Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0366300 | OGI:01047190 | 6/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:14964573-14968307 | ||||||||
| Gene Symbol | Gnk2RLK-1 | ||||||||||
| DNA seq | GGACTTTTTCACGCGACCTGCCATGTCTGTGCTTCTGCTTCTCTTCTTGCCGCTCGCCGCCGCCCAACCATGGCAAGTATGCCAAGACAGCCGGGGCAAATACACATCAAACAGCACCTACCAAGCCAACATCCAATCGCTGTCGTCCACGCTCCCCGCGAAAGCCGCCGCGCCCAGCACCGGCCTCTTCGCCACCCGCGTCGCCGGAAATGCCCCAGACACCGTGTACGCCCTTGCCTTCTGCCGCGGGGACATCACCAACGCCTCCGCCTGCGCAGGCTGCGTGGCATCCGGTTTCCAGGACGCGCAGCAGCTGTGCCCGTTCAACAAGGCTGCCTCCCTGTACTACGATCTCTGCCTCCTCCGCTTCGCCGATGAAAACTTCCTCGCCACCAACAACAGCGATGTAGTCATGCTGATGAACTCACAGAACTTCACGGCGAGCGTCGGCTCGGTCCGCCTCCTCCTCTTCACGCTGCTGAACGCCACAGCCGAGTCGGCAGCGAGCAGCTCGAGGAGGTTCACCACCTCGCGGTTGGACGTCAGCTCCCTCCCCACGCTGTACTGCCTTATGCAGTGCACGCCTGACCTGACGGCCGGAGAGTGCGCGGCCTGCTTCGAGGATTTCCCGCGGTTGACGCTCCAGTACCTCGACGGTGCGCGAGGCGGAAGGATTCTCGCGACACGCTGCACCATGAGGTACGAGATCTACCCGTTCTACTCAGGTGACACGATGCTGCGTATCATCAACTTGGCAACCACGGTGCCCGAGATGAACACCACGGCACCAACTACTCCGGTCACCGTGTATCCGCAGCCAGCGGGGCCAGGTGGTGCGAGCGCGCCACCACCGCCGCAGCCAAACCCCGGCATCCCGGAACAGGCACAGCGCTCGCCCTGTCAGTCTTGCATGAATAGTGAATACTCTCTCCTTGCAACACGATTACAATTTTGGAATACGGCTCATGTCTTATTGTCATTAATTAGATCACAAGAGTAAGGTGTGGATCGTTGCTATTGTTGCTCCACTACTGGCAATTCTGTTTTGTTTCATGCTTTCCATTGTATGGATCAGAAGAGGTAGAAAAGGTTTGTGATCTACATAAGAAAATGTATTAGTAATATGTTGTAGTCTGTCATTTGCATGTTGGGTCATCGAGGTAGTTACTCCAAATTAATGATATATTTATTCATGTCCATTTAGGAGAGGTAAACATGCAGAACAATATTGCTGCAGTAAATAGGCTGGAAGAAGACGCACTTGTTTGGAGATTGGAAGAGAGGAGTTCAGAGTTCTCTCTTTTTGAATTTTCTGAGTTGCTGGAGGCTACAGACAACTTCGCAGCAGAGAACAGGCTTGGACAAGGAGGCTTTGGCCCTGTATACAAGGTAAATATTGTTAGCATTGACAAAGGGGGACCGTAGATGACTATAAGATTGGAAAGATTCAATGCTATCTTGGATACAGTCATGATTCAATACAGAGCAAAACTACAAGAACAGAGTGAATCAGTTTGTAATCTCATATAGGTTAGCTGAAAATAATTCAAAACCACTTATCAAGTAAGGAAATCATCCGGTTTTCTTTTTCCGTGAAATTTTTTTGACGCAATTTTTCCGTGAAATTCATCCTGGCTATACCTTTTCTTCCACAGGCATAGTATATATTATAAACACGAAGTTTAGATAAGTGTTGCCAGAATTCCTCTAATAAAATCCGACTAGACCAGACTTGTCCCGAAGTTCAAGAATTAGGCCCATCAAATAATTGAGGTTTCACAGCCAATTTTATTTCTAATTCTTTACAGGTACCAAGATGTACCACTAATTATACCTTCAGAATTAACATCGAGTTCTTTTAATCCCATGTATGGTGACTCTCAATTTACAGTCTTACTCATAGGTACCAAATCGGTAAGAATGTAATATAATATTTCTTGGCAACTTACATGGAAATTTCATTTTGTGCGACGTTGTTTGTCATATTTCCAGGGTCAATTGCATGATGGGGTGGAAGTTGCAGTTAAAAGGCTTGCTTCACAATCAGGACAGGGTTTCACTGAGTTCAAAAATGAAGTTGAACTTATAGCTAAACTACAACACACAAATCTTGTTAGGCTGCTGGGATGCTGCATTCAGGGAGAGGAGAAAATATTGGTGTATGAATATTTGCCAAACAAAAGCTTAGATTTCTTTATCTTTGGTATGCACTTGTTCTTTCAAGTTTAACTCAATCACGTGACGTTTCTAATTCTAACTCATTAGTATTGTACTTTGGTCTCACAAGTTTTATGTATAAATGAGATGCAGATGTCGACAAAACCAGTTTAATTGACTGGAATAAACGTTGCGGAATAATTGAAGGGATAGCTCAAGGTCTTCTTTACTTGCACAAGCACTCTCGGCTCCGTGTCATACACAGAGACCTTAAAGCCAGCAACATTCTTTTGGACCAGGACATGAATCCTAAAATATCTGATTTTGGGCTAGCAAAAATTTTTAGCTCTAATAATACCGAAGGAAACACAAAGAGGGTGGTGGGAACATAGTAAGCATATATGTGTTTATAGATATATTTTAGCACTTAATGGTTGTAGTTACATGATTCAGCAATTTGATTTGATTTCTTTTCCCTCTTGTTTGCATATCATTTCAGTGGTTACATGTCACCAGAGTATGCCTCTGAAGGTATCTACTCGATCAAATCTGATGTGTTTAGCTTTGGTGTTCTTCTTCTTGAGATACTTAGCGGAAAAAGGAATTCTGGTTTCCACCAATACGGAGATTTTCTTAACCTCCTAGGCTATGTGAGTATATTCATCTTTTCCCTCTTTTTCAGGAAAGACATTTGAGTGTTTTATGCATGCACGCACACATAAATACACACGTTCATCAATAAATTAAGGATCTTTTCTTCAGGCATGGCATATGTGGGAAGAAGGGAGATGGCTTGATATAATAGGAGCGTCAATTCCTCAGACGATCCCTACAGAAGGGTTGAGGAAGTACATCAACATTGCGCTTATGTGCGTGCAAGAGAACGCAGATGATCGACCGACCATGTCAGATGTCGTAGCGATGCTAAGTAGCGAGAGTGCGGTTCTTCCTGAACCTAAGCACCCGGCATACTACAACCTAAGGGTATCAAAAGTACAGGGATCTACTAATGTTGTTCAATCAATCAGTGTGAATGATGTAACTATCACTTCCAACCCAGAGGGTAGATAGCTGGTACCTTTGGGTCTCATTTCCAGCTCTCCATATCTCTCGTATAACAGCATCAAGGCATCAATTGTAATAATGAAGGTATGTGGATGCAGTTGTCGTGGCAGCCGATCTCATCCAGTCTTATTTGCAGACAGTGGCGGATCCAGAAAATCGATTCGTTGGTGTTATAACATGTCTATCGGTGTCATAATATGGTAATTATGCTTAGATCATGGTGTTATGACATATGGATAAGCAGTTTTGCTATATGTTTGCCGAAAGTCGTCGGTGTCGCCTGACACCGGTCCTAGTAATGTAGATCCGCCCCTGTTTGCAGAGTTGTTTTCATAGTCAAGTTTCCCTTCCCCTTTATAAGGATAGTTGCTTTTAAGATATTTTGTTTTGAGGCGATGTATCAGGGATTTACTTAATAACTAGAAAGGTAGCCCGCGCACATGCGCGGGCAGCTTCTTATGTAATGTGAGTGAAATTTTATTATGAATATTTATGTGCAGGGTTTTTTTATTG
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| CDS seq | ATGTCTGTGCTTCTGCTTCTCTTCTTGCCGCTCGCCGCCGCCCAACCATGGCAAGTATGCCAAGACAGCCGGGGCAAATACACATCAAACAGCACCTACCAAGCCAACATCCAATCGCTGTCGTCCACGCTCCCCGCGAAAGCCGCCGCGCCCAGCACCGGCCTCTTCGCCACCCGCGTCGCCGGAAATGCCCCAGACACCGTGTACGCCCTTGCCTTCTGCCGCGGGGACATCACCAACGCCTCCGCCTGCGCAGGCTGCGTGGCATCCGGTTTCCAGGACGCGCAGCAGCTGTGCCCGTTCAACAAGGCTGCCTCCCTGTACTACGATCTCTGCCTCCTCCGCTTCGCCGATGAAAACTTCCTCGCCACCAACAACAGCGATGTAGTCATGCTGATGAACTCACAGAACTTCACGGCGAGCGTCGGCTCGGTCCGCCTCCTCCTCTTCACGCTGCTGAACGCCACAGCCGAGTCGGCAGCGAGCAGCTCGAGGAGGTTCACCACCTCGCGGTTGGACGTCAGCTCCCTCCCCACGCTGTACTGCCTTATGCAGTGCACGCCTGACCTGACGGCCGGAGAGTGCGCGGCCTGCTTCGAGGATTTCCCGCGGTTGACGCTCCAGTACCTCGACGGTGCGCGAGGCGGAAGGATTCTCGCGACACGCTGCACCATGAGGTACGAGATCTACCCGTTCTACTCAGGTGACACGATGCTGCGTATCATCAACTTGGCAACCACGGTGCCCGAGATGAACACCACGGCACCAACTACTCCGGTCACCGTGTATCCGCAGCCAGCGGGGCCAGGTGGTGCGAGCGCGCCACCACCGCCGCAGCCAAACCCCGGCATCCCGGAACAGGCACAGCGCTCGCCCTATCACAAGAGTAAGGTGTGGATCGTTGCTATTGTTGCTCCACTACTGGCAATTCTGTTTTGTTTCATGCTTTCCATTGTATGGATCAGAAGAGGTAGAAAAGGAGAGGTAAACATGCAGAACAATATTGCTGCAGTAAATAGGCTGGAAGAAGACGCACTTGTTTGGAGATTGGAAGAGAGGAGTTCAGAGTTCTCTCTTTTTGAATTTTCTGAGTTGCTGGAGGCTACAGACAACTTCGCAGCAGAGAACAGGCTTGGACAAGGAGGCTTTGGCCCTGTATACAAGGGTCAATTGCATGATGGGGTGGAAGTTGCAGTTAAAAGGCTTGCTTCACAATCAGGACAGGGTTTCACTGAGTTCAAAAATGAAGTTGAACTTATAGCTAAACTACAACACACAAATCTTGTTAGGCTGCTGGGATGCTGCATTCAGGGAGAGGAGAAAATATTGGTGTATGAATATTTGCCAAACAAAAGCTTAGATTTCTTTATCTTTGATGTCGACAAAACCAGTTTAATTGACTGGAATAAACGTTGCGGAATAATTGAAGGGATAGCTCAAGGTCTTCTTTACTTGCACAAGCACTCTCGGCTCCGTGTCATACACAGAGACCTTAAAGCCAGCAACATTCTTTTGGACCAGGACATGAATCCTAAAATATCTGATTTTGGGCTAGCAAAAATTTTTAGCTCTAATAATACCGAAGGAAACACAAAGAGGGTGGTGGGAACATATGGTTACATGTCACCAGAGTATGCCTCTGAAGGTATCTACTCGATCAAATCTGATGTGTTTAGCTTTGGTGTTCTTCTTCTTGAGATACTTAGCGGAAAAAGGAATTCTGGTTTCCACCAATACGGAGATTTTCTTAACCTCCTAGGCTATGCATGGCATATGTGGGAAGAAGGGAGATGGCTTGATATAATAGGAGCGTCAATTCCTCAGACGATCCCTACAGAAGGGTTGAGGAAGTACATCAACATTGCGCTTATGTGCGTGCAAGAGAACGCAGATGATCGACCGACCATGTCAGATGTCGTAGCGATGCTAAGTAGCGAGAGTGCGGTTCTTCCTGAACCTAAGCACCCGGCATACTACAACCTAAGGGTATCAAAAGTACAGGGATCTACTAATGTTGTTCAATCAATCAGTGTGAATGATGTAACTATCACTTCCAACCCAGAGGGTAGATAG
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| Protein seq | MSVLLLLFLPLAAAQPWQVCQDSRGKYTSNSTYQANIQSLSSTLPAKAAAPSTGLFATRVAGNAPDTVYALAFCRGDITNASACAGCVASGFQDAQQLCPFNKAASLYYDLCLLRFADENFLATNNSDVVMLMNSQNFTASVGSVRLLLFTLLNATAESAASSSRRFTTSRLDVSSLPTLYCLMQCTPDLTAGECAACFEDFPRLTLQYLDGARGGRILATRCTMRYEIYPFYSGDTMLRIINLATTVPEMNTTAPTTPVTVYPQPAGPGGASAPPPPQPNPGIPEQAQRSPYHKSKVWIVAIVAPLLAILFCFMLSIVWIRRGRKGEVNMQNNIAAVNRLEEDALVWRLEERSSEFSLFEFSELLEATDNFAAENRLGQGGFGPVYKGQLHDGVEVAVKRLASQSGQGFTEFKNEVELIAKLQHTNLVRLLGCCIQGEEKILVYEYLPNKSLDFFIFDVDKTSLIDWNKRCGIIEGIAQGLLYLHKHSRLRVIHRDLKASNILLDQDMNPKISDFGLAKIFSSNNTEGNTKRVVGTYGYMSPEYASEGIYSIKSDVFSFGVLLLEILSGKRNSGFHQYGDFLNLLGYAWHMWEEGRWLDIIGASIPQTIPTEGLRKYINIALMCVQENADDRPTMSDVVAMLSSESAVLPEPKHPAYYNLRVSKVQGSTNVVQSISVNDVTITSNPEGR |
