Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g35300 | OGI:01062380 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:19539370-19540060 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATCCCCTATATATACTCTTATAAGCTGTACGGGAAAGGGGTGACATTCCCATTGTGATTCCCCTACGTTTGTAATCATCTCCTCTATAGTGATTATTGCCGGTCGGCGCCCGTGGTTTTTTCCCGCAAGGGTTTTCCACGTAAAATTCGTGTCTCCGTTGTGCATCTATTTTCATAACATCCCCAATTGTCTTGCTTACATGCTGAGCAGGACGATCCACGGGTATACTATTTGCTATTGTGCTGTAGTAACTTCTTCCCTTTACAATTGCATCAAATCTCTTCTTTATTGCCTTGATTTTGTGAGCTGTCTTGAATTCGAAGACAACTGATTTTGGTTTTGTCCAGAAGTGTTTGACGATAACATTCTTGACACTAACAATATTTTCTTCATGTTTCTCAGCCTCAATACGGAACTCATGGACCAAATCTTCAGCATCGTAAGCAGCGTCTTTCAGTTTTTTGAGCCAATTAGACGACCGGTCATTCCTCATAGCTTTATCACCCACTGTTTGTAACCAATTGTTGATCTCCTCAACTAGATCCTGGAGTTCCTGAAGATCGTTGCTCACACCTGCCATAGAGCTAAACTCTTTGATCACCAGTGGAGCTAAATTTTTACCCACAATATTCAATATCCCAGATACTAACGAAGCTTCCATTCCACCCATGTATCTTTTGCTCGTAACC
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| CDS seq | ATGGGTGGAATGGAAGCTTCGTTAGTATCTGGGATATTGAATATTGTGGGTAAAAATTTAGCTCCACTGGTGATCAAAGAGTTTAGCTCTATGGCAGGTGTGAGCAACGATCTTCAGGAACTCCAGGATCTAGTTGAGGAGATCAACAATTGGTTACAAACAGTGGGTGATAAAGCTATGAGGAATGACCGGTCGTCTAATTGGCTCAAAAAACTGAAAGACGCTGCTTACGATGCTGAAGATTTGGTCCATGAGTTCCGTATTGAGGCTGAGAAACATGAAGAAAATATTGTTAGTGTCAAGAATGTTATCGTCAAACACTTCTGGACAAAACCAAAATCAGTTGTCTTCGAATTCAAGACAGCTCACAAAATCAAGGCAATAAAGAAGAGATTTGATGCAATTGTAAAGGGAAGAAGTTACTACAGCACAATAGCAAATAGTATACCCGTGGATCGTCCTGCTCAGCATGTAAGCAAGACAATTGGGGATGTTATGAAAATAGATGCACAACGGAGACACGAATTTTACGTGGAAAACCCTTGCGGGAAAAAACCACGGGCGCCGACCGGCAATAATCACTATAGAGGAGATGATTACAAACGTAGGGGAATCACAATGGGAATGTCACCCCTTTCCCGTACAGCTTATAAGAGTATATATAGGGGATAA
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| Protein seq | MGGMEASLVSGILNIVGKNLAPLVIKEFSSMAGVSNDLQELQDLVEEINNWLQTVGDKAMRNDRSSNWLKKLKDAAYDAEDLVHEFRIEAEKHEENIVSVKNVIVKHFWTKPKSVVFEFKTAHKIKAIKKRFDAIVKGRSYYSTIANSIPVDRPAQHVSKTIGDVMKIDAQRRHEFYVENPCGKKPRAPTGNNHYRGDDYKRRGITMGMSPLSRTAYKSIYRG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g35300 | LOC_Os01g35300.1 | Chr01 | 19539370 | 19540060 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGTGGAATGGAAGCTTCGTTAGTATCTGGGATATTGAATATTGTGGGTAAAAATTTAGCTCCACTGGTGATCAAAGAGTTTAGCTCTATGGCAGGTGTGAGCAACGATCTTCAGGAACTCCAGGATCTAGTTGAGGAGATCAACAATTGGTTACAAACAGTGGGTGATAAAGCTATGAGGAATGACCGGTCGTCTAATTGGCTCAAAAAACTGAAAGACGCTGCTTACGATGCTGAAGATTTGGTCCATGAGTTCCGTATTGAGGCTGAGAAACATGAAGAAAATATTGTTAGTGTCAAGAATGTTATCGTCAAACACTTCTGGACAAAACCAAAATCAGTTGTCTTCGAATTCAAGACAGCTCACAAAATCAAGGCAATAAAGAAGAGATTTGATGCAATTGTAAAGGGAAGAAGTTACTACAGCACAATAGCAAATAGTATACCCGTGGATCGTCCTGCTCAGCATGTAAGCAAGACAATTGGGGATGTTATGAAAATAGATGCACAACGGAGACACGAATTTTACGTGGAAAACCCTTGCGGGAAAAAACCACGGGCGCCGACCGGCAATAATCACTATAGAGGAGATGATTACAAACGTAGGGGAATCACAATGGGAATGTCACCCCTTTCCCGTACAGCTTATAAGAGTATATATAGGGGATAA
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| Protein seq | MGGMEASLVSGILNIVGKNLAPLVIKEFSSMAGVSNDLQELQDLVEEINNWLQTVGDKAMRNDRSSNWLKKLKDAAYDAEDLVHEFRIEAEKHEENIVSVKNVIVKHFWTKPKSVVFEFKTAHKIKAIKKRFDAIVKGRSYYSTIANSIPVDRPAQHVSKTIGDVMKIDAQRRHEFYVENPCGKKPRAPTGNNHYRGDDYKRRGITMGMSPLSRTAYKSIYRG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0536950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0536950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0019620 | SBH | 0.072320 | 4.488703 | 0.880622 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0332100 | RBH | 0 | 0.009849 | 0.0527155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019700 | RBH | 0.0 | 0.076727 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0330800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019710 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019610 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019900 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G020040 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019760 | RBH | 0.0 | 0.0 | 0.0 |
