Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0133300 | OGI:02006170 | 2/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:1754546-1756511 | ||||||||
| Gene Symbol | SMC3, sudA | ||||||||||
| DNA seq | AGGCTAGACAATAAATTCCCATTGGTAGTAAGCGGTAGGTTATAATGTATACAAGAATAAATAGCGATGTTACAACCACGTCGCCGATGCATGTACCACTGAATACATGTGCTATCCTAAACAGAACATAATGATAACACAATCTACCCATCAGCTGAAACTTACAAGTCCAAAGGCTAACTACATATTCACAACTAGTACAATTATCCAACCATGGAAATAGAACATCCAGGCAAAGCCAGATTTCAGCCTGCTTCCACTACCTCTACGTTAGCATCTGCCTGCAGCACACCACTGGCAAAAGCGCATTTAGTCTCAGCTAGCGTTGTGTGTCTGGTCATGCTCAATGAAGTCCAGAGCTTGCTCCTTTGACACCACATTGATGTAGCTAACCCTGTTCTTGTGCGTCACACCATAGATCTTATCAGCAACTTTTGCAATTTCTGGTCGGAATGTCGTTGCTATAAACTGAGTGTCAGCCATGTCAGCTAGACGGCGGATCATATCTGGAGCATTAGCTTAAGGAAAAACACATGCAAAAGCTTGTAGCATTCCAAAGATGATAACAAACAGATGGACATTATTTGATAGCACGCAAGAAAACGAGAGGGAGGGAACTCAGAAGAAATATAAAGGATACTGCCGACAGCTGTTCTGTACTGTGGATCCAGAGCAGCATCGATCTCATCAAACAGATAGAATGGGGCTGGATCACAACGCTGAATGGCAAAAATCAGTGTCAATGCCACCACTGTCTTCTGTCCACCAGACAACTGTTTCATAGACTGTGTTTCTCCCTTGCCAGTAAAGGAAACCTGAAACGTGAGTGTACCGCTTTTAGAAGCTTCGACAAAGATTATGCATAATATCAAGATCGGTATAATCCAAAATGAGTATAACAACTTAGTATCATTATTTATCATCGTCCGATTTTTCAAAGATCTATTGACATTTGCTCAATGAACAGTATATATGCACAAATACATAAAAAGCATATGCAAAAAGAGCATACCTTGACTTTTACACCAATGTACTTCTCAATTCTCCCTTCAGGATCTGGTTCACGAGGCCCATCCTCATCATTATCATCATCATCTGCATCACCATCCTATCAGGGAGGAAAGCATAAGCATTAATTTTCAGAAGAGATCTTACCTTCGAGACATCAATACATGGAAGGAAAATTCAGATAACTCCAGGCATATACATAGGTCATAAAATCGAAGTTCAAAATTCAAAAATGTGTCATCTTGAATTGGAAATCAAACTTAACATCATCTTTGCATTGAAGAATAGCCCAGGTATACAAAACAAAAGATACGATCTAATGCCAATTCATGGAAAGCAACATAGGTAACAGTAATAACTAATAGCAGCCTGTAGTCCCCAGCAAATTGGAGTACACTAGACATGAAACCCAATTCAACCAAGGTGATAGGCCAGCGTAGGAGAATTACAATTTTACCACAACCAAAGAGTACATACACACTGAATACCAGGGCTAAAAGGCAAAAAGTGTGTGCCATGGAAGCAAGGTCGGTAGGTAAAGCAAGGAAAATATTACCTTTTTCCTCATCATAACCAAATGTCCATGGCCACCTTGCACTAGTTCAGAGAACACTTCACGGAAGTGCCTTGCAACACCTTTAAATGTACGTTCGATTGATTCGTCCTTCCTTTGGTCTAAAACTGATATTAGTTCTCTGATTTTCTGCAATGTTATTCAGCAGGTTTTATGAGATTCTACTCATAGGATACAAGCGAAACTAAAGGCTTTTAACCAATGGAAAATTTCACCTGATCACCAGCATCAAGTTCAGCCCGTCTTCTCTGTAGTTGTTCACGTTGTTCGGTGAAGTTAACATACTGGTCAAGAGCTTTTTTGTTGACATGACTGAACTGCTGCAATTGCTCATTGCAGTCATAAAGCATCTTCTGCAGCTGCTTCTTATTTTTCCGCTTGTAC
More
|
||||||||||
| CDS seq | TACAAGCGGAAAAATAAGAAGCAGCTGCAGAAGATGCTTTATGACTGCAATGAGCAATTGCAGCAGTTCAGTCATGTCAACAAAAAAGCTCTTGACCAGTATGTTAACTTCACCGAACAACGTGAACAACTACAGAGAAGACGGGCTGAACTTGATGCTGGTGATCAGAAAATCAGAGAACTAATATCAGTTTTAGACCAAAGGAAGGACGAATCAATCGAACGTACATTTAAAGGTGTTGCAAGGCACTTCCGTGAAGTGTTCTCTGAACTAGTGCAAGGTGGCCATGGACATTTGGTTATGATGAGGAAAAAGGATGGTGATGCAGATGATGATGATAATGATGAGGATGGGCCTCGTGAACCAGATCCTGAAGGGAGAATTGAGAAGTACATTGGTGTAAAAGTCAAGGTTTCCTTTACTGGCAAGGGAGAAACACAGTCTATGAAACAGTTGTCTGGTGGACAGAAGACAGTGGTGGCATTGACACTGATTTTTGCCATTCAGCGTTGTGATCCAGCCCCATTCTATCTGTTTGATGAGATCGATGCTGCTCTGGATCCACAGTACAGAACAGCTGTCGGCAATATGATCCGCCGTCTAGCTGACATGGCTGACACTCAGTTTATAGCAACGACATTCCGACCAGAAATTGCAAAAGTTGCTGATAAGATCTATGGTGTGACGCACAAGAACAGGGTTAGCTACATCAATGTGGTGTCAAAGGAGCAAGCTCTGGACTTCATTGAGCATGACCAGACACACAACGCTAGCTGA
More
|
||||||||||