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| Function | Cysteine-rich receptor-like protein kinase 25 [UniProtKB/Swiss-Prot:Q9M0X5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0366300 | Os01t0366300-01 | Chr01 | 14964573 | 14968307 | + | irgsp1_rep | ||
| CDS seq | ATGTCTGTGCTTCTGCTTCTCTTCTTGCCGCTCGCCGCCGCCCAACCATGGCAAGTATGCCAAGACAGCCGGGGCAAATACACATCAAACAGCACCTACCAAGCCAACATCCAATCGCTGTCGTCCACGCTCCCCGCGAAAGCCGCCGCGCCCAGCACCGGCCTCTTCGCCACCCGCGTCGCCGGAAATGCCCCAGACACCGTGTACGCCCTTGCCTTCTGCCGCGGGGACATCACCAACGCCTCCGCCTGCGCAGGCTGCGTGGCATCCGGTTTCCAGGACGCGCAGCAGCTGTGCCCGTTCAACAAGGCTGCCTCCCTGTACTACGATCTCTGCCTCCTCCGCTTCGCCGATGAAAACTTCCTCGCCACCAACAACAGCGATGTAGTCATGCTGATGAACTCACAGAACTTCACGGCGAGCGTCGGCTCGGTCCGCCTCCTCCTCTTCACGCTGCTGAACGCCACAGCCGAGTCGGCAGCGAGCAGCTCGAGGAGGTTCACCACCTCGCGGTTGGACGTCAGCTCCCTCCCCACGCTGTACTGCCTTATGCAGTGCACGCCTGACCTGACGGCCGGAGAGTGCGCGGCCTGCTTCGAGGATTTCCCGCGGTTGACGCTCCAGTACCTCGACGGTGCGCGAGGCGGAAGGATTCTCGCGACACGCTGCACCATGAGGTACGAGATCTACCCGTTCTACTCAGGTGACACGATGCTGCGTATCATCAACTTGGCAACCACGGTGCCCGAGATGAACACCACGGCACCAACTACTCCGGTCACCGTGTATCCGCAGCCAGCGGGGCCAGGTGGTGCGAGCGCGCCACCACCGCCGCAGCCAAACCCCGGCATCCCGGAACAGGCACAGCGCTCGCCCTATCACAAGAGTAAGGTGTGGATCGTTGCTATTGTTGCTCCACTACTGGCAATTCTGTTTTGTTTCATGCTTTCCATTGTATGGATCAGAAGAGGTAGAAAAGGAGAGGTAAACATGCAGAACAATATTGCTGCAGTAAATAGGCTGGAAGAAGACGCACTTGTTTGGAGATTGGAAGAGAGGAGTTCAGAGTTCTCTCTTTTTGAATTTTCTGAGTTGCTGGAGGCTACAGACAACTTCGCAGCAGAGAACAGGCTTGGACAAGGAGGCTTTGGCCCTGTATACAAGGGTCAATTGCATGATGGGGTGGAAGTTGCAGTTAAAAGGCTTGCTTCACAATCAGGACAGGGTTTCACTGAGTTCAAAAATGAAGTTGAACTTATAGCTAAACTACAACACACAAATCTTGTTAGGCTGCTGGGATGCTGCATTCAGGGAGAGGAGAAAATATTGGTGTATGAATATTTGCCAAACAAAAGCTTAGATTTCTTTATCTTTGATGTCGACAAAACCAGTTTAATTGACTGGAATAAACGTTGCGGAATAATTGAAGGGATAGCTCAAGGTCTTCTTTACTTGCACAAGCACTCTCGGCTCCGTGTCATACACAGAGACCTTAAAGCCAGCAACATTCTTTTGGACCAGGACATGAATCCTAAAATATCTGATTTTGGGCTAGCAAAAATTTTTAGCTCTAATAATACCGAAGGAAACACAAAGAGGGTGGTGGGAACATATGGTTACATGTCACCAGAGTATGCCTCTGAAGGTATCTACTCGATCAAATCTGATGTGTTTAGCTTTGGTGTTCTTCTTCTTGAGATACTTAGCGGAAAAAGGAATTCTGGTTTCCACCAATACGGAGATTTTCTTAACCTCCTAGGCTATGCATGGCATATGTGGGAAGAAGGGAGATGGCTTGATATAATAGGAGCGTCAATTCCTCAGACGATCCCTACAGAAGGGTTGAGGAAGTACATCAACATTGCGCTTATGTGCGTGCAAGAGAACGCAGATGATCGACCGACCATGTCAGATGTCGTAGCGATGCTAAGTAGCGAGAGTGCGGTTCTTCCTGAACCTAAGCACCCGGCATACTACAACCTAAGGGTATCAAAAGTACAGGGATCTACTAATGTTGTTCAATCAATCAGTGTGAATGATGTAACTATCACTTCCAACCCAGAGGGTAGATAG
