Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g26390 | OGI:01047190 | 6/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:14964573-14968307 | ||||||||
| Gene Symbol | Gnk2RLK-1 | ||||||||||
| DNA seq | GGACTTTTTCACGCGACCTGCCATGTCTGTGCTTCTGCTTCTCTTCTTGCCGCTCGCCGCCGCCCAACCATGGCAAGTATGCCAAGACAGCCGGGGCAAATACACATCAAACAGCACCTACCAAGCCAACATCCAATCGCTGTCGTCCACGCTCCCCGCGAAAGCCGCCGCGCCCAGCACCGGCCTCTTCGCCACCCGCGTCGCCGGAAATGCCCCAGACACCGTGTACGCCCTTGCCTTCTGCCGCGGGGACATCACCAACGCCTCCGCCTGCGCAGGCTGCGTGGCATCCGGTTTCCAGGACGCGCAGCAGCTGTGCCCGTTCAACAAGGCTGCCTCCCTGTACTACGATCTCTGCCTCCTCCGCTTCGCCGATGAAAACTTCCTCGCCACCAACAACAGCGATGTAGTCATGCTGATGAACTCACAGAACTTCACGGCGAGCGTCGGCTCGGTCCGCCTCCTCCTCTTCACGCTGCTGAACGCCACAGCCGAGTCGGCAGCGAGCAGCTCGAGGAGGTTCACCACCTCGCGGTTGGACGTCAGCTCCCTCCCCACGCTGTACTGCCTTATGCAGTGCACGCCTGACCTGACGGCCGGAGAGTGCGCGGCCTGCTTCGAGGATTTCCCGCGGTTGACGCTCCAGTACCTCGACGGTGCGCGAGGCGGAAGGATTCTCGCGACACGCTGCACCATGAGGTACGAGATCTACCCGTTCTACTCAGGTGACACGATGCTGCGTATCATCAACTTGGCAACCACGGTGCCCGAGATGAACACCACGGCACCAACTACTCCGGTCACCGTGTATCCGCAGCCAGCGGGGCCAGGTGGTGCGAGCGCGCCACCACCGCCGCAGCCAAACCCCGGCATCCCGGAACAGGCACAGCGCTCGCCCTGTCAGTCTTGCATGAATAGTGAATACTCTCTCCTTGCAACACGATTACAATTTTGGAATACGGCTCATGTCTTATTGTCATTAATTAGATCACAAGAGTAAGGTGTGGATCGTTGCTATTGTTGCTCCACTACTGGCAATTCTGTTTTGTTTCATGCTTTCCATTGTATGGATCAGAAGAGGTAGAAAAGGTTTGTGATCTACATAAGAAAATGTATTAGTAATATGTTGTAGTCTGTCATTTGCATGTTGGGTCATCGAGGTAGTTACTCCAAATTAATGATATATTTATTCATGTCCATTTAGGAGAGGTAAACATGCAGAACAATATTGCTGCAGTAAATAGGCTGGAAGAAGACGCACTTGTTTGGAGATTGGAAGAGAGGAGTTCAGAGTTCTCTCTTTTTGAATTTTCTGAGTTGCTGGAGGCTACAGACAACTTCGCAGCAGAGAACAGGCTTGGACAAGGAGGCTTTGGCCCTGTATACAAGGTAAATATTGTTAGCATTGACAAAGGGGGACCGTAGATGACTATAAGATTGGAAAGATTCAATGCTATCTTGGATACAGTCATGATTCAATACAGAGCAAAACTACAAGAACAGAGTGAATCAGTTTGTAATCTCATATAGGTTAGCTGAAAATAATTCAAAACCACTTATCAAGTAAGGAAATCATCCGGTTTTCTTTTTCCGTGAAATTTTTTTGACGCAATTTTTCCGTGAAATTCATCCTGGCTATACCTTTTCTTCCACAGGCATAGTATATATTATAAACACGAAGTTTAGATAAGTGTTGCCAGAATTCCTCTAATAAAATCCGACTAGACCAGACTTGTCCCGAAGTTCAAGAATTAGGCCCATCAAATAATTGAGGTTTCACAGCCAATTTTATTTCTAATTCTTTACAGGTACCAAGATGTACCACTAATTATACCTTCAGAATTAACATCGAGTTCTTTTAATCCCATGTATGGTGACTCTCAATTTACAGTCTTACTCATAGGTACCAAATCGGTAAGAATGTAATATAATATTTCTTGGCAACTTACATGGAAATTTCATTTTGTGCGACGTTGTTTGTCATATTTCCAGGGTCAATTGCATGATGGGGTGGAAGTTGCAGTTAAAAGGCTTGCTTCACAATCAGGACAGGGTTTCACTGAGTTCAAAAATGAAGTTGAACTTATAGCTAAACTACAACACACAAATCTTGTTAGGCTGCTGGGATGCTGCATTCAGGGAGAGGAGAAAATATTGGTGTATGAATATTTGCCAAACAAAAGCTTAGATTTCTTTATCTTTGGTATGCACTTGTTCTTTCAAGTTTAACTCAATCACGTGACGTTTCTAATTCTAACTCATTAGTATTGTACTTTGGTCTCACAAGTTTTATGTATAAATGAGATGCAGATGTCGACAAAACCAGTTTAATTGACTGGAATAAACGTTGCGGAATAATTGAAGGGATAGCTCAAGGTCTTCTTTACTTGCACAAGCACTCTCGGCTCCGTGTCATACACAGAGACCTTAAAGCCAGCAACATTCTTTTGGACCAGGACATGAATCCTAAAATATCTGATTTTGGGCTAGCAAAAATTTTTAGCTCTAATAATACCGAAGGAAACACAAAGAGGGTGGTGGGAACATAGTAAGCATATATGTGTTTATAGATATATTTTAGCACTTAATGGTTGTAGTTACATGATTCAGCAATTTGATTTGATTTCTTTTCCCTCTTGTTTGCATATCATTTCAGTGGTTACATGTCACCAGAGTATGCCTCTGAAGGTATCTACTCGATCAAATCTGATGTGTTTAGCTTTGGTGTTCTTCTTCTTGAGATACTTAGCGGAAAAAGGAATTCTGGTTTCCACCAATACGGAGATTTTCTTAACCTCCTAGGCTATGTGAGTATATTCATCTTTTCCCTCTTTTTCAGGAAAGACATTTGAGTGTTTTATGCATGCACGCACACATAAATACACACGTTCATCAATAAATTAAGGATCTTTTCTTCAGGCATGGCATATGTGGGAAGAAGGGAGATGGCTTGATATAATAGGAGCGTCAATTCCTCAGACGATCCCTACAGAAGGGTTGAGGAAGTACATCAACATTGCGCTTATGTGCGTGCAAGAGAACGCAGATGATCGACCGACCATGTCAGATGTCGTAGCGATGCTAAGTAGCGAGAGTGCGGTTCTTCCTGAACCTAAGCACCCGGCATACTACAACCTAAGGGTATCAAAAGTACAGGGATCTACTAATGTTGTTCAATCAATCAGTGTGAATGATGTAACTATCACTTCCAACCCAGAGGGTAGATAGCTGGTACCTTTGGGTCTCATTTCCAGCTCTCCATATCTCTCGTATAACAGCATCAAGGCATCAATTGTAATAATGAAGGTATGTGGATGCAGTTGTCGTGGCAGCCGATCTCATCCAGTCTTATTTGCAGACAGTGGCGGATCCAGAAAATCGATTCGTTGGTGTTATAACATGTCTATCGGTGTCATAATATGGTAATTATGCTTAGATCATGGTGTTATGACATATGGATAAGCAGTTTTGCTATATGTTTGCCGAAAGTCGTCGGTGTCGCCTGACACCGGTCCTAGTAATGTAGATCCGCCCCTGTTTGCAGAGTTGTTTTCATAGTCAAGTTTCCCTTCCCCTTTATAAGGATAGTTGCTTTTAAGATATTTTGTTTTGAGGCGATGTATCAGGGATTTACTTAATAACTAGAAAGGTAGCCCGCGCACATGCGCGGGCAGCTTCTTATGTAATGTGAGTGAAATTTTATTATGAATATTTATGTGCAGGGTTTTTTTATTG
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| CDS seq | ATGTCTGTGCTTCTGCTTCTCTTCTTGCCGCTCGCCGCCGCCCAACCATGGCAAGTATGCCAAGACAGCCGGGGCAAATACACATCAAACAGCACCTACCAAGCCAACATCCAATCGCTGTCGTCCACGCTCCCCGCGAAAGCCGCCGCGCCCAGCACCGGCCTCTTCGCCACCCGCGTCGCCGGAAATGCCCCAGACACCGTGTACGCCCTTGCCTTCTGCCGCGGGGACATCACCAACGCCTCCGCCTGCGCAGGCTGCGTGGCATCCGGTTTCCAGGACGCGCAGCAGCTGTGCCCGTTCAACAAGGCTGCCTCCCTGTACTACGATCTCTGCCTCCTCCGCTTCGCCGATGAAAACTTCCTCGCCACCAACAACAGCGATGTAGTCATGCTGATGAACTCACAGAACTTCACGGCGAGCGTCGGCTCGGTCCGCCTCCTCCTCTTCACGCTGCTGAACGCCACAGCCGAGTCGGCAGCGAGCAGCTCGAGGAGGTTCACCACCTCGCGGTTGGACGTCAGCTCCCTCCCCACGCTGTACTGCCTTATGCAGTGCACGCCTGACCTGACGGCCGGAGAGTGCGCGGCCTGCTTCGAGGATTTCCCGCGGTTGACGCTCCAGTACCTCGACGGTGCGCGAGGCGGAAGGATTCTCGCGACACGCTGCACCATGAGGTACGAGATCTACCCGTTCTACTCAGGTGACACGATGCTGCGTATCATCAACTTGGCAACCACGGTGCCCGAGATGAACACCACGGCACCAACTACTCCGGTCACCGTGTATCCGCAGCCAGCGGGGCCAGGTGGTGCGAGCGCGCCACCACCGCCGCAGCCAAACCCCGGCATCCCGGAACAGGCACAGCGCTCGCCCTATCACAAGAGTAAGGTGTGGATCGTTGCTATTGTTGCTCCACTACTGGCAATTCTGTTTTGTTTCATGCTTTCCATTGTATGGATCAGAAGAGGTAGAAAAGGAGAGGTAAACATGCAGAACAATATTGCTGCAGTAAATAGGCTGGAAGAAGACGCACTTGTTTGGAGATTGGAAGAGAGGAGTTCAGAGTTCTCTCTTTTTGAATTTTCTGAGTTGCTGGAGGCTACAGACAACTTCGCAGCAGAGAACAGGCTTGGACAAGGAGGCTTTGGCCCTGTATACAAGGGTCAATTGCATGATGGGGTGGAAGTTGCAGTTAAAAGGCTTGCTTCACAATCAGGACAGGGTTTCACTGAGTTCAAAAATGAAGTTGAACTTATAGCTAAACTACAACACACAAATCTTGTTAGGCTGCTGGGATGCTGCATTCAGGGAGAGGAGAAAATATTGGTGTATGAATATTTGCCAAACAAAAGCTTAGATTTCTTTATCTTTGATGTCGACAAAACCAGTTTAATTGACTGGAATAAACGTTGCGGAATAATTGAAGGGATAGCTCAAGGTCTTCTTTACTTGCACAAGCACTCTCGGCTCCGTGTCATACACAGAGACCTTAAAGCCAGCAACATTCTTTTGGACCAGGACATGAATCCTAAAATATCTGATTTTGGGCTAGCAAAAATTTTTAGCTCTAATAATACCGAAGGAAACACAAAGAGGGTGGTGGGAACATATGGTTACATGTCACCAGAGTATGCCTCTGAAGGTATCTACTCGATCAAATCTGATGTGTTTAGCTTTGGTGTTCTTCTTCTTGAGATACTTAGCGGAAAAAGGAATTCTGGTTTCCACCAATACGGAGATTTTCTTAACCTCCTAGGCTATGCATGGCATATGTGGGAAGAAGGGAGATGGCTTGATATAATAGGAGCGTCAATTCCTCAGACGATCCCTACAGAAGGGTTGAGGAAGTACATCAACATTGCGCTTATGTGCGTGCAAGAGAACGCAGATGATCGACCGACCATGTCAGATGTCGTAGCGATGCTAAGTAGCGAGAGTGCGGTTCTTCCTGAACCTAAGCACCCGGCATACTACAACCTAAGGGTATCAAAAGTACAGGGATCTACTAATGTTGTTCAATCAATCAGTGTGAATGATGTAACTATCACTTCCAACCCAGAGGGTAGATAG
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| Protein seq | MSVLLLLFLPLAAAQPWQVCQDSRGKYTSNSTYQANIQSLSSTLPAKAAAPSTGLFATRVAGNAPDTVYALAFCRGDITNASACAGCVASGFQDAQQLCPFNKAASLYYDLCLLRFADENFLATNNSDVVMLMNSQNFTASVGSVRLLLFTLLNATAESAASSSRRFTTSRLDVSSLPTLYCLMQCTPDLTAGECAACFEDFPRLTLQYLDGARGGRILATRCTMRYEIYPFYSGDTMLRIINLATTVPEMNTTAPTTPVTVYPQPAGPGGASAPPPPQPNPGIPEQAQRSPYHKSKVWIVAIVAPLLAILFCFMLSIVWIRRGRKGEVNMQNNIAAVNRLEEDALVWRLEERSSEFSLFEFSELLEATDNFAAENRLGQGGFGPVYKGQLHDGVEVAVKRLASQSGQGFTEFKNEVELIAKLQHTNLVRLLGCCIQGEEKILVYEYLPNKSLDFFIFDVDKTSLIDWNKRCGIIEGIAQGLLYLHKHSRLRVIHRDLKASNILLDQDMNPKISDFGLAKIFSSNNTEGNTKRVVGTYGYMSPEYASEGIYSIKSDVFSFGVLLLEILSGKRNSGFHQYGDFLNLLGYAWHMWEEGRWLDIIGASIPQTIPTEGLRKYINIALMCVQENADDRPTMSDVVAMLSSESAVLPEPKHPAYYNLRVSKVQGSTNVVQSISVNDVTITSNPEGR |
