Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
Os02g0174400		OGI:02012550 \| 16/16			Nipponbare \| IRGSP 1.0 \| RAP-db			Chr02:4086325-4089165		Homologues MicroCollinearity RGI-JBrowse RAP-DB Ricevarmap2
Gene Symbol		-
DNA seq		CCATGCACATGCAAAAGCATAGCCACCCACTGCCTTCTCCCCCCACCCCGCGTCGCGCCACGGTCACCGTCGCCGGCCACCGCCCCGCCCCGCCGAGCCGAGCCGAAGCGCCATGGCGCGGCCTCGGCCGCCCGGCCTCATCGCCGTCGCTGCCGCCGCCGCCCTCGTCGCCTGGTGTCTTTGCGGGCCTGCCTCCGCCGCCGCCGCCGCCGGTGGCGAGGCGGGCGGCGGCGGCGCGGGGCCCGAGGGCGACGTGCTGATCGCGTTCCGGGAGACGCTGCGGGGGCCGGACGGCGCGCCGCCGGGGCCGCTGCGAGCGTGGGGCACGCCGGCGGTGCCGTGCCGCGGCAAGGCGTCGCAGTGGTTCGGCGTGTCGTGCCACGGGAACGGCAGCGTGCAGGGGCTGCAGCTGGAGCGGCTGGGCTTGTCGGGCGCGGCGCCCGACCTGGGCCTGCTCGCCGCGCTCCCGGGGCTCCGCGTGCTCAGCCTCGCCAACAACGCCATCGCCGGCGCGTTCCCCAACGTGTCGGCGCTCGCCATGCTCAAGATGCTCTACCTCTCCCGCAACCGCTTCTCCGGCGTCGTCCCCGACGGCACCTTCCACACCATGCGCGGCCTCCGCAAGCTCCACCTCTCCTCCAACGAGCTCTCCGGCCCGATCCCCAGCTCCATCACCTCGCCGCGGCTGCTCGAGCTGTCGCTCGCGCACAACCAGTTCAACGGGCCATTGCCGGACTTCTCCCAGCCGGAGCTCCGCTACGTCGACGTCTCCAGCAACAACCTCTCCGGCCCTATCCCCGAAGGCCTCAGCCGCTTCAACGCCAGCATGTTCTCAGGTACGCAGATCTCGATCGATCACGACGTCTTCTTCTTCCTCCTCCGATTCACGCCATTGATCGATTCTTGATCTTGGATTTGGATTTGGGTTTGATCAGGTAACGAGTATCTCTGCGGCAAGCCGCTCGACACGCCCTGCGACAAGCTCGCCTCGCCGTCGAACATGTCGACGTTCATGACCATCGCCGTTGTGCTCATCGTCGTCGGCGTGATCCTCGCCGCGGCGGGGATCGCGACGGGGGTCATCGGCCGCAGGAGGCGGAAGCGGCGGCGGCGACGCCCCGGGCCCGGCGAGCCCGGCGGCGACCAGACGCCCTCCAACCCGAAGCTCCACACCGCGCCGGCCGTGAACATCAACCGTGGATCCGCCACCGCCGCCGCCTCCACAGCCGCCGCAGCTGGAACGTCGGCCTCTGGCGGCGGCGGCGGCGCGGCGGCGAAGCGAGGGGGGAGACGGGACGAGCACGGGCGGCTGGTGTTCGTCCAGGAGAGCCGGAAGCGGTTCGAGATCGAGGACCTGCTGCGTGCGTCGGCGGAGGTGCTCGGCAGCGGCAACTTCGGGTCGTCGTACAAGGCGACGCTCCAGGAGCGCCCCGCCGTGGTGGTGAAGCGGTTCAAGGACATGAACGGCGTCGGGCGCGAGGACTTCTCCGAACACATGCGCCGCCTAGGCCGCCTCTCCCACCCCAACCTCCTCCCCGTCGTCGCCTACCTCTACAAGAAAGACGAGAAGCTCCTCATCACCGACTACATCACCAATGGCAGCCTCGCCCATTTCCTCCACGGTAACCAACCATTCATTCCTCAATCTCGCAACACCATTTCGTCTTACCGACAACGTTCAATTCCAAGAAATATCATCGATAAGTGCAAGTTACATAAAATACTACTCTCTCCGTTTCAGGTTACAAGACGTTTTGACTTTGGTCAAAATCAAACTATTTTAAGTTTGACTAAGTTTATAGACAAATATAGTATAATATTTATAATATTAAATTAGTGTCATCAAATCAATAATTGAATATATTTTCATAATAAATTTGTTTTGGGTTAAAAATGCTACTACTTTTTTCTATAAACTTAATCAAACTTAAAGCACATCTTGTAACCTGAAATGGAGAGTATCGTACATGCGACTTTGTTCCAGAAAAATCATCGTTGTAAGGGTTTTGTTCATCCCGCACCGTTGAATGCACCGTTTATCATAACTAGTGATAATAGTATTTCTGGAACAAAATAGCTTGTACGATCGATAGCATTTCTTATAATTGAACGCTTGTCTTGGATTTTTTTCTCTTTTTTGGCATAATGAATTGAGGTGAGATTTTTGTAACAGGGAATCGGGGATCGGAGTTGGATTGGGGGAAGAGGCTGAGGATAATCAGGGGGACGGCGAGGGGGTTGGGGCACCTGTACGACGAGCTGCCGATGCTGACGGTGCCGCACGGCCACCTCAAGTCGTCGAACGTGCTGCTCGACGGCGACATGGAGGCGGTGCTGTCGGACTACGCGCTGGTGCCGGTGGTCACGGCGAGCGCGGCGGCGCAGGTGATGGTGGCGTACAAGGCGCCGGAGTGCGTCGCGGCGGCGGCGGCCGGCAAGCCGTCGAAGAAGAGCGACGTGTGGAGCCTCGGGATCCTCATCCTCGAGGTGCTCACCGGCAAGTTCCCGGCGAACTACCTCCGCCAGGGGCGGCAGGACAACGCCGACCTCGCCGGCTGGGTCAGCTCCGTCGTCAGCGAGGAGCGCACCGGCGAGGTGTTCGACAAGGACATGGCCGCCGCCGGCGCCGGCGCCGAGGACGACATGCTCAAGCTGCTCCACGTCGGCCTCGGCTGCTGCGACGCCGACGTCGACCAGAGGTGGGAGCTCAAGACGGCGATCGCGCGCATCGAGGAGATCAGGGTTCCGGACCCCACCCCCACCCCCGCCGCCGCCGCTGACGCCGCCGAGCCCTCGCCGTCGACGACGACGACGACGAACTCCGGCGAGACCCGGTCGTAA More
CDS seq		CCATGCACATGCAAAAGCATAGCCACCCACTGCCTTCTCCCCCCACCCCGCGTCGCGCCACGGTCACCGTCGCCGGCCACCGCCCCGCCCCGCCGAGCCGAGCCGAAGCGCCATGGCGCGGCCTCGGCCGCCCGGCCTCATCGCCGTCGCTGCCGCCGCCGCCCTCGTCGCCTGGTGTCTTTGCGGGCCTGCCTCCGCCGCCGCCGCCGCCGGTGGCGAGGCGGGCGGCGGCGGCGCGGGGCCCGAGGGCGACGTGCTGATCGCGTTCCGGGAGACGCTGCGGGGGCCGGACGGCGCGCCGCCGGGGCCGCTGCGAGCGTGGGGCACGCCGGCGGTGCCGTGCCGCGGCAAGGCGTCGCAGTGGTTCGGCGTGTCGTGCCACGGGAACGGCAGCGTGCAGGGGCTGCAGCTGGAGCGGCTGGGCTTGTCGGGCGCGGCGCCCGACCTGGGCCTGCTCGCCGCGCTCCCGGGGCTCCGCGTGCTCAGCCTCGCCAACAACGCCATCGCCGGCGCGTTCCCCAACGTGTCGGCGCTCGCCATGCTCAAGATGCTCTACCTCTCCCGCAACCGCTTCTCCGGCGTCGTCCCCGACGGCACCTTCCACACCATGCGCGGCCTCCGCAAGCTCCACCTCTCCTCCAACGAGCTCTCCGGCCCGATCCCCAGCTCCATCACCTCGCCGCGGCTGCTCGAGCTGTCGCTCGCGCACAACCAGTTCAACGGGCCATTGCCGGACTTCTCCCAGCCGGAGCTCCGCTACGTCGACGTCTCCAGCAACAACCTCTCCGGCCCTATCCCCGAAGGCCTCAGCCGCTTCAACGCCAGCATGTTCTCAGGTACGCAGATCTCGATCGATCACGACGTAACGAGTATCTCTGCGGCAAGCCGCTCGACACGCCCTGCGACAAGCTCGCCTCGCCGTCGAACATGTCGACGTTCATGACCATCGCCGTTGTGCTCATCGTCGTCGGCGTGATCCTCGCCGCGGCGGGGATCGCGACGGGGGTCATCGGCCGCAGGAGGCGGAAGCGGCGGCGGCGACGCCCCGGGCCCGGCGAGCCCGGCGGCGACCAGACGCCCTCCAACCCGAAGCTCCACACCGCGCCGGCCGTGAACATCAACCGTGGATCCGCCACCGCCGCCGCCTCCACAGCCGCCGCAGCTGGAACGTCGGCCTCTGGCGGCGGCGGCGGCGCGGCGGCGAAGCGAGGGGGGAGACGGGACGAGCACGGGCGGCTGGTGTTCGTCCAGGAGAGCCGGAAGCGGTTCGAGATCGAGGACCTGCTGCGTGCGTCGGCGGAGGTGCTCGGCAGCGGCAACTTCGGGTCGTCGTACAAGGCGACGCTCCAGGAGCGCCCCGCCGTGGTGGTGAAGCGGTTCAAGGACATGAACGGCGTCGGGCGCGAGGACTTCTCCGAACACATGCGCCGCCTAGGCCGCCTCTCCCACCCCAACCTCCTCCCCGTCGTCGCCTACCTCTACAAGAAAGACGAGAAGCTCCTCATCACCGACTACATCACCAATGGCAGCCTCGCCCATTTCCTCCACGGTAACCAACCATTCATTCCTCAATCTCGCAACACCATTTCGTCTTACCGACAACGTTCAATTCCAAGAAATATCATCGATAAGATAATCAGGGGGACGGCGAGGGGGTTGGGGCACCTGTACGACGAGCTGCCGATGCTGACGGTGCCGCACGGCCACCTCAAGTCGTCGAACGTGCTGCTCGACGGCGACATGGAGGCGGTGCTGTCGGACTACGCGCTGGTGCCGGTGGTCACGGCGAGCGCGGCGGCGCAGGTGATGGTGGCGTACAAGGCGCCGGAGTGCGTCGCGGCGGCGGCGGCCGGCAAGCCGTCGAAGAAGAGCGACGTGTGGAGCCTCGGGATCCTCATCCTCGAGGTGCTCACCGGCAAGTTCCCGGCGAACTACCTCCGCCAGGGGCGGCAGGACAACGCCGACCTCGCCGGCTGGGTCAGCTCCGTCGTCAGCGAGGAGCGCACCGGCGAGGTGTTCGACAAGGACATGGCCGCCGCCGGCGCCGGCGCCGAGGACGACATGCTCAAGCTGCTCCACGTCGGCCTCGGCTGCTGCGACGCCGACGTCGACCAGAGGTGGGAGCTCAAGACGGCGATCGCGCGCATCGAGGAGATCAGGGTTCCGGACCCCACCCCCACCCCCGCCGCCGCCGCTGACGCCGCCGAGCCCTCGCCGTCGACGACGACGACGACGAACTCCGGCGAGACCCGGTCGTAA More
Protein seq		PCTCKSIATHCLLPPPRVAPRSPSPATAPPRRAEPKRHGAASAARPHRRRCRRRPRRLVSLRACLRRRRRRWRGGRRRRGARGRRADRVPGDAAGAGRRAAGAAASVGHAGGAVPRQGVAVVRRVVPRERQRAGAAAGAAGLVGRGARPGPARRAPGAPRAQPRQQRHRRRVPQRVGARHAQDALPLPQPLLRRRPRRHLPHHARPPQAPPLLQRALRPDPQLHHLAAAARAVARAQPVQRAIAGLLPAGAPLRRRLQQQPLRPYPRRPQPLQRQHVLRYADLDRSRRNEYLCGKPLDTPCDKLASPSNMSTFMTIAVVLIVVGVILAAAGIATGVIGRRRRKRRRRRPGPGEPGGDQTPSNPKLHTAPAVNINRGSATAAASTAAAAGTSASGGGGGAAAKRGGRRDEHGRLVFVQESRKRFEIEDLLRASAEVLGSGNFGSSYKATLQERPAVVVKRFKDMNGVGREDFSEHMRRLGRLSHPNLLPVVAYLYKKDEKLLITDYITNGSLAHFLHGNQPFIPQSRNTISSYRQRSIPRNIIDKIIRGTARGLGHLYDELPMLTVPHGHLKSSNVLLDGDMEAVLSDYALVPVVTASAAAQVMVAYKAPECVAAAAAGKPSKKSDVWSLGILILEVLTGKFPANYLRQGRQDNADLAGWVSSVVSEERTGEVFDKDMAAAGAGAEDDMLKLLHVGLGCCDADVDQRWELKTAIARIEEIRVPDPTPTPAAAADAAEPSPSTTTTTNSGETRS
Function		Probable LRR receptor-like serine/threonine-protein kinase At4g31250 [UniProtKB/Swiss-Prot:C0LGR9]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
Os02g0174400	Os02t0174400-00	Chr02	4086325	4089165	+	irgsp1_rep
