Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0536950 | OGI:01062380 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:19539370-19540140 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATCCCCTATATATACTCTTATAAGCTGTACGGGAAAGGGGTGACATTCCCATTGTGATTCCCCTACGTTTGTAATCATCTCCTCTATAGTGATTATTGCCGGTCGGCGCCCGTGGTTTTTTCCCGCAAGGGTTTTCCACGTAAAATTCGTGTCTCCGTTGTGCATCTATTTTCATAACATCCCCAATTGTCTTGCTTACATGCTGAGCAGGACGATCCACGGGTATACTATTTGCTATTGTGCTGTAGTAACTTCTTCCCTTTACAATTGCATCAAATCTCTTCTTTATTGCCTTGATTTTGTGAGCTGTCTTGAATTCGAAGACAACTGATTTTGGTTTTGTCCAGAAGTGTTTGACGATAACATTCTTGACACTAACAATATTTTCTTCATGTTTCTCAGCCTCAATACGGAACTCATGGACCAAATCTTCAGCATCGTAAGCAGCGTCTTTCAGTTTTTTGAGCCAATTAGACGACCGGTCATTCCTCATAGCTTTATCACCCACTGTTTGTAACCAATTGTTGATCTCCTCAACTAGATCCTGGAGTTCCTGAAGATCGTTGCTCACACCTGCCATAGAGCTAAACTCTTTGATCACCAGTGGAGCTAAATTTTTACCCACAATATTCAATATCCCAGATACTAACGAAGCTTCCATTCCACCCATGTATCTTTTGCTCGTAACCTGAAAATTAATTTGAAATAAGCCAATAACCTTTAGACAAAAATACAATATGAGCTGTGCTATTGGATTTTTTACGTACAT
More
|
||||||||||
| CDS seq | ATGTACGTAAAAAATCCAATAGCACAGCTCATATTGTATTTTTGTCTAAAGGTTATTGGCTTATTTCAAATTAATTTTCAGGTTACGAGCAAAAGATACATGGGTGGAATGGAAGCTTCGTTAGTATCTGGGATATTGAATATTGTGGGTAAAAATTTAGCTCCACTGGTGATCAAAGAGTTTAGCTCTATGGCAGGTGTGAGCAACGATCTTCAGGAACTCCAGGATCTAGTTGAGGAGATCAACAATTGGTTACAAACAGTGGGTGATAAAGCTATGAGGAATGACCGGTCGTCTAATTGGCTCAAAAAACTGAAAGACGCTGCTTACGATGCTGAAGATTTGGTCCATGAGTTCCGTATTGAGGCTGAGAAACATGAAGAAAATATTGTTAGTGTCAAGAATGTTATCGTCAAACACTTCTGGACAAAACCAAAATCAGTTGTCTTCGAATTCAAGACAGCTCACAAAATCAAGGCAATAAAGAAGAGATTTGATGCAATTGTAAAGGGAAGAAGTTACTACAGCACAATAGCAAATAGTATACCCGTGGATCGTCCTGCTCAGCATGTAAGCAAGACAATTGGGGATGTTATGAAAATAGATGCACAACGGAGACACGAATTTTACGTGGAAAACCCTTGCGGGAAAAAACCACGGGCGCCGACCGGCAATAATCACTATAGAGGAGATGATTACAAACGTAGGGGAATCACAATGGGAATGTCACCCCTTTCCCGTACAGCTTATAAGAGTATATATAGGGGATAA
More
|
||||||||||
| Protein seq | MYVKNPIAQLILYFCLKVIGLFQINFQVTSKRYMGGMEASLVSGILNIVGKNLAPLVIKEFSSMAGVSNDLQELQDLVEEINNWLQTVGDKAMRNDRSSNWLKKLKDAAYDAEDLVHEFRIEAEKHEENIVSVKNVIVKHFWTKPKSVVFEFKTAHKIKAIKKRFDAIVKGRSYYSTIANSIPVDRPAQHVSKTIGDVMKIDAQRRHEFYVENPCGKKPRAPTGNNHYRGDDYKRRGITMGMSPLSRTAYKSIYRG |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0536950 | Os01t0536950-00 | Chr01 | 19539370 | 19540140 | - | irgsp1_rep | ||
| CDS seq | ATGTACGTAAAAAATCCAATAGCACAGCTCATATTGTATTTTTGTCTAAAGGTTATTGGCTTATTTCAAATTAATTTTCAGGTTACGAGCAAAAGATACATGGGTGGAATGGAAGCTTCGTTAGTATCTGGGATATTGAATATTGTGGGTAAAAATTTAGCTCCACTGGTGATCAAAGAGTTTAGCTCTATGGCAGGTGTGAGCAACGATCTTCAGGAACTCCAGGATCTAGTTGAGGAGATCAACAATTGGTTACAAACAGTGGGTGATAAAGCTATGAGGAATGACCGGTCGTCTAATTGGCTCAAAAAACTGAAAGACGCTGCTTACGATGCTGAAGATTTGGTCCATGAGTTCCGTATTGAGGCTGAGAAACATGAAGAAAATATTGTTAGTGTCAAGAATGTTATCGTCAAACACTTCTGGACAAAACCAAAATCAGTTGTCTTCGAATTCAAGACAGCTCACAAAATCAAGGCAATAAAGAAGAGATTTGATGCAATTGTAAAGGGAAGAAGTTACTACAGCACAATAGCAAATAGTATACCCGTGGATCGTCCTGCTCAGCATGTAAGCAAGACAATTGGGGATGTTATGAAAATAGATGCACAACGGAGACACGAATTTTACGTGGAAAACCCTTGCGGGAAAAAACCACGGGCGCCGACCGGCAATAATCACTATAGAGGAGATGATTACAAACGTAGGGGAATCACAATGGGAATGTCACCCCTTTCCCGTACAGCTTATAAGAGTATATATAGGGGATAA
More
|
|||||||
| Protein seq | MYVKNPIAQLILYFCLKVIGLFQINFQVTSKRYMGGMEASLVSGILNIVGKNLAPLVIKEFSSMAGVSNDLQELQDLVEEINNWLQTVGDKAMRNDRSSNWLKKLKDAAYDAEDLVHEFRIEAEKHEENIVSVKNVIVKHFWTKPKSVVFEFKTAHKIKAIKKRFDAIVKGRSYYSTIANSIPVDRPAQHVSKTIGDVMKIDAQRRHEFYVENPCGKKPRAPTGNNHYRGDDYKRRGITMGMSPLSRTAYKSIYRG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0536950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g35300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0011950 | SBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0011610 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0011950 | SBH | 0.000000 | 0.743895 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0011450 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0011510 | SBH | 0.0 | 1.143787 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0332100 | RBH | 0 | 0.009849 | 0.0527155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019700 | SBH | 0.0 | 0.076727 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0330800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019710 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019610 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019900 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0011620 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0011450 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G020040 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019760 | SBH | 0.0 | 0.0 | 0.0 |
