Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0694000 | OGI:01013090 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:28666309-28668105 | ||||||||
| Gene Symbol | LRR-RLK | ||||||||||
| DNA seq | ATGGGGCCTTCAAAATATCGTGGGTCTTGATCTGGCTGGAAATGCTTTGACTGGCTCTTTGCCAGAAGTTGAAAATCTGAAAGCAACAACATTTATGAACCTTTCTTCCAATCGATTTTCTGGTAATTTACCAGCCTCACTTGAACTATTTAGCACACTGACCTACTTAGACCTTTCATATAACTCCTTCTCTGGAACAATTCCAAAGTCCTTTGCAAATCTTAGTCCTCTCACTACCCTGAATCTCTCTTTCAATAGATTGGATGGGCAAATCCCAAATGGTGGTGTGTTCTCAAACATTACCCTCCAATCTTTGAGAGGGAACACAGCACTCTGTGGTCTTCCACGCCTTGGTTTCCCCCATTGCAAAAATGACCATCCTCTTCAGGGTAAAAAATCAAGGCTTCTAAAAGTAGTTCTTATTCCAAGCATATTGGCTACTGGAATAATAGCAATCTGCTTGCTGTTTTCGATTAAATTTTGCACTGGCAAGAAACTGAAGGGCCTGCCGATTACTATGAGTTTGGAGTCAAACAACAACCATAGGGCTATCTCCTACTATGAGCTGGTTCGTGCCACAAACAACTTCAATAGTGATCACCTACTAGGAGCTGGAAGCTTTGGCAAAGTCTTCAAGGGCAATCTAGACGATGAGCAGATCGTCGCGATAAAAGTCCTCAACATGGACATGGAAAGAGCTACCATGAGTTTTGAAGTCGAGTGCCGTGCACTTCGCATGGCTCGGCACCGAAACTTGGTGAGGATACTCACCACCTGTTCGAATCTGGACTTCAAGGCGTTGGTGCTGCAGTACATGCCCAATGGGAGCCTGGACGAATGGTTGCTGTACAGTGACAGGCATTGCCTTGGATTGATGCAGAGGGTGAGCATCATGTTGGATGCGGCGCTCGCTATGGCTTACCTACACCATGAGCACTTTGAGGTAGTCCTCCACTGTGATCTGAAGCCAAGCAACGTGCTGCTTGACGCAGACATGACGGCTTGCATCGCAGACTTTGGAATTGCAAGGTTATTGCTAGGAGAGGACACCTCCATATTCTCCAGGAGCATGCCAGGAACAATCGGATACATGGCACCAGGTAATCACTTGTCGATTTACCGTTCATCTTTGGTTCCACTGAAATCGCCAATTTCTGCAGATCCCCCTTGATCTTTGTTTACCATGAACATCACAGAGTACGGGTCGACAGGAAAAGCATCGCGAAAGAGCGACGTGTTCAGCTACGGGGTCATGCTCCTGGAGGTCTTCACGGGGAAGAAGCCAACCGACGCCATGTTCGTCGGAGAGCTGAGCTTGAGGGAGTGGGTCAACCGAGCGCTCCCGTCAAGGCTCGCCGACGTCGTACATCCTGGCATCTCTCTGTATGACGACACGGTGAGCAGCGATGATGCCCAAGGTGAATCAACCGGCAGCAGGAGCTGCTTAGCGCAGCTGCTGGATTTGGGGCTGCAGTGTACCAGAGACTTGCCTGAGGACAGGGTGACGATGAAGGATGTGACTGTGAAACTGCAGCGGATCAAGGAGGTATTACAAGCCTAGATAGTCTTGTCCTGCAGCCCTGCAGATGATAACCCAAAGCTGGCAAGGCCATGTGTCATCTGTGGTGGTTGCAAATGCTGAACTGCATCATGAAAGCTGTAGCCTTCCTTGAAAAGATACCTGTAACAGTAGTTGAGTTGCAGGTTTGCAGCCATCTAACAAAAAGTAATATACTACGTGTTAGAGAGTTGTTTAGGGCTTAATCCTCCAATAACCTGCCAAAGAACGCAATGAAT
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| CDS seq | TGGGGCCTTCAAAATATCGTGGGTCTTGATCTGGCTGGAAATGCTTTGACTGGCTCTTTGCCAGAAGTTGAAAATCTGAAAGCAACAACATTTATGAACCTTTCTTCCAATCGATTTTCTGGTAATTTACCAGCCTCACTTGAACTATTTAGCACACTGACCTACTTAGACCTTTCATATAACTCCTTCTCTGGAACAATTCCAAAGTCCTTTGCAAATCTTAGTCCTCTCACTACCCTGAATCTCTCTTTCAATAGATTGGATGGGCAAATCCCAAATGGTGGTGTGTTCTCAAACATTACCCTCCAATCTTTGAGAGGGAACACAGCACTCTGTGGTCTTCCACGCCTTGGTTTCCCCCATTGCAAAAATGACCATCCTCTTCAGGGTAAAAAATCAAGGCTTCTAAAAGTAGTTCTTATTCCAAGCATATTGGCTACTGGAATAATAGCAATCTGCTTGCTGTTTTCGATTAAATTTTGCACTGGCAAGAAACTGAAGGGCCTGCCGATTACTATGAGTTTGGAGTCAAACAACAACCATAGGGCTATCTCCTACTATGAGCTGGTTCGTGCCACAAACAACTTCAATAGTGATCACCTACTAGGAGCTGGAAGCTTTGGCAAAGTCTTCAAGGGCAATCTAGACGATGAGCAGATCGTCGCGATAAAAGTCCTCAACATGGACATGGAAAGAGCTACCATGAGTTTTGAAGTCGAGTGCCGTGCACTTCGCATGGCTCGGCACCGAAACTTGGTGAGGATACTCACCACCTGTTCGAATCTGGACTTCAAGGCGTTGGTGCTGCAGTACATGCCCAATGGGAGCCTGGACGAATGGTTGCTGTACAGTGACAGGCATTGCCTTGGATTGATGCAGAGGGTGAGCATCATGTTGGATGCGGCGCTCGCTATGGCTTACCTACACCATGAGCACTTTGAGGTAGTCCTCCACTGTGATCTGAAGCCAAGCAACGTGCTGCTTGACGCAGACATGACGGCTTGCATCGCAGACTTTGGAATTGCAAGGTTATTGCTAGGAGAGGACACCTCCATATTCTCCAGGAGCATGCCAGGAACAATCGGATACATGGCACCAGAGTACGGGTCGACAGGAAAAGCATCGCGAAAGAGCGACGTGTTCAGCTACGGGGTCATGCTCCTGGAGGTCTTCACGGGGAAGAAGCCAACCGACGCCATGTTCGTCGGAGAGCTGAGCTTGAGGGAGTGGGTCAACCGAGCGCTCCCGTCAAGGCTCGCCGACGTCGTACATCCTGGCATCTCTCTGTATGACGACACGGTGAGCAGCGATGATGCCCAAGGTGAATCAACCGGCAGCAGGAGCTGCTTAGCGCAGCTGCTGGATTTGGGGCTGCAGTGTACCAGAGACTTGCCTGAGGACAGGGTGACGATGAAGGATGTGACTGTGAAACTGCAGCGGATCAAGGAGGTATTACAAGCCTAG
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| Protein seq | WGLQNIVGLDLAGNALTGSLPEVENLKATTFMNLSSNRFSGNLPASLELFSTLTYLDLSYNSFSGTIPKSFANLSPLTTLNLSFNRLDGQIPNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLLKVVLIPSILATGIIAICLLFSIKFCTGKKLKGLPITMSLESNNNHRAISYYELVRATNNFNSDHLLGAGSFGKVFKGNLDDEQIVAIKVLNMDMERATMSFEVECRALRMARHRNLVRILTTCSNLDFKALVLQYMPNGSLDEWLLYSDRHCLGLMQRVSIMLDAALAMAYLHHEHFEVVLHCDLKPSNVLLDADMTACIADFGIARLLLGEDTSIFSRSMPGTIGYMAPEYGSTGKASRKSDVFSYGVMLLEVFTGKKPTDAMFVGELSLREWVNRALPSRLADVVHPGISLYDDTVSSDDAQGESTGSRSCLAQLLDLGLQCTRDLPEDRVTMKDVTVKLQRIKEVLQA |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0694000 | Os01t0694000-01 | Chr01 | 28666309 | 28668105 | + | irgsp1_rep | ||
| CDS seq | TGGGGCCTTCAAAATATCGTGGGTCTTGATCTGGCTGGAAATGCTTTGACTGGCTCTTTGCCAGAAGTTGAAAATCTGAAAGCAACAACATTTATGAACCTTTCTTCCAATCGATTTTCTGGTAATTTACCAGCCTCACTTGAACTATTTAGCACACTGACCTACTTAGACCTTTCATATAACTCCTTCTCTGGAACAATTCCAAAGTCCTTTGCAAATCTTAGTCCTCTCACTACCCTGAATCTCTCTTTCAATAGATTGGATGGGCAAATCCCAAATGGTGGTGTGTTCTCAAACATTACCCTCCAATCTTTGAGAGGGAACACAGCACTCTGTGGTCTTCCACGCCTTGGTTTCCCCCATTGCAAAAATGACCATCCTCTTCAGGGTAAAAAATCAAGGCTTCTAAAAGTAGTTCTTATTCCAAGCATATTGGCTACTGGAATAATAGCAATCTGCTTGCTGTTTTCGATTAAATTTTGCACTGGCAAGAAACTGAAGGGCCTGCCGATTACTATGAGTTTGGAGTCAAACAACAACCATAGGGCTATCTCCTACTATGAGCTGGTTCGTGCCACAAACAACTTCAATAGTGATCACCTACTAGGAGCTGGAAGCTTTGGCAAAGTCTTCAAGGGCAATCTAGACGATGAGCAGATCGTCGCGATAAAAGTCCTCAACATGGACATGGAAAGAGCTACCATGAGTTTTGAAGTCGAGTGCCGTGCACTTCGCATGGCTCGGCACCGAAACTTGGTGAGGATACTCACCACCTGTTCGAATCTGGACTTCAAGGCGTTGGTGCTGCAGTACATGCCCAATGGGAGCCTGGACGAATGGTTGCTGTACAGTGACAGGCATTGCCTTGGATTGATGCAGAGGGTGAGCATCATGTTGGATGCGGCGCTCGCTATGGCTTACCTACACCATGAGCACTTTGAGGTAGTCCTCCACTGTGATCTGAAGCCAAGCAACGTGCTGCTTGACGCAGACATGACGGCTTGCATCGCAGACTTTGGAATTGCAAGGTTATTGCTAGGAGAGGACACCTCCATATTCTCCAGGAGCATGCCAGGAACAATCGGATACATGGCACCAGAGTACGGGTCGACAGGAAAAGCATCGCGAAAGAGCGACGTGTTCAGCTACGGGGTCATGCTCCTGGAGGTCTTCACGGGGAAGAAGCCAACCGACGCCATGTTCGTCGGAGAGCTGAGCTTGAGGGAGTGGGTCAACCGAGCGCTCCCGTCAAGGCTCGCCGACGTCGTACATCCTGGCATCTCTCTGTATGACGACACGGTGAGCAGCGATGATGCCCAAGGTGAATCAACCGGCAGCAGGAGCTGCTTAGCGCAGCTGCTGGATTTGGGGCTGCAGTGTACCAGAGACTTGCCTGAGGACAGGGTGACGATGAAGGATGTGACTGTGAAACTGCAGCGGATCAAGGAGGTATTACAAGCCTAG
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| Protein seq | WGLQNIVGLDLAGNALTGSLPEVENLKATTFMNLSSNRFSGNLPASLELFSTLTYLDLSYNSFSGTIPKSFANLSPLTTLNLSFNRLDGQIPNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLLKVVLIPSILATGIIAICLLFSIKFCTGKKLKGLPITMSLESNNNHRAISYYELVRATNNFNSDHLLGAGSFGKVFKGNLDDEQIVAIKVLNMDMERATMSFEVECRALRMARHRNLVRILTTCSNLDFKALVLQYMPNGSLDEWLLYSDRHCLGLMQRVSIMLDAALAMAYLHHEHFEVVLHCDLKPSNVLLDADMTACIADFGIARLLLGEDTSIFSRSMPGTIGYMAPEYGSTGKASRKSDVFSYGVMLLEVFTGKKPTDAMFVGELSLREWVNRALPSRLADVVHPGISLYDDTVSSDDAQGESTGSRSCLAQLLDLGLQCTRDLPEDRVTMKDVTVKLQRIKEVLQA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0694000 | RBH | 0.512809 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49910 | RBH | 0.346584 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0545400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029990 | RBH | 0.099823 | 1.658626 | 0.574514 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029600 | RBH | 0.000000 | 0.124209 | 0.146467 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029980 | RBH | 0.200251 | 0.000000 | 0.391245 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029200 | SBH | 0.0 | 0.029609 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028890 | RBH | 0.365616 | 2.909062 | 0.788778 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0476400 | RBH | 0.492484 | 0.879586 | 0.5321825 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028620 | SBH | 0.082367 | 0.178108 | 0.039281 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0466000 | RBH | 0.6021905 | 1.429669 | 1.6843255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028880 | SBH | 0.016680 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028780 | SBH | 0.187327 | 1.690751 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0029070 | RBH | 0.000000 | 0.713301 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029240 | RBH | 0.085185 | 0.423978 | 0.142664 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029040 | RBH | 0.018302 | 1.806314 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029480 | SBH | 0.0 | 1.178206 | 0.107514 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0029170 | SBH | 0.000000 | 4.007949 | 0.201346 |
