACCAATCCCAACAAGCATAGCTCCTATAATGCAACACAACATATTGGTATTATAACATAGATAATGAAAGTACTGACAGAGTCTACGAGCAAAGACTAATACATACCATGACTTCAATGATGCCACTTTGACTAGAATCTGCAGAAACTTTTAATGGTTCAAACAATCCCATCCACTGCTCCTTGGGAGCATTAAAGATCATATTAGTTCCTGACATGATCCGAATGGTACGCTCATCAAGCAAGTACGACAAACACTTTGCTTTCCATTGCTTCCACAGGATAAACTTGTCGATGATTTGTGTTTTCCTGTGTTAATAATAGTTTTGAGTGAGTTCAAACTGGAGCCTGCTATGGTCTCAAAAAAAGGACACAGATATATATGGATTAACAATTGTAACAATATAGAAATTTGGGGGATTAAGGGATTACATACTGAGCAGTTGCTGAGGTGCACAATGTACTTCCTGCACTATCAAAGCTGTCCTTTTTCATGCTTTTTAGAAGTGTGTTCAGTTCTCTCTCAGCCAAAGAAATACACGATCCTGAATCCAGCTTCTTCTGTAGTTCTTTAAGTAGAATCTGTGAATTACCCGTAAACAAGGATTCTTCACAAAATTCATCAGAGCTAGTGGAATGTCCAACATCACGGGCATTCTTGGTTCGCATCAAACTAGGTAAATTCATATCTAAAATCGATTGCACATACTCTTGGCACACATTGCATTCACCACTAGCAGAAATGCCATCCATATCCATCTCAACAACTGCTTGAAGTACAGCACCTAAATTCTCCGCATTCGTTGTTTTCAGAAAATGCTTCACAACCAACTCTCTTGCCATCGCAAGTGTTTTTGATCGGATATCCTCAATACCCTGCATGACACAGGGTAGAACATCACTACATGCAAAATCAGAATGGATGCAGCCAAGAAGCATCTTTTCAGAAGCACCTTGGGGAAATTCGGGCTTGAAGCGAGTTGAACGAGTGCAGCATCGAGCTCACTTGCAGACTCATCGTACTGACCATCGTCACGCAGGTTCTTGAAAACCTGAACACAATGCAGGAACATGTGTTAACATTTCAGTTCTTCACAACAACAGAAATTCTTCATGTGGTCAGTGTCTGTCCATTAAAGTAGGAAAACCCCCCTCCTAAGCAGCATTGAGAACGATGAACTTCCAATCTACACGGCCTTCCCCCGAGATGCTGAGAGAATCATGGCGTCGGAGGGGGCACGACGCAAACCTAAACCCCAGTGCAATTTCATCAACAGAGATCAACCATACCTCCTCGAAGAAGAGGGCCCATTGGAGGGCCTTCTTGACGTCACCGGAGCGCCAGGTGGCGGCGGCGCCAGACGAGGTGCGGCCGCCGGCGAGGACGAGGACGTCGACGAAGCCCCGCACCAAGCCGAGCAACTCCTCCATGGCCACCGTCTCGTGCGCCCACCCCATTTGCGATCCCCTTCC
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| CDS seq | ATGGGGTGGGCGCACGAGACGGTGGCCATGGAGGAGTTGCTCGGCTTGGTGCGGGGCTTCGTCGACGTCCTCGTCCTCGCCGGCGGCCGCACCTCGTCTGGCGCCGCCGCCACCTGGCGCTCCGGTGACGTCAAGAAGGCCCTCCAATGGGCCCTCTTCTTCGAGGAGGTTTTCAAGAACCTGCGTGACGATGGTCAGTACGATGAGTCTGCAAGTGAGCTCGATGCTGCACTCGTTCAACTCGCTTCAAGCCCGAATTTCCCCAAGGGTATTGAGGATATCCGATCAAAAACACTTGCGATGGCAAGAGAGTTGGTTGTGAAGCATTTTCTGAAAACAACGAATGCGGAGAATTTAGGTGCTGTACTTCAAGCAGTTGTTGAGATGGATATGGATGGCATTTCTGCTAGTGGTGAATGCAATGTGTGCCAAGAGTATGTGCAATCGATTTTAGATATGAATTTACCTAGTTTGATGCGAACCAAGAATGCCCGTGATGTTGGACATTCCACTAGCTCTGATGAATTTTGTGAAGAATCCTTGTTTACGGGTAATTCACAGATTCTACTTAAAGAACTACAGAAGAAGCTGGATTCAGGATCGTGTATTTCTTTGGCTGAGAGAGAACTGAACACACTTCTAAAAAGCATGAAAAAGGACAGCTTTGATAGTGCAGGAAGTACATTGTGCACCTCAGCAACTGCTCAGAAAACACAAATCATCGACAAGTTTATCCTGTGGAAGCAATGGAAAGCAAAGTGTTTGTCGTACTTGCTTGATGAGCGTACCATTCGGATCATGTCAGGAACTAATATGATCTTTAATGCTCCCAAGGAGCAGTGGATGGGATTGTTTGAACCATTAAAAGTTTCTGCAGATTCTAGTCAAAGTGGCATCATTGAAGTCATGGAGCTATGCTTGTTGGGATTGGTTGCAAGGCAATGGAACTCATTAATAGAGAGCATCATGTCACATACTTTTAGTTCCTTTCCTATATCAAAACAATATGCTGATCTGCACCAGTTGCTTCAAGGAACAACTCAGGATGAATGCCAAGACAAGCTTCTTGGTTTCAAGGAGATGGATATTTGTGAGTATGCAAGGCAATCATTAGAGAGCGAACCGTACATATTATGGCTTCTACCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGTTTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAAAATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGATTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAG
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| Protein seq | MGWAHETVAMEELLGLVRGFVDVLVLAGGRTSSGAAATWRSGDVKKALQWALFFEEVFKNLRDDGQYDESASELDAALVQLASSPNFPKGIEDIRSKTLAMARELVVKHFLKTTNAENLGAVLQAVVEMDMDGISASGECNVCQEYVQSILDMNLPSLMRTKNARDVGHSTSSDEFCEESLFTGNSQILLKELQKKLDSGSCISLAERELNTLLKSMKKDSFDSAGSTLCTSATAQKTQIIDKFILWKQWKAKCLSYLLDERTIRIMSGTNMIFNAPKEQWMGLFEPLKVSADSSQSGIIEVMELCLLGLVARQWNSLIESIMSHTFSSFPISKQYADLHQLLQGTTQDECQDKLLGFKEMDICEYARQSLESEPYILWLLPPVLTAAAMPPRSSLFKIYLVEIDKQLGEAASKDRKCNCGGDGIDQHQNCEISERIQCLYTFHVQRTQLTIQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0814600 | Os02t0814600-01 | Chr02 | 34907672 | 34910812 | - | irgsp1_rep | ||
| CDS seq | ATGGGGTGGGCGCACGAGACGGTGGCCATGGAGGAGTTGCTCGGCTTGGTGCGGGGCTTCGTCGACGTCCTCGTCCTCGCCGGCGGCCGCACCTCGTCTGGCGCCGCCGCCACCTGGCGCTCCGGTGACGTCAAGAAGGCCCTCCAATGGGCCCTCTTCTTCGAGGAGGTTTTCAAGAACCTGCGTGACGATGGTCAGTACGATGAGTCTGCAAGTGAGCTCGATGCTGCACTCGTTCAACTCGCTTCAAGCCCGAATTTCCCCAAGGGTATTGAGGATATCCGATCAAAAACACTTGCGATGGCAAGAGAGTTGGTTGTGAAGCATTTTCTGAAAACAACGAATGCGGAGAATTTAGGTGCTGTACTTCAAGCAGTTGTTGAGATGGATATGGATGGCATTTCTGCTAGTGGTGAATGCAATGTGTGCCAAGAGTATGTGCAATCGATTTTAGATATGAATTTACCTAGTTTGATGCGAACCAAGAATGCCCGTGATGTTGGACATTCCACTAGCTCTGATGAATTTTGTGAAGAATCCTTGTTTACGGGTAATTCACAGATTCTACTTAAAGAACTACAGAAGAAGCTGGATTCAGGATCGTGTATTTCTTTGGCTGAGAGAGAACTGAACACACTTCTAAAAAGCATGAAAAAGGACAGCTTTGATAGTGCAGGAAGTACATTGTGCACCTCAGCAACTGCTCAGAAAACACAAATCATCGACAAGTTTATCCTGTGGAAGCAATGGAAAGCAAAGTGTTTGTCGTACTTGCTTGATGAGCGTACCATTCGGATCATGTCAGGAACTAATATGATCTTTAATGCTCCCAAGGAGCAGTGGATGGGATTGTTTGAACCATTAAAAGTTTCTGCAGATTCTAGTCAAAGTGGCATCATTGAAGTCATGGAGCTATGCTTGTTGGGATTGGTTGCAAGGCAATGGAACTCATTAATAGAGAGCATCATGTCACATACTTTTAGTTCCTTTCCTATATCAAAACAATATGCTGATCTGCACCAGTTGCTTCAAGGAACAACTCAGGATGAATGCCAAGACAAGCTTCTTGGTTTCAAGGAGATGGATATTTGTGAGTATGCAAGGCAATCATTAGAGAGCGAACCGTACATATTATGGCTTCTACCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGTTTAAGATATACCTTGTTGAAATAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAAAATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAACTGTGAGATTTCTGAAAGGATTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAG
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| Protein seq | MGWAHETVAMEELLGLVRGFVDVLVLAGGRTSSGAAATWRSGDVKKALQWALFFEEVFKNLRDDGQYDESASELDAALVQLASSPNFPKGIEDIRSKTLAMARELVVKHFLKTTNAENLGAVLQAVVEMDMDGISASGECNVCQEYVQSILDMNLPSLMRTKNARDVGHSTSSDEFCEESLFTGNSQILLKELQKKLDSGSCISLAERELNTLLKSMKKDSFDSAGSTLCTSATAQKTQIIDKFILWKQWKAKCLSYLLDERTIRIMSGTNMIFNAPKEQWMGLFEPLKVSADSSQSGIIEVMELCLLGLVARQWNSLIESIMSHTFSSFPISKQYADLHQLLQGTTQDECQDKLLGFKEMDICEYARQSLESEPYILWLLPPVLTAAAMPPRSSLFKIYLVEIDKQLGEAASKDRKCNCGGDGIDQHQNCEISERIQCLYTFHVQRTQLTIQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0814600 | RBH | 0.000000 | 0.0 | 0.205891 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g56950 | RBH | 0.000000 | 0.000000 | 0.044334 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0038390 | RBH | 0.148750 | 2.597258 | 0.503340 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0038420 | RBH | 0.073274 | 0.182887 | 0.283376 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0038260 | RBH | 0.479309 | 3.140049 | 2.741122 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0037890 | RBH | 0.000000 | 0.090814 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0037980 | RBH | 0.352233 | 17.151884 | 4.184102 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0569000 | RBH | 1.0270805 | 4.3707485 | 1.920463 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0037660 | RBH | 0.056928 | 0.936991 | 0.843145 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0599600 | RBH | 2.7211715 | 5.015536 | 9.6388105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0037950 | RBH | 0.0 | 0.270810 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0037880 | RBH | 0.000000 | 7.549254 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0037980 | RBH | 0.000000 | 1.823877 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0038000 | RBH | 0.0 | 0.807185 | 0.307217 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0037670 | RBH | 0.0 | 2.958622 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G038320 | RBH | 0.0 | 0.352947 | 0.348912 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0038180 | RBH | 0.0 | 11.228327 | 1.619877 |
