Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0699600 | OGI:01087400 | 8/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:28946550-28948064 | ||||||||
| Gene Symbol | OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62, OsMAPKKK62, MAPKKK62 | ||||||||||
| DNA seq | AAGATGTCAACTCGGTTAAAAATTGCTCATTCTAGTCAAAACAGTGAGAATCAGCCTTAAACCAATTCTTTGAACGGTTTTTGCCGGGGCCTTTTTTTTTAAAACGGAAGTTTTTACCGGGAGCTCAACGCTATGCAATCTATGAGCCCTTGATTGCAAGATGAATGGTAACAACAGGCAAATTTGTGCAGACTCGAAATTTATTACTCTGTTCCCGTTACAATGACAACCGAATTTTACAGTGTCGCTCCGGTGGCAATCAACCGGGCACAACGGCATATCACCGCGAACTCTCACACTCAGTTGTCTGTCGTACTCAATGAAACCACGCGCGCGTACAGTTCGCGTAACATAGCCATCGCCGTCCACGTCAACGAAATGGAGATCAATCTCCGCGTCCAATGCTTCCTCCCACCAAAGACCGAAATCTGCAGTAGTCACCACCATGGGCGCCGGTGTTTCCGAAACTTCAGATGGGTCGCTTTGCAAGTCGATCCAGCCATCCTCGGAGTCCCAGTCCGGCAACGCCGAGCAGGTGATCGCCAATGCGCTGATCCTCTTGGTTGCGCTCTGTGACATGCCTTCTTCTACTTCGTCGTCTTCATCAGATTCCCAGCATTCGGCGTTCAGCGTGCTCTTGGGGGACACCCAGCCGTGCTTCGGCGCCGTTTCGTCGATGTCGCTGGAGGCGGATGCGAGAAATGGGTGCTCCAGTAGCTGCGCGGCAGTGGGGCGGTCGCTTGGGTTCCTTGTGAAGCATCTGGATAGGAAATTCTTCGCCTCCGGGGAGAGCCATTCGGGAATCTCTGGCACAGCGTCCGTGTACCCGATCCGGTGGACGGCGGAGAAGACGTCGTCCATGTCGCTCCACGGGACGCGGCCTGTGGCCATCTCGATGATCGTGCAACCGAGAGCCCACACGTCGGCGGCCGGTCCCTGCTCCTCGCCTCGCGCCACCTCCGGCGCCATGAACGCCGGCGTGCCACCAATCGGCCGCTCGGAGTCAGTCCTCCTCGCGCACCCGAAGTCCGCGAGCTTGGCCCGCCCGTCGGCGCCGACCATGATGTTCCTGGCCTTGACGTCCCCGTGCACCAGCGAGTTCCCGTGGAGGTAGGCCAGCGCCCTCGCCACGTCCGCCGCGTACGCGCTGATGGCGCGCTCCGCGAGGCGGCCCCCGCTCCTCGCGGCCTCGTCGGCGAGCGACCCGCCAGGCGCGAACTCGAGGAACAGCTGGTACTCCCCGCCCGCCGCGGCGCGTGACCCGAGGCAGGGGACGATGTGCGGGGAGCAGAGCCCCGACATGACGCGCCCCTCGCGCCGCAGCTGCTCCGCCCCGCCCTCGCCGGCCGCCGACTTGACCGCCAGCAGCTCCCCCGACGCGTCGTCCGACGCGAGCCACACCACGGCGCCCGACGCGCCGCGGCCGAGCGTGCGGAGCCGCCTGAGCTGCTTCTGCATCACCGCAGCCGCATCCATCGATCTCACTTGCTGTGTTCGAGCTTTCGAAGGTCTTGG
More
|
||||||||||
| CDS seq | ATGGATGCGGCTGCGGTGATGCAGAAGCAGCTCAGGCGGCTCCGCACGCTCGGCCGCGGCGCGTCGGGCGCCGTGGTGTGGCTCGCGTCGGACGACGCGTCGGGGGAGCTGCTGGCGGTCAAGTCGGCGGCCGGCGAGGGCGGGGCGGAGCAGCTGCGGCGCGAGGGGCGCGTCATGTCGGGGCTCTGCTCCCCGCACATCGTCCCCTGCCTCGGGTCACGCGCCGCGGCGGGCGGGGAGTACCAGCTGTTCCTCGAGTTCGCGCCTGGCGGGTCGCTCGCCGACGAGGCCGCGAGGAGCGGGGGCCGCCTCGCGGAGCGCGCCATCAGCGCGTACGCGGCGGACGTGGCGAGGGCGCTGGCCTACCTCCACGGGAACTCGCTGGTGCACGGGGACGTCAAGGCCAGGAACATCATGGTCGGCGCCGACGGGCGGGCCAAGCTCGCGGACTTCGGGTGCGCGAGGAGGACTGACTCCGAGCGGCCGATTGGTGGCACGCCGGCGTTCATGGCGCCGGAGGTGGCGCGAGGCGAGGAGCAGGGACCGGCCGCCGACGTGTGGGCTCTCGGTTGCACGATCATCGAGATGGCCACAGGCCGCGTCCCGTGGAGCGACATGGACGACGTCTTCTCCGCCGTCCACCGGATCGGGTACACGGACGCTGTGCCAGAGATTCCCGAATGGCTCTCCCCGGAGGCGAAGAATTTCCTATCCAGATGCTTCACAAGGAACCCAAGCGACCGCCCCACTGCCGCGCAGCTACTGGAGCACCCATTTCTCGCATCCGCCTCCAGCGACATCGACGAAACGGCGCCGAAGCACGGCTGGGTGTCCCCCAAGAGCACGCTGAACGCCGAATGCTGGGAATCTGATGAAGACGACGAAGTAGAAGAAGGCATGTCACAGAGCGCAACCAAGAGGATCAGCGCATTGGCGATCACCTGCTCGGCGTTGCCGGACTGGGACTCCGAGGATGGCTGGATCGACTTGCAAAGCGACCCATCTGAAGTTTCGGAAACACCGGCGCCCATGGTGGTGACTACTGCAGATTTCGGTCTTTGGTGGGAGGAAGCATTGGACGCGGAGATTGATCTCCATTTCGTTGACGTGGACGGCGATGGCTATGTTACGCGAACTGTACGCGCGCGTGGTTTCATTGAGTACGACAGACAACTGAGTGTGAGAGTTCGCGGTGATATGCCGTTGTGCCCGGTTGATTGCCACCGGAGCGACACTGTAAAATTCGGTTGTCATTGTAACGGGAACAGAGTAATAAATTTCGAGTCTGCACAAATTTGCCTGTTGTTACCATTCATCTTGCAATCAAGGGCTCATAGATTGCATAGCGTTGAGCTCCCGGTAAAAACTTCCGTTTTAAAAAAAAAGGCCCCGGCAAAAACCGTTCAAAGAATTGGTTTAAGGCTGATTCTCACTGTTTTGACTAGAATGAGCAATTTTTAA
More
|
||||||||||
| Protein seq | MDAAAVMQKQLRRLRTLGRGASGAVVWLASDDASGELLAVKSAAGEGGAEQLRREGRVMSGLCSPHIVPCLGSRAAAGGEYQLFLEFAPGGSLADEAARSGGRLAERAISAYAADVARALAYLHGNSLVHGDVKARNIMVGADGRAKLADFGCARRTDSERPIGGTPAFMAPEVARGEEQGPAADVWALGCTIIEMATGRVPWSDMDDVFSAVHRIGYTDAVPEIPEWLSPEAKNFLSRCFTRNPSDRPTAAQLLEHPFLASASSDIDETAPKHGWVSPKSTLNAECWESDEDDEVEEGMSQSATKRISALAITCSALPDWDSEDGWIDLQSDPSEVSETPAPMVVTTADFGLWWEEALDAEIDLHFVDVDGDGYVTRTVRARGFIEYDRQLSVRVRGDMPLCPVDCHRSDTVKFGCHCNGNRVINFESAQICLLLPFILQSRAHRLHSVELPVKTSVLKKKAPAKTVQRIGLRLILTVLTRMSNF |
||||||||||
| Function | Mitogen-activated protein kinase kinase kinase 17 [UniProtKB/Swiss-Prot:O80888] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0699600 | Os01t0699600-01 | Chr01 | 28946550 | 28948064 | - | irgsp1_rep | ||
| CDS seq | ATGGATGCGGCTGCGGTGATGCAGAAGCAGCTCAGGCGGCTCCGCACGCTCGGCCGCGGCGCGTCGGGCGCCGTGGTGTGGCTCGCGTCGGACGACGCGTCGGGGGAGCTGCTGGCGGTCAAGTCGGCGGCCGGCGAGGGCGGGGCGGAGCAGCTGCGGCGCGAGGGGCGCGTCATGTCGGGGCTCTGCTCCCCGCACATCGTCCCCTGCCTCGGGTCACGCGCCGCGGCGGGCGGGGAGTACCAGCTGTTCCTCGAGTTCGCGCCTGGCGGGTCGCTCGCCGACGAGGCCGCGAGGAGCGGGGGCCGCCTCGCGGAGCGCGCCATCAGCGCGTACGCGGCGGACGTGGCGAGGGCGCTGGCCTACCTCCACGGGAACTCGCTGGTGCACGGGGACGTCAAGGCCAGGAACATCATGGTCGGCGCCGACGGGCGGGCCAAGCTCGCGGACTTCGGGTGCGCGAGGAGGACTGACTCCGAGCGGCCGATTGGTGGCACGCCGGCGTTCATGGCGCCGGAGGTGGCGCGAGGCGAGGAGCAGGGACCGGCCGCCGACGTGTGGGCTCTCGGTTGCACGATCATCGAGATGGCCACAGGCCGCGTCCCGTGGAGCGACATGGACGACGTCTTCTCCGCCGTCCACCGGATCGGGTACACGGACGCTGTGCCAGAGATTCCCGAATGGCTCTCCCCGGAGGCGAAGAATTTCCTATCCAGATGCTTCACAAGGAACCCAAGCGACCGCCCCACTGCCGCGCAGCTACTGGAGCACCCATTTCTCGCATCCGCCTCCAGCGACATCGACGAAACGGCGCCGAAGCACGGCTGGGTGTCCCCCAAGAGCACGCTGAACGCCGAATGCTGGGAATCTGATGAAGACGACGAAGTAGAAGAAGGCATGTCACAGAGCGCAACCAAGAGGATCAGCGCATTGGCGATCACCTGCTCGGCGTTGCCGGACTGGGACTCCGAGGATGGCTGGATCGACTTGCAAAGCGACCCATCTGAAGTTTCGGAAACACCGGCGCCCATGGTGGTGACTACTGCAGATTTCGGTCTTTGGTGGGAGGAAGCATTGGACGCGGAGATTGATCTCCATTTCGTTGACGTGGACGGCGATGGCTATGTTACGCGAACTGTACGCGCGCGTGGTTTCATTGAGTACGACAGACAACTGAGTGTGAGAGTTCGCGGTGATATGCCGTTGTGCCCGGTTGATTGCCACCGGAGCGACACTGTAAAATTCGGTTGTCATTGTAACGGGAACAGAGTAATAAATTTCGAGTCTGCACAAATTTGCCTGTTGTTACCATTCATCTTGCAATCAAGGGCTCATAGATTGCATAGCGTTGAGCTCCCGGTAAAAACTTCCGTTTTAAAAAAAAAGGCCCCGGCAAAAACCGTTCAAAGAATTGGTTTAAGGCTGATTCTCACTGTTTTGACTAGAATGAGCAATTTTTAA
More
|
|||||||
| Protein seq | MDAAAVMQKQLRRLRTLGRGASGAVVWLASDDASGELLAVKSAAGEGGAEQLRREGRVMSGLCSPHIVPCLGSRAAAGGEYQLFLEFAPGGSLADEAARSGGRLAERAISAYAADVARALAYLHGNSLVHGDVKARNIMVGADGRAKLADFGCARRTDSERPIGGTPAFMAPEVARGEEQGPAADVWALGCTIIEMATGRVPWSDMDDVFSAVHRIGYTDAVPEIPEWLSPEAKNFLSRCFTRNPSDRPTAAQLLEHPFLASASSDIDETAPKHGWVSPKSTLNAECWESDEDDEVEEGMSQSATKRISALAITCSALPDWDSEDGWIDLQSDPSEVSETPAPMVVTTADFGLWWEEALDAEIDLHFVDVDGDGYVTRTVRARGFIEYDRQLSVRVRGDMPLCPVDCHRSDTVKFGCHCNGNRVINFESAQICLLLPFILQSRAHRLHSVELPVKTSVLKKKAPAKTVQRIGLRLILTVLTRMSNF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0699600 | RBH | 0.556559 | 0.0 | 0.453432 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g50420 | RBH | 0.300916 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0545400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0030370 | RBH | 0.0 | 0.0 | 0.411344 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029990 | SBH | 0.0 | 0.0 | 0.838919 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0030340 | RBH | 0.0 | 0.0 | 0.627434 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029610 | SBH | 0.0 | 0.019861 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0029280 | SBH | 0.0 | 0.0 | 2.325252 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0480800 | RBH | 3.411446 | 167.6606215 | 15.317188 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0029010 | RBH | 0.0 | 0.051920 | 0.404378 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0471300 | RBH | 2.4634775 | 172.8304595 | 0.457716 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0029260 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0029200 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0029460 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029630 | SBH | 0.404072 | 0.160759 | 0.659123 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029440 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029870 | RBH | 0.0 | 0.214505 | 0.501729 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0029560 | RBH | 0.0 | 1.331000 | 5.009419 |