CDS seq	CCATGCACATGCAAAAGCATAGCCACCCACTGCCTTCTCCCCCCACCCCGCGTCGCGCCACGGTCACCGTCGCCGGCCACCGCCCCGCCCCGCCGAGCCGAGCCGAAGCGCCATGGCGCGGCCTCGGCCGCCCGGCCTCATCGCCGTCGCTGCCGCCGCCGCCCTCGTCGCCTGGTGTCTTTGCGGGCCTGCCTCCGCCGCCGCCGCCGCCGGTGGCGAGGCGGGCGGCGGCGGCGCGGGGCCCGAGGGCGACGTGCTGATCGCGTTCCGGGAGACGCTGCGGGGGCCGGACGGCGCGCCGCCGGGGCCGCTGCGAGCGTGGGGCACGCCGGCGGTGCCGTGCCGCGGCAAGGCGTCGCAGTGGTTCGGCGTGTCGTGCCACGGGAACGGCAGCGTGCAGGGGCTGCAGCTGGAGCGGCTGGGCTTGTCGGGCGCGGCGCCCGACCTGGGCCTGCTCGCCGCGCTCCCGGGGCTCCGCGTGCTCAGCCTCGCCAACAACGCCATCGCCGGCGCGTTCCCCAACGTGTCGGCGCTCGCCATGCTCAAGATGCTCTACCTCTCCCGCAACCGCTTCTCCGGCGTCGTCCCCGACGGCACCTTCCACACCATGCGCGGCCTCCGCAAGCTCCACCTCTCCTCCAACGAGCTCTCCGGCCCGATCCCCAGCTCCATCACCTCGCCGCGGCTGCTCGAGCTGTCGCTCGCGCACAACCAGTTCAACGGGCCATTGCCGGACTTCTCCCAGCCGGAGCTCCGCTACGTCGACGTCTCCAGCAACAACCTCTCCGGCCCTATCCCCGAAGGCCTCAGCCGCTTCAACGCCAGCATGTTCTCAGGTACGCAGATCTCGATCGATCACGACGTAACGAGTATCTCTGCGGCAAGCCGCTCGACACGCCCTGCGACAAGCTCGCCTCGCCGTCGAACATGTCGACGTTCATGACCATCGCCGTTGTGCTCATCGTCGTCGGCGTGATCCTCGCCGCGGCGGGGATCGCGACGGGGGTCATCGGCCGCAGGAGGCGGAAGCGGCGGCGGCGACGCCCCGGGCCCGGCGAGCCCGGCGGCGACCAGACGCCCTCCAACCCGAAGCTCCACACCGCGCCGGCCGTGAACATCAACCGTGGATCCGCCACCGCCGCCGCCTCCACAGCCGCCGCAGCTGGAACGTCGGCCTCTGGCGGCGGCGGCGGCGCGGCGGCGAAGCGAGGGGGGAGACGGGACGAGCACGGGCGGCTGGTGTTCGTCCAGGAGAGCCGGAAGCGGTTCGAGATCGAGGACCTGCTGCGTGCGTCGGCGGAGGTGCTCGGCAGCGGCAACTTCGGGTCGTCGTACAAGGCGACGCTCCAGGAGCGCCCCGCCGTGGTGGTGAAGCGGTTCAAGGACATGAACGGCGTCGGGCGCGAGGACTTCTCCGAACACATGCGCCGCCTAGGCCGCCTCTCCCACCCCAACCTCCTCCCCGTCGTCGCCTACCTCTACAAGAAAGACGAGAAGCTCCTCATCACCGACTACATCACCAATGGCAGCCTCGCCCATTTCCTCCACGGTAACCAACCATTCATTCCTCAATCTCGCAACACCATTTCGTCTTACCGACAACGTTCAATTCCAAGAAATATCATCGATAAGATAATCAGGGGGACGGCGAGGGGGTTGGGGCACCTGTACGACGAGCTGCCGATGCTGACGGTGCCGCACGGCCACCTCAAGTCGTCGAACGTGCTGCTCGACGGCGACATGGAGGCGGTGCTGTCGGACTACGCGCTGGTGCCGGTGGTCACGGCGAGCGCGGCGGCGCAGGTGATGGTGGCGTACAAGGCGCCGGAGTGCGTCGCGGCGGCGGCGGCCGGCAAGCCGTCGAAGAAGAGCGACGTGTGGAGCCTCGGGATCCTCATCCTCGAGGTGCTCACCGGCAAGTTCCCGGCGAACTACCTCCGCCAGGGGCGGCAGGACAACGCCGACCTCGCCGGCTGGGTCAGCTCCGTCGTCAGCGAGGAGCGCACCGGCGAGGTGTTCGACAAGGACATGGCCGCCGCCGGCGCCGGCGCCGAGGACGACATGCTCAAGCTGCTCCACGTCGGCCTCGGCTGCTGCGACGCCGACGTCGACCAGAGGTGGGAGCTCAAGACGGCGATCGCGCGCATCGAGGAGATCAGGGTTCCGGACCCCACCCCCACCCCCGCCGCCGCCGCTGACGCCGCCGAGCCCTCGCCGTCGACGACGACGACGACGAACTCCGGCGAGACCCGGTCGTAA More