| Protein seq | YKRKNKKQLQKMLYDCNEQLQQFSHVNKKALDQYVNFTEQREQLQRRRAELDAGDQKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMRKKDGDADDDDNDEDGPREPDPEGRIEKYIGVKVKVSFTGKGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADMADTQFIATTFRPEIAKVADKIYGVTHKNRVSYINVVSKEQALDFIEHDQTHNAS |
||||||||||
| Function | Structural maintenance of chromosomes protein 3 [UniProtKB/Swiss-Prot:Q56YN8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0133300 | Os02t0133300-01 | Chr02 | 1754546 | 1756511 | - | irgsp1_rep | ||
| CDS seq | TACAAGCGGAAAAATAAGAAGCAGCTGCAGAAGATGCTTTATGACTGCAATGAGCAATTGCAGCAGTTCAGTCATGTCAACAAAAAAGCTCTTGACCAGTATGTTAACTTCACCGAACAACGTGAACAACTACAGAGAAGACGGGCTGAACTTGATGCTGGTGATCAGAAAATCAGAGAACTAATATCAGTTTTAGACCAAAGGAAGGACGAATCAATCGAACGTACATTTAAAGGTGTTGCAAGGCACTTCCGTGAAGTGTTCTCTGAACTAGTGCAAGGTGGCCATGGACATTTGGTTATGATGAGGAAAAAGGATGGTGATGCAGATGATGATGATAATGATGAGGATGGGCCTCGTGAACCAGATCCTGAAGGGAGAATTGAGAAGTACATTGGTGTAAAAGTCAAGGTTTCCTTTACTGGCAAGGGAGAAACACAGTCTATGAAACAGTTGTCTGGTGGACAGAAGACAGTGGTGGCATTGACACTGATTTTTGCCATTCAGCGTTGTGATCCAGCCCCATTCTATCTGTTTGATGAGATCGATGCTGCTCTGGATCCACAGTACAGAACAGCTGTCGGCAATATGATCCGCCGTCTAGCTGACATGGCTGACACTCAGTTTATAGCAACGACATTCCGACCAGAAATTGCAAAAGTTGCTGATAAGATCTATGGTGTGACGCACAAGAACAGGGTTAGCTACATCAATGTGGTGTCAAAGGAGCAAGCTCTGGACTTCATTGAGCATGACCAGACACACAACGCTAGCTGA
More
|
|||||||
| Protein seq | YKRKNKKQLQKMLYDCNEQLQQFSHVNKKALDQYVNFTEQREQLQRRRAELDAGDQKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMRKKDGDADDDDNDEDGPREPDPEGRIEKYIGVKVKVSFTGKGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADMADTQFIATTFRPEIAKVADKIYGVTHKNRVSYINVVSKEQALDFIEHDQTHNAS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0133300 | RBH | 5.971344 | 6.375368 | 25.943419 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g04040 | RBH | 3.588850 | 3.947417 | 4.898123 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0002630 | SBH | 3.070608 | 19.482769 | 25.104746 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0002710 | SBH | 0.836289 | 4.726335 | 9.587358 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0002650 | SBH | 7.866574 | 12.625457 | 32.548679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0002620 | RBH | 0.957406 | 0.731705 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0002650 | SBH | 10.063731 | 24.608522 | 48.732533 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0002560 | SBH | 1.340237 | 1.271107 | 3.703326 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0030800 | RBH | 17.552202 | 39.3217125 | 48.648222 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0002630 | SBH | 0.866992 | 0.291445 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0002560 | SBH | 1.725261 | 27.202848 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0002630 | SBH | 27.053274 | 37.464893 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0002720 | SBH | 4.257902 | 2.514659 | 4.156778 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0002670 | SBH | 1.651868 | 6.465827 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G002660 | SBH | 1.341111 | 4.911255 | 9.287803 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0002610 | SBH | 5.543172 | 36.460846 | 24.847034 |
