Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0545400 | OGI:05073370 | 9/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:27075999-27077365 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGAGGAGAAAACATGGTATGAATTCAATTGCAATGTGTTTGTTACAAAATGGTGTTTTACATAGTACTTGATCGAAAACTAAATTCGAAGGGGAAATAATGTGCTGAGCATTGGCTTCTCCCACATTGTGGGTGGTGTTGCCATTGCCGCTGTCCACGTCAATGTGGGGAAGCTCGAATTCTGCGGTTCTGATGTCGCCGTTGAGGTCAGTCGTCGTCTCCTCGTCGGCCGGCGAGGTGGTGGTCTCGCAGGATTCTTCGGTAGGGGTGGAGATCACATCGATCCAGCCGTCGTCGGAGTCCCAATCCGGCAGCGACGAGGCGGCGCAGGCCAGTGAACCGATCCTCTCGGCCGTGCTCTGCGACAGCTCGTCGTCTTCCTCCTCGTCGGTGTCGGACTCCCACAATGCGGCGTCCAGGGTGCTCTTGGGGGACACCCATTTGGACTTCGCGGCCTCCGGCTTGCCGTCGCCGGCGGCGGAGGCGACGAACGGGTGTTCTAGCAGCTGCGCCGCCGTGCTCCGGTCAATGGGGCGCCGTTGCAAGCACCTGGCCAAGAAGTCCTTCGCGTCGGCGGACAGCCAACCGGGGACCTCGGGGACGGCCTCCGTGTAGCCAATCCGGTGCACCGCCGCGAGCACGTCGTCCATGTCGCTCCACGGCGCGCGGCCGGTGGCCATCTCGATGACCGTGCAGCCGAGCGCCCAGACGTCGGCGGCTGGGCTCTGCTCCTCCCCGCGCGCGACCTCGGGCGCCATGAACGCCGGCGTGCCGCCGATCGGCCGGCCCGAATCCGCCCACCTCGCGCACCCGAAGTCCGCGAGCTTCGCCCGGCCGTCGCCGCCGATCACGACATTCCTCGCCTTGACGTCCCCGTGCACCAGCCCCATCCCGTGGAGGTACGCGAGCCCCCTGGCCACGTCCACCGCGTACTCCCCGACGGCGCACTCCTCCATCCGCCCGCCGCACCTCGCCGCCACGTCGGCGAGCGACCCGCCGGGGGCGAACTCGAGGAACATCTGGTACGACCCGTCGCGCCCCACGCGTCCGCCGATGCAGGGGACGACGTGCGGCGAGCTCAGCCCGGCCATCACCCCCTGCTCCCGCCTCAGCGCCGCCGCGCCCGCCGCGCCCACGGACTTGACGGCGAACAGCTCCCCCGACGCGTCGTCCGCCGCCAGGAACACCTCCGCCCCGGACGCCCCGCGCCCCAGCGTCCGCACCCTCGTCCATTGCCTGCTCACCGCCGCCGCCGCCGCCACCGCCACCGCCATCTCTCCGGTGATGTGTCGCGCCGCCGCCGCCGTGGTGGTTTCTGTTGGTTCCCTCTTTGTCTCGAGCTTGAGCTAACTTGTGGCGAGTTGTTT
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| CDS seq | ATGGCGGTGGCGGTGGCGGCGGCGGCGGCGGTGAGCAGGCAATGGACGAGGGTGCGGACGCTGGGGCGCGGGGCGTCCGGGGCGGAGGTGTTCCTGGCGGCGGACGACGCGTCGGGGGAGCTGTTCGCCGTCAAGTCCGTGGGCGCGGCGGGCGCGGCGGCGCTGAGGCGGGAGCAGGGGGTGATGGCCGGGCTGAGCTCGCCGCACGTCGTCCCCTGCATCGGCGGACGCGTGGGGCGCGACGGGTCGTACCAGATGTTCCTCGAGTTCGCCCCCGGCGGGTCGCTCGCCGACGTGGCGGCGAGGTGCGGCGGGCGGATGGAGGAGTGCGCCGTCGGGGAGTACGCGGTGGACGTGGCCAGGGGGCTCGCGTACCTCCACGGGATGGGGCTGGTGCACGGGGACGTCAAGGCGAGGAATGTCGTGATCGGCGGCGACGGCCGGGCGAAGCTCGCGGACTTCGGGTGCGCGAGGTGGGCGGATTCGGGCCGGCCGATCGGCGGCACGCCGGCGTTCATGGCGCCCGAGGTCGCGCGCGGGGAGGAGCAGAGCCCAGCCGCCGACGTCTGGGCGCTCGGCTGCACGGTCATCGAGATGGCCACCGGCCGCGCGCCGTGGAGCGACATGGACGACGTGCTCGCGGCGGTGCACCGGATTGGCTACACGGAGGCCGTCCCCGAGGTCCCCGGTTGGCTGTCCGCCGACGCGAAGGACTTCTTGGCCAGGTGCTTGCAACGGCGCCCCATTGACCGGAGCACGGCGGCGCAGCTGCTAGAACACCCGTTCGTCGCCTCCGCCGCCGGCGACGGCAAGCCGGAGGCCGCGAAGTCCAAATGGGTGTCCCCCAAGAGCACCCTGGACGCCGCATTGTGGGAGTCCGACACCGACGAGGAGGAAGACGACGAGCTGTCGCAGAGCACGGCCGAGAGGATCGGTTCACTGGCCTGCGCCGCCTCGTCGCTGCCGGATTGGGACTCCGACGACGGCTGGATCGATGTGATCTCCACCCCTACCGAAGAATCCTGCGAGACCACCACCTCGCCGGCCGACGAGGAGACGACGACTGACCTCAACGGCGACATCAGAACCGCAGAATTCGAGCTTCCCCACATTGACGTGGACAGCGGCAATGGCAACACCACCCACAATGTGGGAGAAGCCAATGCTCAGCACATTATTTCCCCTTCGAATTTAGTTTTCGATCAAGTACTATGTAAAACACCATTTTGTAACAAACACATTGCAATTGAATTCATACCATGTTTTCTCCTCAC
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| Protein seq | MAVAVAAAAAVSRQWTRVRTLGRGASGAEVFLAADDASGELFAVKSVGAAGAAALRREQGVMAGLSSPHVVPCIGGRVGRDGSYQMFLEFAPGGSLADVAARCGGRMEECAVGEYAVDVARGLAYLHGMGLVHGDVKARNVVIGGDGRAKLADFGCARWADSGRPIGGTPAFMAPEVARGEEQSPAADVWALGCTVIEMATGRAPWSDMDDVLAAVHRIGYTEAVPEVPGWLSADAKDFLARCLQRRPIDRSTAAQLLEHPFVASAAGDGKPEAAKSKWVSPKSTLDAALWESDTDEEEDDELSQSTAERIGSLACAASSLPDWDSDDGWIDVISTPTEESCETTTSPADEETTTDLNGDIRTAEFELPHIDVDSGNGNTTHNVGEANAQHIISPSNLVFDQVLCKTPFCNKHIAIEFIPCFLL |
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| Function | Mitogen-activated protein kinase kinase kinase 17 [UniProtKB/Swiss-Prot:O80888] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0545400 | Os05t0545400-01 | Chr05 | 27075999 | 27077365 | - | irgsp1_rep | ||
| CDS seq | ATGGCGGTGGCGGTGGCGGCGGCGGCGGCGGTGAGCAGGCAATGGACGAGGGTGCGGACGCTGGGGCGCGGGGCGTCCGGGGCGGAGGTGTTCCTGGCGGCGGACGACGCGTCGGGGGAGCTGTTCGCCGTCAAGTCCGTGGGCGCGGCGGGCGCGGCGGCGCTGAGGCGGGAGCAGGGGGTGATGGCCGGGCTGAGCTCGCCGCACGTCGTCCCCTGCATCGGCGGACGCGTGGGGCGCGACGGGTCGTACCAGATGTTCCTCGAGTTCGCCCCCGGCGGGTCGCTCGCCGACGTGGCGGCGAGGTGCGGCGGGCGGATGGAGGAGTGCGCCGTCGGGGAGTACGCGGTGGACGTGGCCAGGGGGCTCGCGTACCTCCACGGGATGGGGCTGGTGCACGGGGACGTCAAGGCGAGGAATGTCGTGATCGGCGGCGACGGCCGGGCGAAGCTCGCGGACTTCGGGTGCGCGAGGTGGGCGGATTCGGGCCGGCCGATCGGCGGCACGCCGGCGTTCATGGCGCCCGAGGTCGCGCGCGGGGAGGAGCAGAGCCCAGCCGCCGACGTCTGGGCGCTCGGCTGCACGGTCATCGAGATGGCCACCGGCCGCGCGCCGTGGAGCGACATGGACGACGTGCTCGCGGCGGTGCACCGGATTGGCTACACGGAGGCCGTCCCCGAGGTCCCCGGTTGGCTGTCCGCCGACGCGAAGGACTTCTTGGCCAGGTGCTTGCAACGGCGCCCCATTGACCGGAGCACGGCGGCGCAGCTGCTAGAACACCCGTTCGTCGCCTCCGCCGCCGGCGACGGCAAGCCGGAGGCCGCGAAGTCCAAATGGGTGTCCCCCAAGAGCACCCTGGACGCCGCATTGTGGGAGTCCGACACCGACGAGGAGGAAGACGACGAGCTGTCGCAGAGCACGGCCGAGAGGATCGGTTCACTGGCCTGCGCCGCCTCGTCGCTGCCGGATTGGGACTCCGACGACGGCTGGATCGATGTGATCTCCACCCCTACCGAAGAATCCTGCGAGACCACCACCTCGCCGGCCGACGAGGAGACGACGACTGACCTCAACGGCGACATCAGAACCGCAGAATTCGAGCTTCCCCACATTGACGTGGACAGCGGCAATGGCAACACCACCCACAATGTGGGAGAAGCCAATGCTCAGCACATTATTTCCCCTTCGAATTTAGTTTTCGATCAAGTACTATGTAAAACACCATTTTGTAACAAACACATTGCAATTGAATTCATACCATGTTTTCTCCTCAC
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| Protein seq | MAVAVAAAAAVSRQWTRVRTLGRGASGAEVFLAADDASGELFAVKSVGAAGAAALRREQGVMAGLSSPHVVPCIGGRVGRDGSYQMFLEFAPGGSLADVAARCGGRMEECAVGEYAVDVARGLAYLHGMGLVHGDVKARNVVIGGDGRAKLADFGCARWADSGRPIGGTPAFMAPEVARGEEQSPAADVWALGCTVIEMATGRAPWSDMDDVLAAVHRIGYTEAVPEVPGWLSADAKDFLARCLQRRPIDRSTAAQLLEHPFVASAAGDGKPEAAKSKWVSPKSTLDAALWESDTDEEEDDELSQSTAERIGSLACAASSLPDWDSDDGWIDVISTPTEESCETTTSPADEETTTDLNGDIRTAEFELPHIDVDSGNGNTTHNVGEANAQHIISPSNLVFDQVLCKTPFCNKHIAIEFIPCFLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0545400 | RBH | 0.0 | 0.732628 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46760 | RBH | 0.0 | 0.474696 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0699400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025690 | SBH | 0.0 | 0.000000 | 0.187883 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025440 | SBH | 0.0 | 0.0 | 0.229361 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025450 | RBH | 0.0 | 0.0 | 0.685050 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025490 | RBH | 0.0 | 0.063082 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025470 | SBH | 0.347598 | 0.0 | 0.716848 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0421500 | RBH | 1.324462 | 34.2133215 | 3.311862 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025130 | SBH | 0.032381 | 0.053681 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0433200 | RBH | 1.8260285 | 46.009832 | 1.5680845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0025290 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025190 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025370 | SBH | 0.061484 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025430 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024870 | RBH | 0.112502 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025290 | RBH | 0.0 | 2.994737 | 0.0 |
