Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0002720 | OGI:02006180 | 12/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:1858239-1885697 | ||||||||
| Gene Symbol | SMC3, sudA | ||||||||||
| DNA seq | aggctagacaataaattcccattggtagtaagcggtaggttataatgtatacaagaataaatagcgatgttacaaccacgtcgccgatgcatgtaccactgaatacatgtgctatcctaaacagaacataatgataacacaatctacccatcagctgaaacttacaagtccaaaggctaactacatattcacaactagtacaattatccaaccatggaaatagaacatccaggcaaagccagatttcagcctgcttccactacctctacgttagcatctgcctgcagcacaccactggcaaaagcgcatttagtctcagctagcgttgtgtgtctggtcatgctcaatgaagtccagagcttgctcctttgacaccacattgatgtagctaaccctgttcttgtgcgtcacaccatagatcttatcagcaacttttgcaatttctggtcggaatgtcgttgctataaactgagtgtcagccatgtcagctagacggcggatcatatctggagcattagcttaaggaaaaacacatgcaaaagcttgtagcattccaaagatgataacaaacagatggacattatttgatagcacgcaagaaaacgagagggagggaactcagaagaaatataaaggatactgccgacagctgttctgtactgtggatccagagcagcatcgatctcatcaaacagatagaatggggctggatcacaacgctgaatggcaaaaatcagtgtcaatgccaccactgtcttctgtccaccagacaactgtttcatagactgtgtttctcccttgccagtaaaggaaacctgaaacgtgagtgtaccgcttttagaagcttcgacaaagattatgcataatatcaagatcggtataatccaaaatgagtataacaacttagtatcattatttatcatcgtccgatttttcaaagatctattgacatttgctcaatgaacagtatatatgcacaaatacataaaaagcatatgcaaaaagagcataccttgacttttacaccaatgtacttctcaattctcccttcaggatctggttcacgaggcccatcctcatcattatcatcatcatctgcatcaccatcctatcagggaggaaagcataagcattaattttcagaagagatcttaccttcgagacatcaatacatggaaggaaaattcagataactccaggcatatacataggtcataaaatcgaagttcaaaattcaaaaatgtgtcatcttgaattggaaatcaaacttaacatcatctttgcattgaagaatagcccaggtatacaaaacaaaagatacgatctaatgccaattcatggaaagcaacataggtaacagtaataactaatagcagcctgtagtccccagcaaattggagtacactagacatgaaacccaattcaaccaaggtgataggccagcgtaggagaattacaattttaccacaaccaaagagtacatacacactgaataccagggctaaaaggcaaaaagtgtgtgccatggaagcaaggtcggtaggtaaagcaaggaaaatattacctttttcctcatcataaccaaatgtccatggccaccttgcactagttcagagaacacttcacggaagtgccttgcaacacctttaaatgtacgttcgattgattcgtccttcctttggtctaaaactgatattagttctctgattttctgcaatgttattcagcaggttttatgagattctactcataggatacaagcgaaactaaaggcttttaaccaatggaaaatttcacctgatcaccagcatcaagttcagcccgtcttctctgtagttgttcacgttgttcggtgaagttaacatactggtcaagagcttttttgttgacatgactgaactgctgcaattgctcattgcagtcataaagcatcttctgcagctgcttcttatttttccgcttgtacctatagcattggccagacaaataagttaaaatggtattacagcgccacaaaattaatctgcagaataccgctaaacaaaaggtatgcattctggccaattcagccagttttacatggaaacaaaaccaggtagccataaaatacagtacgtttcaaaagcatctgcaggcaatgagcccaagtctcggatcttcttcatacactcctcttgcttagctaaatgcatgctcctgctgctcatgagctgttccaaatccttggcaccatcttgtacggtctgctccaggttagcttctagtgcctgtgtttaaagataagccattacataagaagtcaacaacaaatagggagttcttacaaatagttcatagctatgttcaacttaccttcagatcatctctctgtcttttcagttcctccatcttccttgtgaagttattaatagcatcgacattagctatccaaaagatcatttaggttagacttgcttcactgcttaagaagcataagcatatgcagaaggaaaataaaagtctatcaatgtgtctatacccttcaacattgcagtcaattcatcaagactcctcttcgaactttttagttcttgctctttcgattcagcttcaagaggcaaggtcttagagtctgcagatgaaattattgcttcaagctctttctggcgcctcataagattagttgatagattggtttccagttcttctttccttgtttcaatctacataataatttatagctgcattagagtttgcagaaagaatcgcccgaaacagaagcatgatacaaaatttgctggaacaacctcgatgcgactgtttttacataagagaaacttctcctttagttcagtaatttcagggttcaatcgtgaaagaagatctcgttcttctgaagttaactgatcaataagttcagtgcccatttcatcatttttcattgcaatgccagattggatttgctcaatttggttccggatgttgtcaagtgatttttcctgcaagatagaaactatcagatagagttgcaggactatagcaacataggcatttgatacacagctaatgactttcatattaaatatcaagatagtgaatctcccatgaactgcagtaaaagaaaaggagaaccaagtaccttctttccaagtgccttgtcaagtgataccatttgcttcatagcgctagcgatgtcaaccttaaattgttccaactctgatttggcatggtcacgctcagcatccatttgctgctgtttggtaactaaatctgtaattttcttatctatatgtatggaaagttaaggaaaaaaattgaaggacatataaaattcatctggcataaatagtaaacagcaactcagcaagagccttgagatgccaaatacatatattcaaactactttggaacttggagccaaacaaaacaaacaaacacaaaggaagccatgaactttgataaaattgagaatgggagatttgccatcttgtttcacaaacatgtgactccttgttgcacatgtcatagccacatcaatggcaaatccttgttgccaactattgacagtgactaatccctaaatctgctagttgataggcccaatatgttgaagaaccagtagcattcctaccattttggaagaggttacatgcacgaatgctagatcactacataagattctacaagtatcaaatctacatgatgtgcatgcttatctctaacaattagaagagtggcagaatgagctacggtgcaagcaggaaatattgaatttaatagaaaaccataaactccttatccatcaggtctttagtaagcaggacaagaagtatatctagcagaagtaggtgataacaggatgaaacacacagttgtgtaccggtctcatgtaaacagggagaaatgagtgtagactaaaggatatctcttagcttgcttcccacattctctagatgtgctgcctttttctcaattgcagttttattgtccctaattattttcacaaacttcagttttgagcgtctagagtcatagaaacctcctgtcatgccaccttttctggcaacttgatcacctggaaacatcgactctttatcagtattaaattattaattaatgttaacaatgacaactcaagtgaaaaagttcaagactaccatcaagtgtgatgcaatccagcccattgccgcgtgcaactttggtcgcagtttccaggtctcggcatattactgttctgccaaaaacctaacagaaatataaaagttaagacacaaatatatattacaacggaaggggtgctacttaatctggcccacatataagcatatagcagaaaaaagaccattccaaaaggctgcactaaaagtaaagaaaagtcccacgcaaacatgcgctcttgactccatgcacatataaatacatgggaaggaaaggagatgagcagtgtatgccaaaacataagttacagaagttcataatcatggcccacctagaaaagtaatacattactctcaagattagtttgtgctaaaatacagcgtatgcaagaactgaaagtctggtaggtttgattcatagacataatacaaaacagggtaaaatataatacaacataagatggtctgtcatggctgatgaagcaaagctgggtgtaaaacctccaagcaggcaagggtaagaaaagtatatgcagaactgtagcatgagtaagccagactttgtcatgcaggtgaaaggcaagattgactgacggaaaacctcaattacattaatgaaggtacccaataaaatatgcagagaccaactgaaagaagataacagaagaacgtggacaatacctgttcaaaggcacggcgatgatcggcccgatattttagtttcttcaacaatggaacgaaatcgggactttgggggcaactaacatctggaactttcactctattcagtggtataaaagtcacccgcccacctttttctcgagtcaatacttgaatgattcttgttgatatatcgtcattctc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| CDS seq | atgtatataaagaaggttgtggtagaaggatttaagagctacagggaggagatctcaacagaacctttcagcccaaaagttaatgtcgttgtcggtgcaaatggatctggcaaatcaaacttcttccatgctatacggtttgtccttagtgacatgtttcagaacctgcgcagtgaagacaggggagcccttcttcatgaaggtgctgacatctcagttctttcggctttcgttgagatagtgtttgataattcagacaaccgtattccagtcgagaaaaaggtggtacgcttgcgcaggacagtagcttcaaagaaggatgaatactacttggatgggaagcatatcagtaaaactgaagtcatgaatctgttagagaatgctggattttctcgctcaaatccatattacgttgtccagcagggaaaggggacctcttgtaagtggacattgattcatgatttattagcagccaacaaaagaaagcagattgatcaagttgtccactacttggaggaaaggttgagagaacttgatgaagagaaagaagaaatgaagaagtaccagcagctggacaaacaaagaagatcacttgagtataccatactggaccatgaactaaatgatactaggaacgaattagctttgatggatgataaccgaagaaaaatttctgaaagaatgtcccatgcggataatgaagtggtagatgtacgtgagaagatcaggagttttgagaaagaaataaaattctcaaccaaggggataaatgagaacaaggctcaaaaggaagatgtagagaagaagtgtacagaggtgcttaaggtagttgctcaaattgagcttgatttgagagatataaaagatagaattttgaatgaaaaattggcaaaggatgaagctgcgagggattcacaaagtgtgaggatggagagtgaaaggtcaaagtctgaattagctgagactagtaagggaggtttactccaagaagaaatccagaagcttaaagacaaaattaataacttgaatagctattttgagttctacgaaagtgaatcaaacaaattagagtccgcacttgcaaagaagcacagtgattacaatgacttgaggaagcagagagacaagcttcaagaagaaaggaattacgaagctaatgtgacagctgaaaaagataggctcaaggaaaatcttgtgaatgcaaaggagaagctgggcaatgcaacacctggggatatcataagaggcttaaattgtgttagcagaattaccatggaacatggtattacaggagttgttggtcctatactagagctgattgattgtgatgagaagcttttcactgctgttgaggtttttggcaggacagtaatatgcaaagacctggaaactgcgaccaaagttgcacgcgataacgggctaaattgcatcacgcttgatggtgatcaagttgccagaaaaggtcatatgacaggaggtttccatgactatagatgctcaaaactgaagtttgtaaaaacaattaagaacaatatgaaggcaattgaggaaaaggaggaacatctaaagaatgttgaaaggaatctaagtgatatcctttctccttgtttacatgacgctgataagaaaatgacagatttagttaccaaacagcagcaaatggatgctgaaagtgatcatgcaaaatcagagttggaacactttaaggttggcattgctagcactatgaagcaaataggatcacttgagaaggcactaggaaagaagatagaaacaaggaaagaagaattgaaagctaatctatcaactaatctcatgaggcgccagaaagagtttgaagcagtaatttcatccgcagattctaaaaccttgtctcttgaagctgaatcaaaagagcaagaattaaatagctctaagagcagtcttgatgatttgactgcgatgctgaaagctaatgtcgatgctatcaataactttacgataaagatagaggaactgaaaagacaaagggataatctgaagaatgcataccaatcctatttgtatggccaatgctacaggtacagacagaaaaataagaggcagctgcagaagatgctttacgactgcaatgaacagttgcagcagttcagacatgttaagaaaaaacctcttgactgtgtgaacttcacagaacaacgtgaacaactagagagaagaagggctgaacttgatgctggtgatcagaaaatcagggaactcgtgtcaattttagaccaaaggaaggatgaatcaattgaacgtacatttaagggagttgcgaggcacttccgagaagtattttctgaactagtgcaaggtggccatggacatttggttatgatgaagaaaaaagatggtgatgcaggcgacgaggatattgataatgacgaggatgggcctcgtgaaccagattctgaagatagaatggagaaaagaactacaaataatttgacacacctcaagctatggcatgaggcaaataatttgataattgttgtgatagaaggatttaagagctacagggaggagatctcaacagaacctttcagccccaaagttaatgtagttgttggggcaaatggatctggcaaatcaaatttcttccatgctatacggtttgtcctcagtgacatgtttcaaaacctgcgcagtgaagacaggggcgctcttcttcatgaaggtgctggtcactcggttgtctcggcttttgttgagatagtgtttgataattcagacaaccgtattccagttgacaaagaggaggtacgcctgcgcaggacagttgcttcaaagaaggatgaatactacttggatgggaagcatgttagtaaaactgaagtcatgaatctgctagagagtgctggattttctcgctctaatccatactacgttgtccagcagggaaagatggatgataaccgaagaaaaatttctgaaagaatgtcccatgcggataatgaagtggtagatgtacgtgagaaggtgaagacttttgacaaagaaataaaatactcaactaaggggataaatgataccaaggctcaaaaggaaggtgtagagaagaagcgtacagaagcactgaaggtagttgctcagattgagcttgatttgagagacataaaagacagaatcttgaacgagaaacgggcaaaggatgaagctgcgaaggatttacaaagcgtgaggatggagagtgaaaagtcaaagtccgaattagctgaaattagtaaggtgcatcaagccaaattaaaggaagaggaagaaatatcaaaaagcataatggaccgtgagaagcggttaagtatattgtaccaaaagcaggggagggcaacccaattcgcaaacaaagctgccagagataagtggcttcaaaaggaaattgatgatcttgagcgtgtgcttttatcaaatcgaaagcaggaaggtttacttcaagaagaaatccagaagcttaaagatgaaatcaataacttgaatagctacattgagtcccggaaaagtgaatcaagcaaattagagtctgcactagcaaagaaacacaatgactacaatgacttgaggaagcagagagatgagcttcaagaagaaaggaaatcattttggaaggaggaagctgatgtgacagctgaaattgataggctaaaggatgatcttgtgaaggcacaaaagagtttggaccatgcaacacctggggatatcagaagaggcttgaattctgttagcagaatcatcagggaccatggtattacaggagtttttggtcctgttttagagctggttgattgtgaagagaagttcttcactgctgttgaggtcactgcagggaacagtttgttccatgtggttgttgagaatgacgatatatcaacaagaatcattcaagtattgactcgagaaaaaggtgggcgggtgacttttataccactgaatagagtgaaagttccagatgttagttgcccccaaagtcccgatttcgttccattgttgaagaaactaaaatatcgggccgatcatcgccgtgcctttgaacaggtttttggcagaacagtaatatgccgagacctggaaactgcgaccaaagttgcacgcggcaatgggctggattgcatcacacttgatgataagaaaattacagatttagttaccaaacagcagcaaatggatgctgagcgtgaccatgccaaatcagagttggaacaatttaaggttgacatcgctagcgctatgaagcaaatggtatcacttgacaaggcacttggaaagaaggaaaaatcacttgacaacatccggaaccaaattgagcaaatccaatctggcattgcaatgaaaaatgatgaaatgggcactgaacttattgatcagttaacttcagaagaacgagatcttctttcacgattgaaccctgaaattactgaactaaaggagaagtttctcttatgtaaaaacagtcgcatcgagattgaaacaaggaaagaagaactggaaaccaatctatcaactaatcttatgaggcgccagaaagagcttgaagcaataatttcatctgcagactctaagaccttgcctcttgaagctgaatcgaaagagcaagaactaaaaagttcgaagaggagtcttgatgaattgactgcaatgttgaaggctaatgtcgatgctattaataacttcacaaggaagatggaggaactgaaaagacagagagatgatctgaaggcactagaagctaacctggagcagaccgtacaagatggtgccaaggatttggaacagctcatgagcagcaggagcatgcatttagctaagcaagaggagtgtatgaagaagatccgagacttgggctcattgcctgcagatgcttttgaaacagaactaatatcagttttagaccaaaggaaggacgaatcaatcgaacgtacatttaaaggtgttgcaaggcacttccgtgaagtgttctctgaactagtgcaaggtggccatggacatttggttatgatgaggaaaaaggtttcctttactggcaagggagaaacacagtctatgaaacagttgtctggtggacagaagacagtggtggcattgacactgatttttgccattcagcgttgtgatccagccccattctatctgtttgatgagatcgatgctgctctggatccacagtacagaacagctgtcggcaatatgatccgccgtctagctgacatggctgacactcagtttatagcaacgacattccgaccagaaattgcaaaagttgctgataagatctatggtgtgacgcacaagaacagggttagctacatcaatgtggtgtcaaaggagcaagctctggacttcattgagcatgaccagacacacaacgctagctga
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| Protein seq | MYIKKVVVEGFKSYREEISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSEDRGALLHEGADISVLSAFVEIVFDNSDNRIPVEKKVVRLRRTVASKKDEYYLDGKHISKTEVMNLLENAGFSRSNPYYVVQQGKGTSCKWTLIHDLLAANKRKQIDQVVHYLEERLRELDEEKEEMKKYQQLDKQRRSLEYTILDHELNDTRNELALMDDNRRKISERMSHADNEVVDVREKIRSFEKEIKFSTKGINENKAQKEDVEKKCTEVLKVVAQIELDLRDIKDRILNEKLAKDEAARDSQSVRMESERSKSELAETSKGGLLQEEIQKLKDKINNLNSYFEFYESESNKLESALAKKHSDYNDLRKQRDKLQEERNYEANVTAEKDRLKENLVNAKEKLGNATPGDIIRGLNCVSRITMEHGITGVVGPILELIDCDEKLFTAVEVFGRTVICKDLETATKVARDNGLNCITLDGDQVARKGHMTGGFHDYRCSKLKFVKTIKNNMKAIEEKEEHLKNVERNLSDILSPCLHDADKKMTDLVTKQQQMDAESDHAKSELEHFKVGIASTMKQIGSLEKALGKKIETRKEELKANLSTNLMRRQKEFEAVISSADSKTLSLEAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIKIEELKRQRDNLKNAYQSYLYGQCYRYRQKNKRQLQKMLYDCNEQLQQFRHVKKKPLDCVNFTEQREQLERRRAELDAGDQKIRELVSILDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDAGDEDIDNDEDGPREPDSEDRMEKRTTNNLTHLKLWHEANNLIIVVIEGFKSYREEISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSEDRGALLHEGAGHSVVSAFVEIVFDNSDNRIPVDKEEVRLRRTVASKKDEYYLDGKHVSKTEVMNLLESAGFSRSNPYYVVQQGKMDDNRRKISERMSHADNEVVDVREKVKTFDKEIKYSTKGINDTKAQKEGVEKKRTEALKVVAQIELDLRDIKDRILNEKRAKDEAAKDLQSVRMESEKSKSELAEISKVHQAKLKEEEEISKSIMDREKRLSILYQKQGRATQFANKAARDKWLQKEIDDLERVLLSNRKQEGLLQEEIQKLKDEINNLNSYIESRKSESSKLESALAKKHNDYNDLRKQRDELQEERKSFWKEEADVTAEIDRLKDDLVKAQKSLDHATPGDIRRGLNSVSRIIRDHGITGVFGPVLELVDCEEKFFTAVEVTAGNSLFHVVVENDDISTRIIQVLTREKGGRVTFIPLNRVKVPDVSCPQSPDFVPLLKKLKYRADHRRAFEQVFGRTVICRDLETATKVARGNGLDCITLDDKKITDLVTKQQQMDAERDHAKSELEQFKVDIASAMKQMVSLDKALGKKEKSLDNIRNQIEQIQSGIAMKNDEMGTELIDQLTSEERDLLSRLNPEITELKEKFLLCKNSRIEIETRKEELETNLSTNLMRRQKELEAIISSADSKTLPLEAESKEQELKSSKRSLDELTAMLKANVDAINNFTRKMEELKRQRDDLKALEANLEQTVQDGAKDLEQLMSSRSMHLAKQEECMKKIRDLGSLPADAFETELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMRKKVSFTGKGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADMADTQFIATTFRPEIAKVADKIYGVTHKNRVSYINVVSKEQALDFIEHDQTHNAS |
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| Function | Structural maintenance of chromosomes protein 3 [UniProtKB/Swiss-Prot:Q56YN8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0002720 | OsLiXu_02g0002720.01 | Chr02 | 1858244 | 1885697 | - | NAM | ||
| CDS seq | atgtatataaagaaggttgtggtagaaggatttaagagctacagggaggagatctcaacagaacctttcagcccaaaagttaatgtcgttgtcggtgcaaatggatctggcaaatcaaacttcttccatgctatacggtttgtccttagtgacatgtttcagaacctgcgcagtgaagacaggggagcccttcttcatgaaggtgctgacatctcagttctttcggctttcgttgagatagtgtttgataattcagacaaccgtattccagtcgagaaaaaggtggtacgcttgcgcaggacagtagcttcaaagaaggatgaatactacttggatgggaagcatatcagtaaaactgaagtcatgaatctgttagagaatgctggattttctcgctcaaatccatattacgttgtccagcagggaaaggggacctcttgtaagtggacattgattcatgatttattagcagccaacaaaagaaagcagattgatcaagttgtccactacttggaggaaaggttgagagaacttgatgaagagaaagaagaaatgaagaagtaccagcagctggacaaacaaagaagatcacttgagtataccatactggaccatgaactaaatgatactaggaacgaattagctttgatggatgataaccgaagaaaaatttctgaaagaatgtcccatgcggataatgaagtggtagatgtacgtgagaagatcaggagttttgagaaagaaataaaattctcaaccaaggggataaatgagaacaaggctcaaaaggaagatgtagagaagaagtgtacagaggtgcttaaggtagttgctcaaattgagcttgatttgagagatataaaagatagaattttgaatgaaaaattggcaaaggatgaagctgcgagggattcacaaagtgtgaggatggagagtgaaaggtcaaagtctgaattagctgagactagtaagggaggtttactccaagaagaaatccagaagcttaaagacaaaattaataacttgaatagctattttgagttctacgaaagtgaatcaaacaaattagagtccgcacttgcaaagaagcacagtgattacaatgacttgaggaagcagagagacaagcttcaagaagaaaggaattacgaagctaatgtgacagctgaaaaagataggctcaaggaaaatcttgtgaatgcaaaggagaagctgggcaatgcaacacctggggatatcataagaggcttaaattgtgttagcagaattaccatggaacatggtattacaggagttgttggtcctatactagagctgattgattgtgatgagaagcttttcactgctgttgaggtttttggcaggacagtaatatgcaaagacctggaaactgcgaccaaagttgcacgcgataacgggctaaattgcatcacgcttgatggtgatcaagttgccagaaaaggtcatatgacaggaggtttccatgactatagatgctcaaaactgaagtttgtaaaaacaattaagaacaatatgaaggcaattgaggaaaaggaggaacatctaaagaatgttgaaaggaatctaagtgatatcctttctccttgtttacatgacgctgataagaaaatgacagatttagttaccaaacagcagcaaatggatgctgaaagtgatcatgcaaaatcagagttggaacactttaaggttggcattgctagcactatgaagcaaataggatcacttgagaaggcactaggaaagaagatagaaacaaggaaagaagaattgaaagctaatctatcaactaatctcatgaggcgccagaaagagtttgaagcagtaatttcatccgcagattctaaaaccttgtctcttgaagctgaatcaaaagagcaagaattaaatagctctaagagcagtcttgatgatttgactgcgatgctgaaagctaatgtcgatgctatcaataactttacgataaagatagaggaactgaaaagacaaagggataatctgaagaatgcataccaatcctatttgtatggccaatgctacaggtacagacagaaaaataagaggcagctgcagaagatgctttacgactgcaatgaacagttgcagcagttcagacatgttaagaaaaaacctcttgactgtgtgaacttcacagaacaacgtgaacaactagagagaagaagggctgaacttgatgctggtgatcagaaaatcagggaactcgtgtcaattttagaccaaaggaaggatgaatcaattgaacgtacatttaagggagttgcgaggcacttccgagaagtattttctgaactagtgcaaggtggccatggacatttggttatgatgaagaaaaaagatggtgatgcaggcgacgaggatattgataatgacgaggatgggcctcgtgaaccagattctgaagatagaatggagaaaagaactacaaataatttgacacacctcaagctatggcatgaggcaaataatttgataattgttgtgatagaaggatttaagagctacagggaggagatctcaacagaacctttcagccccaaagttaatgtagttgttggggcaaatggatctggcaaatcaaatttcttccatgctatacggtttgtcctcagtgacatgtttcaaaacctgcgcagtgaagacaggggcgctcttcttcatgaaggtgctggtcactcggttgtctcggcttttgttgagatagtgtttgataattcagacaaccgtattccagttgacaaagaggaggtacgcctgcgcaggacagttgcttcaaagaaggatgaatactacttggatgggaagcatgttagtaaaactgaagtcatgaatctgctagagagtgctggattttctcgctctaatccatactacgttgtccagcagggaaagatggatgataaccgaagaaaaatttctgaaagaatgtcccatgcggataatgaagtggtagatgtacgtgagaaggtgaagacttttgacaaagaaataaaatactcaactaaggggataaatgataccaaggctcaaaaggaaggtgtagagaagaagcgtacagaagcactgaaggtagttgctcagattgagcttgatttgagagacataaaagacagaatcttgaacgagaaacgggcaaaggatgaagctgcgaaggatttacaaagcgtgaggatggagagtgaaaagtcaaagtccgaattagctgaaattagtaaggtgcatcaagccaaattaaaggaagaggaagaaatatcaaaaagcataatggaccgtgagaagcggttaagtatattgtaccaaaagcaggggagggcaacccaattcgcaaacaaagctgccagagataagtggcttcaaaaggaaattgatgatcttgagcgtgtgcttttatcaaatcgaaagcaggaaggtttacttcaagaagaaatccagaagcttaaagatgaaatcaataacttgaatagctacattgagtcccggaaaagtgaatcaagcaaattagagtctgcactagcaaagaaacacaatgactacaatgacttgaggaagcagagagatgagcttcaagaagaaaggaaatcattttggaaggaggaagctgatgtgacagctgaaattgataggctaaaggatgatcttgtgaaggcacaaaagagtttggaccatgcaacacctggggatatcagaagaggcttgaattctgttagcagaatcatcagggaccatggtattacaggagtttttggtcctgttttagagctggttgattgtgaagagaagttcttcactgctgttgaggtcactgcagggaacagtttgttccatgtggttgttgagaatgacgatatatcaacaagaatcattcaagtattgactcgagaaaaaggtgggcgggtgacttttataccactgaatagagtgaaagttccagatgttagttgcccccaaagtcccgatttcgttccattgttgaagaaactaaaatatcgggccgatcatcgccgtgcctttgaacaggtttttggcagaacagtaatatgccgagacctggaaactgcgaccaaagttgcacgcggcaatgggctggattgcatcacacttgatgataagaaaattacagatttagttaccaaacagcagcaaatggatgctgagcgtgaccatgccaaatcagagttggaacaatttaaggttgacatcgctagcgctatgaagcaaatggtatcacttgacaaggcacttggaaagaaggaaaaatcacttgacaacatccggaaccaaattgagcaaatccaatctggcattgcaatgaaaaatgatgaaatgggcactgaacttattgatcagttaacttcagaagaacgagatcttctttcacgattgaaccctgaaattactgaactaaaggagaagtttctcttatgtaaaaacagtcgcatcgagattgaaacaaggaaagaagaactggaaaccaatctatcaactaatcttatgaggcgccagaaagagcttgaagcaataatttcatctgcagactctaagaccttgcctcttgaagctgaatcgaaagagcaagaactaaaaagttcgaagaggagtcttgatgaattgactgcaatgttgaaggctaatgtcgatgctattaataacttcacaaggaagatggaggaactgaaaagacagagagatgatctgaaggcactagaagctaacctggagcagaccgtacaagatggtgccaaggatttggaacagctcatgagcagcaggagcatgcatttagctaagcaagaggagtgtatgaagaagatccgagacttgggctcattgcctgcagatgcttttgaaacagaactaatatcagttttagaccaaaggaaggacgaatcaatcgaacgtacatttaaaggtgttgcaaggcacttccgtgaagtgttctctgaactagtgcaaggtggccatggacatttggttatgatgaggaaaaaggtttcctttactggcaagggagaaacacagtctatgaaacagttgtctggtggacagaagacagtggtggcattgacactgatttttgccattcagcgttgtgatccagccccattctatctgtttgatgagatcgatgctgctctggatccacagtacagaacagctgtcggcaatatgatccgccgtctagctgacatggctgacactcagtttatagcaacgacattccgaccagaaattgcaaaagttgctgataagatctatggtgtgacgcacaagaacagggttagctacatcaatgtggtgtcaaaggagcaagctctggacttcattgagcatgaccagacacacaacgctagctga
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| Protein seq | MYIKKVVVEGFKSYREEISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSEDRGALLHEGADISVLSAFVEIVFDNSDNRIPVEKKVVRLRRTVASKKDEYYLDGKHISKTEVMNLLENAGFSRSNPYYVVQQGKGTSCKWTLIHDLLAANKRKQIDQVVHYLEERLRELDEEKEEMKKYQQLDKQRRSLEYTILDHELNDTRNELALMDDNRRKISERMSHADNEVVDVREKIRSFEKEIKFSTKGINENKAQKEDVEKKCTEVLKVVAQIELDLRDIKDRILNEKLAKDEAARDSQSVRMESERSKSELAETSKGGLLQEEIQKLKDKINNLNSYFEFYESESNKLESALAKKHSDYNDLRKQRDKLQEERNYEANVTAEKDRLKENLVNAKEKLGNATPGDIIRGLNCVSRITMEHGITGVVGPILELIDCDEKLFTAVEVFGRTVICKDLETATKVARDNGLNCITLDGDQVARKGHMTGGFHDYRCSKLKFVKTIKNNMKAIEEKEEHLKNVERNLSDILSPCLHDADKKMTDLVTKQQQMDAESDHAKSELEHFKVGIASTMKQIGSLEKALGKKIETRKEELKANLSTNLMRRQKEFEAVISSADSKTLSLEAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIKIEELKRQRDNLKNAYQSYLYGQCYRYRQKNKRQLQKMLYDCNEQLQQFRHVKKKPLDCVNFTEQREQLERRRAELDAGDQKIRELVSILDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDAGDEDIDNDEDGPREPDSEDRMEKRTTNNLTHLKLWHEANNLIIVVIEGFKSYREEISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSEDRGALLHEGAGHSVVSAFVEIVFDNSDNRIPVDKEEVRLRRTVASKKDEYYLDGKHVSKTEVMNLLESAGFSRSNPYYVVQQGKMDDNRRKISERMSHADNEVVDVREKVKTFDKEIKYSTKGINDTKAQKEGVEKKRTEALKVVAQIELDLRDIKDRILNEKRAKDEAAKDLQSVRMESEKSKSELAEISKVHQAKLKEEEEISKSIMDREKRLSILYQKQGRATQFANKAARDKWLQKEIDDLERVLLSNRKQEGLLQEEIQKLKDEINNLNSYIESRKSESSKLESALAKKHNDYNDLRKQRDELQEERKSFWKEEADVTAEIDRLKDDLVKAQKSLDHATPGDIRRGLNSVSRIIRDHGITGVFGPVLELVDCEEKFFTAVEVTAGNSLFHVVVENDDISTRIIQVLTREKGGRVTFIPLNRVKVPDVSCPQSPDFVPLLKKLKYRADHRRAFEQVFGRTVICRDLETATKVARGNGLDCITLDDKKITDLVTKQQQMDAERDHAKSELEQFKVDIASAMKQMVSLDKALGKKEKSLDNIRNQIEQIQSGIAMKNDEMGTELIDQLTSEERDLLSRLNPEITELKEKFLLCKNSRIEIETRKEELETNLSTNLMRRQKELEAIISSADSKTLPLEAESKEQELKSSKRSLDELTAMLKANVDAINNFTRKMEELKRQRDDLKALEANLEQTVQDGAKDLEQLMSSRSMHLAKQEECMKKIRDLGSLPADAFETELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMRKKVSFTGKGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADMADTQFIATTFRPEIAKVADKIYGVTHKNRVSYINVVSKEQALDFIEHDQTHNAS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0002720 | OsLiXu_02g0002720.02 | Chr02 | 1858239 | 1868211 | - | IsoSeq | ||
| CDS seq | atgcttttgaaacgtacaagcggaaaaataagaagcagctgcagaagatgctttatgactgcaatgagcaattgcagcagttcagtcatgtcaacaaaaaagctcttgaccagtatgttaacttcaccgaacaacgtgaacaactacagagaagacgggctgaacttgatgctggtgatcagaaaatcagag |
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| Protein seq | MLLKRTSGKIRSSCRRCFMTAMSNCSSSVMSTKKLLTSMLTSPNNVNNYREDGLNLMLVIRKSE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr02 | 1859053 | 1859803 | - | OsLiXu_02g0002720.02 | OsLiXu_02g0002720.01,OsLiXu_02g0002720.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.257902 | 2.514659 | 4.156778 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0133400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g04050 | RBH | 3.972421 | 3.283027 | 3.568315 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0133400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0002630 | RBH | 3.070608 | 19.482769 | 25.104746 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0002710 | RBH | 0.836289 | 4.726335 | 9.587358 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0002650 | RBH | 7.866574 | 12.625457 | 32.548679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0002620 | RBH | 0.957406 | 0.731705 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0002650 | RBH | 10.063731 | 24.608522 | 48.732533 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0002560 | RBH | 1.340237 | 1.271107 | 3.703326 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0031000 | RBH | 0.004064 | 0 | 0.795915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0002630 | RBH | 0.866992 | 0.291445 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0002560 | RBH | 1.725261 | 27.202848 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0002630 | RBH | 27.053274 | 37.464893 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0002670 | RBH | 1.651868 | 6.465827 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G002660 | RBH | 1.341111 | 4.911255 | 9.287803 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0002610 | RBH | 5.543172 | 36.460846 | 24.847034 |