Protein seq	PCTCKSIATHCLLPPPRVAPRSPSPATAPPRRAEPKRHGAASAARPHRRRCRRRPRRLVSLRACLRRRRRRWRGGRRRRGARGRRADRVPGDAAGAGRRAAGAAASVGHAGGAVPRQGVAVVRRVVPRERQRAGAAAGAAGLVGRGARPGPARRAPGAPRAQPRQQRHRRRVPQRVGARHAQDALPLPQPLLRRRPRRHLPHHARPPQAPPLLQRALRPDPQLHHLAAAARAVARAQPVQRAIAGLLPAGAPLRRRLQQQPLRPYPRRPQPLQRQHVLRYADLDRSRRNEYLCGKPLDTPCDKLASPSNMSTFMTIAVVLIVVGVILAAAGIATGVIGRRRRKRRRRRPGPGEPGGDQTPSNPKLHTAPAVNINRGSATAAASTAAAAGTSASGGGGGAAAKRGGRRDEHGRLVFVQESRKRFEIEDLLRASAEVLGSGNFGSSYKATLQERPAVVVKRFKDMNGVGREDFSEHMRRLGRLSHPNLLPVVAYLYKKDEKLLITDYITNGSLAHFLHGNQPFIPQSRNTISSYRQRSIPRNIIDKIIRGTARGLGHLYDELPMLTVPHGHLKSSNVLLDGDMEAVLSDYALVPVVTASAAAQVMVAYKAPECVAAAAAGKPSKKSDVWSLGILILEVLTGKFPANYLRQGRQDNADLAGWVSSVVSEERTGEVFDKDMAAAGAGAEDDMLKLLHVGLGCCDADVDQRWELKTAIARIEEIRVPDPTPTPAAAADAAEPSPSTTTTTNSGETRS More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	None	None	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0174400	RBH	0.091201	0.0	0.595187
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g07810	RBH	0.000000	0.0	0.147525
Nipponbare \| IRGSP 1.0 \| RAP-db	Os06g0663000	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0005750	RBH	0.0	0.0	0.308473
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0005860	RBH	0.0	0.0	0.717030
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0005670	RBH	0.0	0.0	0.334901
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0005600	RBH	0.000000	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0005630	RBH	0.0	0.0	0.000000
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_02G0069900	RBH	0.00672	0.1662065	0.181459
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0005600	RBH	0.0	0.0	0.209120
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0072100	RBH	0	0.0619535	0.083623
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0006010	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0005580	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0005890	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0005820	RBH	0.0	0.0	0.114342
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0005600	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G005760	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0005720	RBH	0.0	0.000000	0.000000

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.