Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0681700 | OGI:02078530 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:27840042-27841235 | ||||||||
| Gene Symbol | RLCK83, OsRLCK83 | ||||||||||
| DNA seq | ACAGGATAATGATAGGAGTGACAAAGTATGCCAAATTGCCAATTGTCAAATGGCATTTGCATTTTTTTTAGTATTATGTATTTTCCTCTCTTTTTTTTTCTTTTGCAAAAGAACCAGTTGTGTGCCCATTTGATCTCAGAAATCAGAACCTGTCAGTACTCAGTAGGTTGTAGCAAGGTGGGTGTTGATGTTGGCAACATTGTCGCAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCTGCATCAACTCGGAAACCGGCGACTGCTACCTGGTGTACGAGTACGTGGAGAACGGCTCGCTGGACCTGTGGCTCATGGACCGCGACCGCGCGCGGCGGCTGGACTGGCGCGCGCGCCTCCACATCGCCCTCGACCTCGCCCACGGCTTGCAGTACATCCACGAGCACACCTGGCCGCGCGTGGTGCACAAGGACATCAAGAGCAGCAACGTCCTGCTCGACGACCGCATGCGCGCCAAGATCGCCAACTTCGGCCTCGCCAAGACCGGCCACAACGCCGTCACCACGCACATCGTCGGCACGCAGGGGTACATCGCGCCGGAGTACCTCGCCGACGGCCTCGTCACCACCAAGATGGACGTGTTCGCCTACGGCGTCGTCCTGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCGACGACAGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTGTTCCGCGGCCGGGAGGAGAGGCTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCCCGCCGGGCAGCGTCGCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCACCGTGACCCGGCGAAGCGCCCCAGCATGGTGGACGTGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCGGCGACTACTCGGGCGAGAGCGTGTCCGTCGCCAGCAGCGGCGGGATCGCAGCGCGGTGAGGTGTCGCGGGCCAATCATCCCCAGTGCCCGTGTTTGTTAGTGGTAGAACTTGTACTAGTAGTAAATAGCGAGTGGCGATAGAGAGCAGGTAGCTAAATAATCTCTGTCGTTACGTTACACGCGAGGTTGGGATTGTCAATTAGTTTTCGTGGGGAGAAGTTGGTTGTTACTTGCAACTCAGTTGTGCAGAAACTGCATATAGAACTATAGAAGCATCAAGCATTTCTGTGTC
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| CDS seq | ATGTTGGCAACATTGTCGCAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCTGCATCAACTCGGAAACCGGCGACTGCTACCTGGTGTACGAGTACGTGGAGAACGGCTCGCTGGACCTGTGGCTCATGGACCGCGACCGCGCGCGGCGGCTGGACTGGCGCGCGCGCCTCCACATCGCCCTCGACCTCGCCCACGGCTTGCAGTACATCCACGAGCACACCTGGCCGCGCGTGGTGCACAAGGACATCAAGAGCAGCAACGTCCTGCTCGACGACCGCATGCGCGCCAAGATCGCCAACTTCGGCCTCGCCAAGACCGGCCACAACGCCGTCACCACGCACATCGTCGGCACGCAGGGGTACATCGCGCCGGAGTACCTCGCCGACGGCCTCGTCACCACCAAGATGGACGTGTTCGCCTACGGCGTCGTCCTGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCGACGACAGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTGTTCCGCGGCCGGGAGGAGAGGCTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCCCGCCGGGCAGCGTCGCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCACCGTGACCCGGCGAAGCGCCCCAGCATGGTGGACGTGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCGGCGACTACTCGGGCGAGAGCGTGTCCGTCGCCAGCAGCGGCGGGATCGCAGCGCGGTGA
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| Protein seq | MLATLSQVNHSNLVKLEGFCINSETGDCYLVYEYVENGSLDLWLMDRDRARRLDWRARLHIALDLAHGLQYIHEHTWPRVVHKDIKSSNVLLDDRMRAKIANFGLAKTGHNAVTTHIVGTQGYIAPEYLADGLVTTKMDVFAYGVVLLELVSGREAVSDDSGEPLWADADERLFRGREERLEARVAAWMDPALAEQTCPPGSVASVVSVAKACLHRDPAKRPSMVDVAYTLSKADESFGDYSGESVSVASSGGIAAR |
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| Function | Protein LYK5 [UniProtKB/Swiss-Prot:O22808] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0681700 | Os02t0681700-01 | Chr02 | 27840042 | 27841235 | + | irgsp1_rep | ||
| CDS seq | ATGTTGGCAACATTGTCGCAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCTGCATCAACTCGGAAACCGGCGACTGCTACCTGGTGTACGAGTACGTGGAGAACGGCTCGCTGGACCTGTGGCTCATGGACCGCGACCGCGCGCGGCGGCTGGACTGGCGCGCGCGCCTCCACATCGCCCTCGACCTCGCCCACGGCTTGCAGTACATCCACGAGCACACCTGGCCGCGCGTGGTGCACAAGGACATCAAGAGCAGCAACGTCCTGCTCGACGACCGCATGCGCGCCAAGATCGCCAACTTCGGCCTCGCCAAGACCGGCCACAACGCCGTCACCACGCACATCGTCGGCACGCAGGGGTACATCGCGCCGGAGTACCTCGCCGACGGCCTCGTCACCACCAAGATGGACGTGTTCGCCTACGGCGTCGTCCTGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCGACGACAGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTGTTCCGCGGCCGGGAGGAGAGGCTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCCCGCCGGGCAGCGTCGCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCACCGTGACCCGGCGAAGCGCCCCAGCATGGTGGACGTGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCGGCGACTACTCGGGCGAGAGCGTGTCCGTCGCCAGCAGCGGCGGGATCGCAGCGCGGTGA
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| Protein seq | MLATLSQVNHSNLVKLEGFCINSETGDCYLVYEYVENGSLDLWLMDRDRARRLDWRARLHIALDLAHGLQYIHEHTWPRVVHKDIKSSNVLLDDRMRAKIANFGLAKTGHNAVTTHIVGTQGYIAPEYLADGLVTTKMDVFAYGVVLLELVSGREAVSDDSGEPLWADADERLFRGREERLEARVAAWMDPALAEQTCPPGSVASVVSVAKACLHRDPAKRPSMVDVAYTLSKADESFGDYSGESVSVASSGGIAAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0681700 | RBH | 0.407597 | 0.976845 | 0.744679 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45750 | RBH | 0.146598 | 0.637340 | 0.268801 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0540900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029120 | SBH | 0.079256 | 3.284269 | 4.278899 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029180 | SBH | 0.053225 | 3.129453 | 1.887396 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029050 | SBH | 0.722377 | 0.000000 | 2.549624 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028640 | RBH | 0.100764 | 0.043661 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028820 | SBH | 1.720152 | 2.281090 | 6.139847 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0451900 | SBH | 2.920158 | 11.957031 | 6.9850515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028620 | SBH | 0.275507 | 0.334719 | 0.179010 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0479800 | SBH | 2.3973285 | 10.086259 | 5.36481 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028950 | RBH | 0.127819 | 0.134881 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028680 | SBH | 0.221989 | 2.405707 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0028970 | RBH | 3.086077 | 21.537731 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028840 | RBH | 0.196802 | 0.000000 | 0.650987 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028510 | SBH | 0.000000 | 1.779821 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029090 | SBH | 0.325928 | 0.740572 | 1.178891 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028860 | SBH | 0.716538 | 1.706108 | 1.642218 |
