Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0248200 | OGI:02013220 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:8380541-8384118 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACACCGGCGGCAACGTGTCAGCCGGTAGCTGCTGCGCCGCCGCCGCGGCGGTGGCCGTCGACGTGGCTGTGGCTTTCACCACGATGGTCGCCGGCGGCGAGACGTTGCACCGGCAGAGCGGGCACGTGGAGTGCGAGTGCAGCCACATGTCGATGCAGCCCACGTGGAACAGGTGCCTGCACGCCGGCAGCTGCCGCACCATCTCGCCGGCCTGGACGTCCTCCAGGCACACCGAGCACAGCGCGCACCTCCCCGACTTGCTTCCGCCGCCGCCGCCGTCGTCGGCCGCAGGGCGCGCGTACGCGAACGCCGGGAGCGCGTCGATCGCCGCGCCGACGAGCCCGCACGTCGCGCACGCCGCCGCCGCGGGCGCCCTCGCCCGCGCCTCCTCCGCCGCCGCTGCTGTCGTCGGCAGCGCCGCCGGAGCCCCGCCGGCATCCCCGCACCACCGCGAGACGCAGCCGACGGCGCAGAACAGCACCGCGGCCGCCGCGGCGAACACGCACGCCTTGGCGATGCTCACCGTGGCGGCGAGCACCGACAGCAGCAGCAGCGACGCGCAGACCATGACGACGGAGTAGCACGCGAGGTACCCACCATCCCCGCCGCGCTGGCTCGCCGCCGGGCGCCGTTCGCCGTTAAACATCTGCAGCCTTCAGCTGAATCACGAGCTCTGAGCAGTGAGCGCGTAGTACGCCATGGAGCGGGCGCTCTCGGTGGCAAGAAATACCCGGTCGTGGCGCGCCGGGTGCGCGCTCTCGGCGTCGGCGTCGGCCCCGCGGCGCGGCCGGTTTTAAGGTTTCTGGCCCGAGGTATTCGCGGCTGATGGGCCGCAGATTTGGTCGGCGGCGTTAAGGAATCGTGGTTTAGATTCTTGGCTGATCGCCTAATCGAGGGATAATGATAGTTTGGGAGGTGATCATTGATGACACGTAGGAAGGCCACTACTTGTGGTAGCCACTAGAGTCCACATACAGGTCCAACACGACAGGTCCATTGGTCGTTGAGATATTTTCCCCAATAGGCTATCAGCAAAATTGCATAATCCACCTAGAAAATCACTTTCGTTTTAAGATTTTGTCCAATAACCCATTTTTTTGTTACTGAAGCTCACCATCCAACACATGTAAGTAGCTGATTTAGGCCCATTTTATTCTGATGTGGATTCACAACGGATCATATCAGACACGTCTGGCTCATCCAGCGTGGCTATGATGTGAGTCTCACTCAAGCTCGTTCTCAGGCTAGCTTGGTGGGAAGACGTGGGTTGAACGCTGAGCTGATCGAACGGCGGTGATTGGCGGCAAATCCACATTGGAATAAATGACATGAATCAACTAACTACTATGTGCATGAAAGGGGCTAATTTCGCCTCGACAGTGTTGGATAGGTAGACTTTTAATCAAAATGAGTTACGCGGTGAAATCTTAAAACTAGAGTGATAATTAAAATGGTCTATGCAATTTTGTTAGGCTATTTAGCGAACGTCCGCCGGTTAGTCCCTTATAGCAGTGGACACGCTTCATGATGGTTAGGTTTTTTTTTTTTTTTTACTTTACAACGATTTTAGATAATTGTTGTCAAGATTTAAGAGTCCGTAGCTATATAATAAAAAAATAACAGTTAAAAGATAGAAATTCCAGCTTTTTAAAACTTTGTCACTAACTGCTCCTTGAAATTTCCAGCTCTCAAAAGACATAGATTTTGTTTCCACTGGAAACCAAATCATGATGAAGTGTTTTGTAACCTTGCATAACGAAGCTCTTTTCTGTTTTCCTTTTAGAAAGTTCGAGATTGTGGTGCCCGCTGGTTCTATGTAGATTACATCTTTGCGTGCTTGATCCTCTCACGTGCTCAATTTATGTAAAAGAATGACAACTAGTAAAATTGTTATTATTATAACATAGCACTATGACCATGCTACTAACCTTCGATTGACACATCAAAATGTAGCTTCTCTTGCTCTATTTTGTTGAATTATTAGGGTGTATAAACTAATAAAATGGTCAGTAGGTGTGTGCCTTTAGACTTCCCAGCAGGTTTACAAAACCGATCATAATCACGCAGTAATCACTATGTATGGTAACGGTAAAACCATAATAACCCTATCAAATTTAAATAAATTTATAAAATAATATAAATTGTTATAAATTTTGTATGATTACTCACGTTTTGCATGGTTACTGTATGGTAGCTGCACTAACCGTCAAGGTATGGTAAACTCGTGACAATAAGGGAAGCCTGCTTCATTGACATAGTGCTGAGGTCAACATATTTTAAGAAATTACTATGTTTATCAAGAAAAGTACTACATTTTCTTAAAAAAGTTTATCCATATATTTCCTTTGTAGTGTGATAACTTTGCTTGCTTGAGCTTCCCACGTGCTCAATTTAGGTAACATGAAAATTGTAAGTATTTATGTGGTTGAAATGAGACATATAAAAATTAACTAGTTGTTACACTCACCTTTGTGTGCTTAACAAATTGTCAAAATTACGCCGATAATAAATATATCCAACACTATCAAAATTTAATAATGTCAAAATGGGTTAAAACTTAACATTATCAAATTTTAATAGGGTTGGAAGTGGCTACCGAGTGAAGAAGCCCTTTGATTCACCTAGTGAACTACCTTAAAATGTACAGCACCAAACTACAAATACTCTGAAAAATATATACAACAATTTACTGAAAATAAATGAGAAAGAAAAGTAGTTTTTGTTCTTTTTTCTATCAATGATCACAGCTACAAGCTCCTATCCTGAATAGTCCTCTTGAGAATATACAGAAATCACACGACACAACCAATTTGGCCTGCAAATACGCATGACAATCAATTCCCCTGTTCTAACACTACAATGTACAATCCAAGATTCCTTCTTTCCTATCGAAAACGAAGGCGAAAGCTACACCGGCGGCAACGCATCGGGATCTGCATACGCCGACGTCGATTCGGCGGCTTGCGCCGGCGGCGGCGGGGCAGGTTTCGCCGCCGGTTTCCGCGGCAAGACCTCGCAGCGGCAGAGCGGGCAGGTGGTGTGCGAGTGCAGCCACATGTCGACGCAGTCCCTGTGGAAGAGGTGGCCGCACGCCGGCAGCCGCCGCACCGTCTCGCCGCGCGCCACGTCCTCCAGGCACACCGCGCACAGCACGCTGCCGCCGTGCTTGCTCCCGCCGCCTCCGCCGGCGCCGCCCTCCGCGGGGCCCTCGAACACGAACGCCGGCAGCGTGGCGATCAGCGCCGCGCCGACGAGCCGGCACGCGCACCGCGTCACCCCCGCGGCGCCCGCTCCCCGCCCCCCGCCCCCCGCGGCGGCGCCGGCGCGCGCGGGCGGGCCCCCCGCGCCGCACAGCGGCACGAACCACCCGATCACGCCGAACAGCAGCACGGCGAGCCCCGCCACGGCGCAGGCCTTGGTGACGCTGACCGACGCCGCGAGCACGCAGAACAGGAGCAGCGACACGCACGCCACGGAGACCCCGTAGCACGCCCGGCACTCGTAATCATCATCTCCCCCGCCGCTGCCACCGCCCACCCTCGCCGCCGAGCGCCGGGCCGCCGCGACACCGCTCAT
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| CDS seq | ATGAGCGGTGTCGCGGCGGCCCGGCGCTCGGCGGCGAGGGTGGGCGGTGGCAGCGGCGGGGGAGATGATGATTACGAGTGCCGGGCGTGCTACGGGGTCTCCGTGGCGTGCGTGTCGCTGCTCCTGTTCTGCGTGCTCGCGGCGTCGGTCAGCGTCACCAAGGCCTGCGCCGTGGCGGGGCTCGCCGTGCTGCTGTTCGGCGTGATCGGGTGGTTCGTGCCGCTGTGCGGCGCGGGGGGCCCGCCCGCGCGCGCCGGCGCCGCCGCGGGGGGCGGGGGGCGGGGAGCGGGCGCCGCGGGGGTGACGCGGTGCGCGTGCCGGCTCGTCGGCGCGGCGCTGATCGCCACGCTGCCGGCGTTCGTGTTCGAGGGCCCCGCGGAGGGCGGCGCCGGCGGAGGCGGCGGGAGCAAGCACGGCGGCAGCGTGCTGTGCGCGGTGTGCCTGGAGGACGTGGCGCGCGGCGAGACGGTGCGGCGGCTGCCGGCGTGCGGCCACCTCTTCCACAGGGACTGCGTCGACATGTGGCTGCACTCGCACACCACCTGCCCGCTCTGCCGCTGCGAGGTCTTGCCGCGGAAACCGGCGGCGAAACCTGCCCCGCCGCCGCCGGCGCAAGCCGCCGAATCGACCCAGCGCGGCGGGGATGGTGGGTACCTCGCGTGCTACTCCGTCGTCATGGTCTGCGCGTCGCTGCTGCTGCTGTCGGTGCTCGCCGCCACGGTGAGCATCGCCAAGGCGTGCGTGTTCGCCGCGGCGGCCGCGGTGCTGTTCTGCGCCGTCGGCTGCGTCTCGCGGTGGTGCGGGGATGCCGGCGGGGCTCCGGCGGCGCTGCCGACGACAGCAGCGGCGGCGGAGGAGGCGCGGGCGAGGGCGCCCGCGGCGGCGGCGTGCGCGACGTGCGGGCTCGTCGGCGCGGCGATCGACGCGCTCCCGGCGTTCGCGTACGCGCGCCCTGCGGCCGACGACGGCGGCGGCGGCGGAAGCAAGTCGGGGAGGTGCGCGCTGTGCTCGGTGTGCCTGGAGGACGTCCAGGCCGGCGAGATGGTGCGGCAGCTGCCGGCGTGCAGGCACCTGTTCCACGTGGGCTGCATCGACATGTGGCTGCACTCGCACTCCACGTGCCCGCTCTGCCGGTGCAACGTCTCGCCGCCGGCGACCATCGTGGTGAAAGCCACAGCCACGTCGACGGCCACCGCCGCGGCGGCGGCGCAGCAGCTACCGGCTGACACGTTGCCGCCGGTGTGA
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| Protein seq | MSGVAAARRSAARVGGGSGGGDDDYECRACYGVSVACVSLLLFCVLAASVSVTKACAVAGLAVLLFGVIGWFVPLCGAGGPPARAGAAAGGGGRGAGAAGVTRCACRLVGAALIATLPAFVFEGPAEGGAGGGGGSKHGGSVLCAVCLEDVARGETVRRLPACGHLFHRDCVDMWLHSHTTCPLCRCEVLPRKPAAKPAPPPPAQAAESTQRGGDGGYLACYSVVMVCASLLLLSVLAATVSIAKACVFAAAAAVLFCAVGCVSRWCGDAGGAPAALPTTAAAAEEARARAPAAAACATCGLVGAAIDALPAFAYARPAADDGGGGGSKSGRCALCSVCLEDVQAGEMVRQLPACRHLFHVGCIDMWLHSHSTCPLCRCNVSPPATIVVKATATSTATAAAAAQQLPADTLPPV |
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| Function | RING-H2 finger protein ATL32 [UniProtKB/Swiss-Prot:Q8W571] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0248200 | Os02t0248200-00 | Chr02 | 8380541 | 8384118 | - | irgsp1_rep | ||
| CDS seq | ATGAGCGGTGTCGCGGCGGCCCGGCGCTCGGCGGCGAGGGTGGGCGGTGGCAGCGGCGGGGGAGATGATGATTACGAGTGCCGGGCGTGCTACGGGGTCTCCGTGGCGTGCGTGTCGCTGCTCCTGTTCTGCGTGCTCGCGGCGTCGGTCAGCGTCACCAAGGCCTGCGCCGTGGCGGGGCTCGCCGTGCTGCTGTTCGGCGTGATCGGGTGGTTCGTGCCGCTGTGCGGCGCGGGGGGCCCGCCCGCGCGCGCCGGCGCCGCCGCGGGGGGCGGGGGGCGGGGAGCGGGCGCCGCGGGGGTGACGCGGTGCGCGTGCCGGCTCGTCGGCGCGGCGCTGATCGCCACGCTGCCGGCGTTCGTGTTCGAGGGCCCCGCGGAGGGCGGCGCCGGCGGAGGCGGCGGGAGCAAGCACGGCGGCAGCGTGCTGTGCGCGGTGTGCCTGGAGGACGTGGCGCGCGGCGAGACGGTGCGGCGGCTGCCGGCGTGCGGCCACCTCTTCCACAGGGACTGCGTCGACATGTGGCTGCACTCGCACACCACCTGCCCGCTCTGCCGCTGCGAGGTCTTGCCGCGGAAACCGGCGGCGAAACCTGCCCCGCCGCCGCCGGCGCAAGCCGCCGAATCGACCCAGCGCGGCGGGGATGGTGGGTACCTCGCGTGCTACTCCGTCGTCATGGTCTGCGCGTCGCTGCTGCTGCTGTCGGTGCTCGCCGCCACGGTGAGCATCGCCAAGGCGTGCGTGTTCGCCGCGGCGGCCGCGGTGCTGTTCTGCGCCGTCGGCTGCGTCTCGCGGTGGTGCGGGGATGCCGGCGGGGCTCCGGCGGCGCTGCCGACGACAGCAGCGGCGGCGGAGGAGGCGCGGGCGAGGGCGCCCGCGGCGGCGGCGTGCGCGACGTGCGGGCTCGTCGGCGCGGCGATCGACGCGCTCCCGGCGTTCGCGTACGCGCGCCCTGCGGCCGACGACGGCGGCGGCGGCGGAAGCAAGTCGGGGAGGTGCGCGCTGTGCTCGGTGTGCCTGGAGGACGTCCAGGCCGGCGAGATGGTGCGGCAGCTGCCGGCGTGCAGGCACCTGTTCCACGTGGGCTGCATCGACATGTGGCTGCACTCGCACTCCACGTGCCCGCTCTGCCGGTGCAACGTCTCGCCGCCGGCGACCATCGTGGTGAAAGCCACAGCCACGTCGACGGCCACCGCCGCGGCGGCGGCGCAGCAGCTACCGGCTGACACGTTGCCGCCGGTGTGA
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| Protein seq | MSGVAAARRSAARVGGGSGGGDDDYECRACYGVSVACVSLLLFCVLAASVSVTKACAVAGLAVLLFGVIGWFVPLCGAGGPPARAGAAAGGGGRGAGAAGVTRCACRLVGAALIATLPAFVFEGPAEGGAGGGGGSKHGGSVLCAVCLEDVARGETVRRLPACGHLFHRDCVDMWLHSHTTCPLCRCEVLPRKPAAKPAPPPPAQAAESTQRGGDGGYLACYSVVMVCASLLLLSVLAATVSIAKACVFAAAAAVLFCAVGCVSRWCGDAGGAPAALPTTAAAAEEARARAPAAAACATCGLVGAAIDALPAFAYARPAADDGGGGGSKSGRCALCSVCLEDVQAGEMVRQLPACRHLFHVGCIDMWLHSHSTCPLCRCNVSPPATIVVKATATSTATAAAAAQQLPADTLPPV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0248200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g15020 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0534900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010660 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010760 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010620 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010440 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010570 | SBH | 0.263175 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0138200 | RBH | 0.0121965 | 0.2351895 | 0.050323 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010330 | RBH | 0.026031 | 0.200497 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0145700 | RBH | 0.084576 | 1.0488735 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010860 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010480 | SBH | 0.0 | 0.973875 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010830 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010500 | SBH | 0.149334 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010750 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010540 | RBH | 0.0 | 0.0 | 0.0 |
