Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0680500 | OGI:02078330 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:27770811-27773155 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACAGATGCACTGATGTATCTTGTACACGGTACACCCAAAGTTGCATTTCTTTGCTTTCTCCGTAGCCGGTGCACGTAGGTACGTATGCAAAGAAATTAGCAAGGTATAGAACGGTTCAACTTCTAATCCATTTGCTGGGCCGCTCTCGCTCTCAGTCTCACTCCAAGCTCCGATGCTCTCCCTCTCCACTCCGTCGTCGCCTCCGCCTCCTCTTCCTCCTCGCCGCGCCACCACCGCTCCCACCCCCGTCAGCCTCCTCCGCGGGGCAGCTGACCGGCGGGATGCGCCGCTCACCTCCGCGCTCCACGCTGCCCTCCTCAAGTCCGGCGCGCTCGACCGTACCCAGCCTCTCACCGCGTCGAACTCTCTCCTGCACGCCTACCTCCAATGCGGCCTCCTCTCCGACGCGCTCCGCCTGCTCGACGAAATGCCCCGCCGCGACGCCGCCACCTGCGCCTCCCTCGTCTCCGCTCTCTGCCGCCTCGGCGCGCCCCTGGACGCCATCCGCGCCTACATGGACATGCTGACCCAGGATGCCGACGACGAGGACGGTGGCCTCCGCCCCAACGAGTTCACGGCGGCCGCTCTCCTTCAGGCTTGTGGGCTAGCCAAGGTCGCGAGGCTAGGGAGGATGGTGCATGGCCACCTCGTGACAAGTGGGTTTTGCTGTGACCCGTTTGTTGTTGGCTCGTTGGTCAATACGTACGCCAAGGTTGGGGATGTGGTGAGCGCAGAAAAGCTGCTTCTTGGAATGGATTCCAGGGATGTGGTTTCTTGGACTGCCCTGCTTTCAGGGTGCGTGCTTAATGGGATGCTAGCAGAAGCTCTCAAAGTGTTCGTCATGATGCTGGAGGATAACGTCCTTCCCAACAACGTTACAATGTTGAGTGTTATTCAGGCGTGCTCTTTGATGGGAGAGTCAGGATTGTTCAGTTCATTGCATGCGCTTGTTGTTCGCTTGGGGCTCGAGAATGATGTTTCAGTGGTGAATTCTCTCATCATAATGTATGCTAAGAATGGATTTGTTGAGGAGGCCACAGGTCTTTTTGAGGATTTGTACCTGAGGAGAGGAGATGTATGCCCTAATTCTGATGTTCTTTCTGCGCTTCTTTTTGGCTGCACTGTTTCAGGATCCTTGAAGTATGGAAAGGGAATCCATGCGCACTTGATTAAAATGAATGATTTGCCAAGCATTAGCATCGAAAACTCCCTGATGGGCATGTATGCTAGATTTGAGCAAGTTGATGCAGCATATGTGGTGTTCAAAGGTATGCAAATTAAGGATATTGTTTCGTGGAACACCATGATCTCATGCCTGGCAAAGAGTGATCATGTGGATGAAGCCTTGGAGCTTTTTAGTATTCTTCATGGTGGTGATGGACTTGTGCCTGACTTTGTCACTGTCTTGAGCGTAGTGCAGGCATGTTCTAATGCTGGATTACTGCAGCAAGGGCAGATGCTCCATGGATACATTATAAAGTCTGGATCTTTGTATGATGTCTCAATCTGCAATGCCCTGATAAGTATGTATGCTAAGTTGGGAAGAATTGATTTCTCTGAGCAGATATTTGAGCAGATGGATATTAAGGACATTGTTTCGTGGAACTCAATGATCAATGCTTATGGTATTCATGGAGATGGGCTATCATCTCTAAGGATTTTTAATGAGCTGCAGGATGATGGAACATGTTCACCCAATGCTATCACATTTGTGAGTCTGATATCGGCTTGCAGTCATTCTGGTTTGGTTTCAGAAGGCTACAGATGCTTTCAAAGCATGAAAAACGACTACAGAATTGAGCCTAGCATGGATCATTATGCTTCTGTAGTTGATCTACTTGGAAGATCTGGGAGGTTTGCTGAGGCAGAACAATTTATCAGAAACATGCCTGTTCATCCCAATTCATCCATTTGGGGACCTCTTCTGGCTGCTTGCTCTCTTTACGGGAACATTGATCTTGCAGAAAAAGCTGCTATAGAATTGTCAATCTTGGAACCGGAGAGTGACATATGGAGAGTCTCCTTGTCAAATGTCTATGCCGTTGTTGGGAGATGGAAGGACTCTGCAAAGATTAGGACTGAAATGAAGAGAGTTGGCTTGAAAAAGGAAGCGGGGTGGAGTTTTGTAGATGTAGGAGGGGTCGAAGGTTTTAAGTTTGTGGCAGCAGATACAAGGCACGGCGACTCTGAGCAAATATATGCAGTATTGCGCAGTATGAACAAACACATGGCAGATGTAGCTGGTGATGTACATCAATCGAGTCTAGTGAGTGTAATTAGTTGATGTCTCAATATACTCATATACACTGATTCTCTCTTTTAATTTAGTAATTTACTAATGTGTG
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| CDS seq | ATGCGCCGCTCACCTCCGCGCTCCACGCTGCCCTCCTCAAGTCCGGCGCGCTCGACCGTACCCAGCCTCTCACCGCGTCGAACTCTCTCCTGCACTGTTTCAGGATCCTTGAAGTATGGAAAGGGAATCCATGCGCACTTGATTAAAATGAATGATTTGCCAAGCATTAGCATCGAAAACTCCCTGATGGGCATGTATGCTAGATTTGAGCAAGTTGATGCAGCATATGTGGTGTTCAAAGGTATGCAAATTAAGGATATTGTTTCGTGGAACACCATGATCTCATGCCTGGCAAAGAGTGATCATGTGGATGAAGCCTTGGAGCTTTTTAGTATTCTTCATGGTGGTGATGGACTTGTGCCTGACTTTGTCACTGTCTTGAGCGTAGTGCAGGCATGTTCTAATGCTGGATTACTGCAGCAAGGGCAGATGCTCCATGGATACATTATAAAGTCTGGATCTTTGTATGATGTCTCAATCTGCAATGCCCTGATAAGTATGTATGCTAAGTTGGGAAGAATTGATTTCTCTGAGCAGATATTTGAGCAGATGGATATTAAGGACATTGTTTCGTGGAACTCAATGATCAATGCTTATGGTATTCATGGAGATGGGCTATCATCTCTAAGGATTTTTAATGAGCTGCAGGATGATGGAACATGTTCACCCAATGCTATCACATTTGTGAGTCTGATATCGGCTTGCAGTCATTCTGGTTTGGTTTCAGAAGGCTACAGATGCTTTCAAAGCATGAAAAACGACTACAGAATTGAGCCTAGCATGGATCATTATGCTTCTGTAGTTGATCTACTTGGAAGATCTGGGAGGTTTGCTGAGGCAGAACAATTTATCAGAAACATGCCTGTTCATCCCAATTCATCCATTTGGGGACCTCTTCTGGCTGCTTGCTCTCTTTACGGGAACATTGATCTTGCAGAAAAAGCTGCTATAGAATTGTCAATCTTGGAACCGGAGAGTGACATATGGAGAGTCTCCTTGTCAAATGTCTATGCCGTTGTTGGGAGATGGAAGGACTCTGCAAAGATTAGGACTGAAATGAAGAGAGTTGGCTTGAAAAAGGAAGCGGGGTGGAGTTTTGTAGATGTAGGAGGGGTCGAAGGTTTTAAGTTTGTGGCAGCAGATACAAGGCACGGCGACTCTGAGCAAATATATGCAGTATTGCGCAGTATGAACAAACACATGGCAGATGTAGCTGGTGATGTACATCAATCGAGTCTAGTGAGTGTAATTAGTTGA
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| Protein seq | MRRSPPRSTLPSSSPARSTVPSLSPRRTLSCTVSGSLKYGKGIHAHLIKMNDLPSISIENSLMGMYARFEQVDAAYVVFKGMQIKDIVSWNTMISCLAKSDHVDEALELFSILHGGDGLVPDFVTVLSVVQACSNAGLLQQGQMLHGYIIKSGSLYDVSICNALISMYAKLGRIDFSEQIFEQMDIKDIVSWNSMINAYGIHGDGLSSLRIFNELQDDGTCSPNAITFVSLISACSHSGLVSEGYRCFQSMKNDYRIEPSMDHYASVVDLLGRSGRFAEAEQFIRNMPVHPNSSIWGPLLAACSLYGNIDLAEKAAIELSILEPESDIWRVSLSNVYAVVGRWKDSAKIRTEMKRVGLKKEAGWSFVDVGGVEGFKFVAADTRHGDSEQIYAVLRSMNKHMADVAGDVHQSSLVSVIS |
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| Function | Pentatricopeptide repeat-containing protein At3g46790, chloroplastic [UniProtKB/Swiss-Prot:Q9STF3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0680500 | Os02t0680500-01 | Chr02 | 27770811 | 27773155 | + | irgsp1_rep | ||
| CDS seq | ATGCGCCGCTCACCTCCGCGCTCCACGCTGCCCTCCTCAAGTCCGGCGCGCTCGACCGTACCCAGCCTCTCACCGCGTCGAACTCTCTCCTGCACTGTTTCAGGATCCTTGAAGTATGGAAAGGGAATCCATGCGCACTTGATTAAAATGAATGATTTGCCAAGCATTAGCATCGAAAACTCCCTGATGGGCATGTATGCTAGATTTGAGCAAGTTGATGCAGCATATGTGGTGTTCAAAGGTATGCAAATTAAGGATATTGTTTCGTGGAACACCATGATCTCATGCCTGGCAAAGAGTGATCATGTGGATGAAGCCTTGGAGCTTTTTAGTATTCTTCATGGTGGTGATGGACTTGTGCCTGACTTTGTCACTGTCTTGAGCGTAGTGCAGGCATGTTCTAATGCTGGATTACTGCAGCAAGGGCAGATGCTCCATGGATACATTATAAAGTCTGGATCTTTGTATGATGTCTCAATCTGCAATGCCCTGATAAGTATGTATGCTAAGTTGGGAAGAATTGATTTCTCTGAGCAGATATTTGAGCAGATGGATATTAAGGACATTGTTTCGTGGAACTCAATGATCAATGCTTATGGTATTCATGGAGATGGGCTATCATCTCTAAGGATTTTTAATGAGCTGCAGGATGATGGAACATGTTCACCCAATGCTATCACATTTGTGAGTCTGATATCGGCTTGCAGTCATTCTGGTTTGGTTTCAGAAGGCTACAGATGCTTTCAAAGCATGAAAAACGACTACAGAATTGAGCCTAGCATGGATCATTATGCTTCTGTAGTTGATCTACTTGGAAGATCTGGGAGGTTTGCTGAGGCAGAACAATTTATCAGAAACATGCCTGTTCATCCCAATTCATCCATTTGGGGACCTCTTCTGGCTGCTTGCTCTCTTTACGGGAACATTGATCTTGCAGAAAAAGCTGCTATAGAATTGTCAATCTTGGAACCGGAGAGTGACATATGGAGAGTCTCCTTGTCAAATGTCTATGCCGTTGTTGGGAGATGGAAGGACTCTGCAAAGATTAGGACTGAAATGAAGAGAGTTGGCTTGAAAAAGGAAGCGGGGTGGAGTTTTGTAGATGTAGGAGGGGTCGAAGGTTTTAAGTTTGTGGCAGCAGATACAAGGCACGGCGACTCTGAGCAAATATATGCAGTATTGCGCAGTATGAACAAACACATGGCAGATGTAGCTGGTGATGTACATCAATCGAGTCTAGTGAGTGTAATTAGTTGA
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| Protein seq | MRRSPPRSTLPSSSPARSTVPSLSPRRTLSCTVSGSLKYGKGIHAHLIKMNDLPSISIENSLMGMYARFEQVDAAYVVFKGMQIKDIVSWNTMISCLAKSDHVDEALELFSILHGGDGLVPDFVTVLSVVQACSNAGLLQQGQMLHGYIIKSGSLYDVSICNALISMYAKLGRIDFSEQIFEQMDIKDIVSWNSMINAYGIHGDGLSSLRIFNELQDDGTCSPNAITFVSLISACSHSGLVSEGYRCFQSMKNDYRIEPSMDHYASVVDLLGRSGRFAEAEQFIRNMPVHPNSSIWGPLLAACSLYGNIDLAEKAAIELSILEPESDIWRVSLSNVYAVVGRWKDSAKIRTEMKRVGLKKEAGWSFVDVGGVEGFKFVAADTRHGDSEQIYAVLRSMNKHMADVAGDVHQSSLVSVIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0680500 | RBH | 0.422135 | 0.280088 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g34700 | SBH | 0.362603 | 0.364141 | 0.174454 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0584700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029060 | RBH | 0.686957 | 30.750662 | 9.775066 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029120 | SBH | 0.433864 | 2.836729 | 5.174692 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0028990 | RBH | 0.885666 | 7.636452 | 7.597212 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028580 | RBH | 0.239662 | 1.107810 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028730 | RBH | 12.494941 | 34.484997 | 31.448877 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0450700 | RBH | 2.6818425 | 2.1906975 | 0.996698 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028540 | SBH | 0.626989 | 2.600356 | 2.295708 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0478500 | RBH | 4.0605285 | 5.1707135 | 10.3051105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028880 | RBH | 0.558859 | 0.905310 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028590 | RBH | 0.646225 | 16.252895 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0028880 | RBH | 3.295800 | 10.661794 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028750 | SBH | 1.337219 | 2.212445 | 2.850234 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028420 | RBH | 0.631352 | 25.442520 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029010 | RBH | 0.990269 | 12.455846 | 4.824191 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028780 | RBH | 1.215729 | 28.215883 | 13.531713 |