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| Protein seq | MSVLLLLFLPLAAAQPWQVCQDSRGKYTSNSTYQANIQSLSSTLPAKAAAPSTGLFATRVAGNAPDTVYALAFCRGDITNASACAGCVASGFQDAQQLCPFNKAASLYYDLCLLRFADENFLATNNSDVVMLMNSQNFTASVGSVRLLLFTLLNATAESAASSSRRFTTSRLDVSSLPTLYCLMQCTPDLTAGECAACFEDFPRLTLQYLDGARGGRILATRCTMRYEIYPFYSGDTMLRIINLATTVPEMNTTAPTTPVTVYPQPAGPGGASAPPPPQPNPGIPEQAQRSPYHKSKVWIVAIVAPLLAILFCFMLSIVWIRRGRKGEVNMQNNIAAVNRLEEDALVWRLEERSSEFSLFEFSELLEATDNFAAENRLGQGGFGPVYKGQLHDGVEVAVKRLASQSGQGFTEFKNEVELIAKLQHTNLVRLLGCCIQGEEKILVYEYLPNKSLDFFIFDVDKTSLIDWNKRCGIIEGIAQGLLYLHKHSRLRVIHRDLKASNILLDQDMNPKISDFGLAKIFSSNNTEGNTKRVVGTYGYMSPEYASEGIYSIKSDVFSFGVLLLEILSGKRNSGFHQYGDFLNLLGYAWHMWEEGRWLDIIGASIPQTIPTEGLRKYINIALMCVQENADDRPTMSDVVAMLSSESAVLPEPKHPAYYNLRVSKVQGSTNVVQSISVNDVTITSNPEGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0366300 | RBH | 0.000000 | 0.000000 | 0.677359 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g26390 | RBH | 0.000000 | 0.064719 | 0.277096 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0365000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017090 | RBH | 0.173872 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016750 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017020 | RBH | 0.0 | 0.486813 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019690 | SBH | 0.114565 | 0.059752 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0019590 | SBH | 4.760364 | 0.000000 | 6.508159 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0270200 | SBH | 0.991466 | 4.50573 | 1.6117055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002580 | SBH | 0.105404 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0252000 | SBH | 0.0070215 | 0.0277875 | 0.163181 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019660 | RBH | 0.0 | 0.172190 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019570 | SBH | 0.460221 | 9.503056 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001150 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019590 | SBH | 0.287297 | 0.613827 | 0.377016 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016740 | RBH | 0.0 | 0.0 | 0.242224 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019710 | SBH | 0.142467 | 5.528184 | 1.714579 |