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| Function | Cysteine-rich receptor-like protein kinase 25 [UniProtKB/Swiss-Prot:Q9M0X5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g26390 | LOC_Os01g26390.1 | Chr01 | 14964573 | 14968307 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCTGTGCTTCTGCTTCTCTTCTTGCCGCTCGCCGCCGCCCAACCATGGCAAGTATGCCAAGACAGCCGGGGCAAATACACATCAAACAGCACCTACCAAGCCAACATCCAATCGCTGTCGTCCACGCTCCCCGCGAAAGCCGCCGCGCCCAGCACCGGCCTCTTCGCCACCCGCGTCGCCGGAAATGCCCCAGACACCGTGTACGCCCTTGCCTTCTGCCGCGGGGACATCACCAACGCCTCCGCCTGCGCAGGCTGCGTGGCATCCGGTTTCCAGGACGCGCAGCAGCTGTGCCCGTTCAACAAGGCTGCCTCCCTGTACTACGATCTCTGCCTCCTCCGCTTCGCCGATGAAAACTTCCTCGCCACCAACAACAGCGATGTAGTCATGCTGATGAACTCACAGAACTTCACGGCGAGCGTCGGCTCGGTCCGCCTCCTCCTCTTCACGCTGCTGAACGCCACAGCCGAGTCGGCAGCGAGCAGCTCGAGGAGGTTCACCACCTCGCGGTTGGACGTCAGCTCCCTCCCCACGCTGTACTGCCTTATGCAGTGCACGCCTGACCTGACGGCCGGAGAGTGCGCGGCCTGCTTCGAGGATTTCCCGCGGTTGACGCTCCAGTACCTCGACGGTGCGCGAGGCGGAAGGATTCTCGCGACACGCTGCACCATGAGGTACGAGATCTACCCGTTCTACTCAGGTGACACGATGCTGCGTATCATCAACTTGGCAACCACGGTGCCCGAGATGAACACCACGGCACCAACTACTCCGGTCACCGTGTATCCGCAGCCAGCGGGGCCAGGTGGTGCGAGCGCGCCACCACCGCCGCAGCCAAACCCCGGCATCCCGGAACAGGCACAGCGCTCGCCCTATCACAAGAGTAAGGTGTGGATCGTTGCTATTGTTGCTCCACTACTGGCAATTCTGTTTTGTTTCATGCTTTCCATTGTATGGATCAGAAGAGGTAGAAAAGGAGAGGTAAACATGCAGAACAATATTGCTGCAGTAAATAGGCTGGAAGAAGACGCACTTGTTTGGAGATTGGAAGAGAGGAGTTCAGAGTTCTCTCTTTTTGAATTTTCTGAGTTGCTGGAGGCTACAGACAACTTCGCAGCAGAGAACAGGCTTGGACAAGGAGGCTTTGGCCCTGTATACAAGGGTCAATTGCATGATGGGGTGGAAGTTGCAGTTAAAAGGCTTGCTTCACAATCAGGACAGGGTTTCACTGAGTTCAAAAATGAAGTTGAACTTATAGCTAAACTACAACACACAAATCTTGTTAGGCTGCTGGGATGCTGCATTCAGGGAGAGGAGAAAATATTGGTGTATGAATATTTGCCAAACAAAAGCTTAGATTTCTTTATCTTTGATGTCGACAAAACCAGTTTAATTGACTGGAATAAACGTTGCGGAATAATTGAAGGGATAGCTCAAGGTCTTCTTTACTTGCACAAGCACTCTCGGCTCCGTGTCATACACAGAGACCTTAAAGCCAGCAACATTCTTTTGGACCAGGACATGAATCCTAAAATATCTGATTTTGGGCTAGCAAAAATTTTTAGCTCTAATAATACCGAAGGAAACACAAAGAGGGTGGTGGGAACATATGGTTACATGTCACCAGAGTATGCCTCTGAAGGTATCTACTCGATCAAATCTGATGTGTTTAGCTTTGGTGTTCTTCTTCTTGAGATACTTAGCGGAAAAAGGAATTCTGGTTTCCACCAATACGGAGATTTTCTTAACCTCCTAGGCTATGCATGGCATATGTGGGAAGAAGGGAGATGGCTTGATATAATAGGAGCGTCAATTCCTCAGACGATCCCTACAGAAGGGTTGAGGAAGTACATCAACATTGCGCTTATGTGCGTGCAAGAGAACGCAGATGATCGACCGACCATGTCAGATGTCGTAGCGATGCTAAGTAGCGAGAGTGCGGTTCTTCCTGAACCTAAGCACCCGGCATACTACAACCTAAGGGTATCAAAAGTACAGGGATCTACTAATGTTGTTCAATCAATCAGTGTGAATGATGTAACTATCACTTCCAACCCAGAGGGTAGATAG
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| Protein seq | MSVLLLLFLPLAAAQPWQVCQDSRGKYTSNSTYQANIQSLSSTLPAKAAAPSTGLFATRVAGNAPDTVYALAFCRGDITNASACAGCVASGFQDAQQLCPFNKAASLYYDLCLLRFADENFLATNNSDVVMLMNSQNFTASVGSVRLLLFTLLNATAESAASSSRRFTTSRLDVSSLPTLYCLMQCTPDLTAGECAACFEDFPRLTLQYLDGARGGRILATRCTMRYEIYPFYSGDTMLRIINLATTVPEMNTTAPTTPVTVYPQPAGPGGASAPPPPQPNPGIPEQAQRSPYHKSKVWIVAIVAPLLAILFCFMLSIVWIRRGRKGEVNMQNNIAAVNRLEEDALVWRLEERSSEFSLFEFSELLEATDNFAAENRLGQGGFGPVYKGQLHDGVEVAVKRLASQSGQGFTEFKNEVELIAKLQHTNLVRLLGCCIQGEEKILVYEYLPNKSLDFFIFDVDKTSLIDWNKRCGIIEGIAQGLLYLHKHSRLRVIHRDLKASNILLDQDMNPKISDFGLAKIFSSNNTEGNTKRVVGTYGYMSPEYASEGIYSIKSDVFSFGVLLLEILSGKRNSGFHQYGDFLNLLGYAWHMWEEGRWLDIIGASIPQTIPTEGLRKYINIALMCVQENADDRPTMSDVVAMLSSESAVLPEPKHPAYYNLRVSKVQGSTNVVQSISVNDVTITSNPEGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.064719 | 0.277096 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0366300 | RBH | 0.000000 | 0.000000 | 0.677359 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35140 | RBH | 0.655188 | 0.206238 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0366300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017090 | RBH | 0.173872 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016750 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017020 | RBH | 0.0 | 0.486813 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019690 | SBH | 0.114565 | 0.059752 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0017220 | SBH | 0.817842 | 3.596972 | 1.926717 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0270200 | SBH | 0.991466 | 4.50573 | 1.6117055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016550 | SBH | 0.108600 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0268100 | SBH | 1.5036765 | 3.503056 | 3.115409 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0017230 | SBH | 0.040770 | 0.010692 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0017210 | SBH | 0.0 | 3.146911 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0017450 | SBH | 2.405037 | 3.223193 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0017220 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016740 | RBH | 0.0 | 0.0 | 0.242224 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0017300 | SBH | 0.228375 | 1.817827 | 0.754363 |
