Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0326300 | OGI:01037550 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:12517993-12519238 | ||||||||
| Gene Symbol | POD2, OsPOD2, PRX13, OSPRX13, RP-2 or RP-4, prx13 | ||||||||||
| DNA seq | CTGCAGGGCTGCGACGCCTCAGTTTTGATCAACGGGAGCACCACCGAGAGAAGCGCCGGCCCCAACGCGAGCCTCCGGGGCTTCGAGGTGATCGACGCCGCCAAGGCCGCCGTCGAGGCCGCGTGCCCGAGCACCGTCTCCTGTGCCGACATCCTCGCCTTCGCCGCCCGCGACGGCATCAAGCTCACCGGCAATGTCGACTACCAGGTCCCCGCCGGCCGCCGCGATGGCAACGTCTCCATCGCCCAGGACGCCCTCGACAACCTGCCCCCACCCACCGCCACGGCGAAGGAGCTCACCGACAAGTTCGCCAACAAGTCCCTCACCCTCGAGGACATGGTCGTCCTCTCCGGCGCCCACACCGTCGGCCGCTCCTTCTGCTCCTCCTTCCTCGACCGCATCTGGAACAACACCACCGCCATCGTACGTACATAGCTCGCCGGCGACGGCGAACTCTATCGATCGCCATTTGACCATTTCGCCATTGACGGCTCACATGGCGGCGGCCGGTGTGTTCGTGTGCAGGTGGACACGGGGCTGAGCCCGGGGTACGCGGCGCTTCTGAGGGCGCTGTGCCCGTCGAACGCGAACGCGTCGACGCCGATCACGACGGCGATCGACGTGAGCACGCCGGCGACGCTGGACAACAACTACTACAAGCTGCTGCCGCTCGACCTGGGGCTCTTCTTCTCCGACAACCAGCTGCGGGTGAACGCGACGATGAACGCGCTGGTGACACGGTTCGCGGCGAACGAAACGGAGTGGAAGCAGCGTTTCGCCGACGCCATGGTGAAGATGGGCAACATAGAGGTGCTGACTGGGGGAGCCGGCCAGATCAGGCTCAACTGCAACGTCGTCAACCCTTCGTCGTCGTCCTCGTCGCCGGTGGTCCAGCTGGCCGGCGAGGAGGAGGCCGCCGCCGCCGGCGCCGTCGCGGCGAGCTAGATGACCATATACACGTGTTAGCCGTTGGATGCGAATGCTCAATTCGATCGCGTCATTTTGATCGATTTCCTTTCCTTTTTGACGTGCACGAACATCTAAAGTTGCGTGGACTAGTAGTGTATATGGTCGTGTCGATCTTTTCGTATACGTAACGTACAGTAGTGCAACTGTACACGTACTGTACTGTACATACATTTTGCATATTGTGCGTGTAATCTTCGAATGTTTTAGTCGGTTTTCCAGTGATGGATAATAATATAGGAAATAATAAGTACGTACACGTATACGTACCATTTGTGTT
More
|
||||||||||
| CDS seq | CTGCAGGGCTGCGACGCCTCAGTTTTGATCAACGGGAGCACCACCGAGAGAAGCGCCGGCCCCAACGCGAGCCTCCGGGGCTTCGAGGTGATCGACGCCGCCAAGGCCGCCGTCGAGGCCGCGTGCCCGAGCACCGTCTCCTGTGCCGACATCCTCGCCTTCGCCGCCCGCGACGGCATCAAGCTCACCGGCAATGTCGACTACCAGGTCCCCGCCGGCCGCCGCGATGGCAACGTCTCCATCGCCCAGGACGCCCTCGACAACCTGCCCCCACCCACCGCCACGGCGAAGGAGCTCACCGACAAGTTCGCCAACAAGTCCCTCACCCTCGAGGACATGGTCGTCCTCTCCGGCGCCCACACCGTCGGCCGCTCCTTCTGCTCCTCCTTCCTCGACCGCATCTGGAACAACACCACCGCCATCGTGGACACGGGGCTGAGCCCGGGGTACGCGGCGCTTCTGAGGGCGCTGTGCCCGTCGAACGCGAACGCGTCGACGCCGATCACGACGGCGATCGACGTGAGCACGCCGGCGACGCTGGACAACAACTACTACAAGCTGCTGCCGCTCGACCTGGGGCTCTTCTTCTCCGACAACCAGCTGCGGGTGAACGCGACGATGAACGCGCTGGTGACACGGTTCGCGGCGAACGAAACGGAGTGGAAGCAGCGTTTCGCCGACGCCATGGTGAAGATGGGCAACATAGAGGTGCTGACTGGGGGAGCCGGCCAGATCAGGCTCAACTGCAACGTCGTCAACCCTTCGTCGTCGTCCTCGTCGCCGGTGGTCCAGCTGGCCGGCGAGGAGGAGGCCGCCGCCGCCGGCGCCGTCGCGGCGAGCTAG
More
|
||||||||||
| Protein seq | LQGCDASVLINGSTTERSAGPNASLRGFEVIDAAKAAVEAACPSTVSCADILAFAARDGIKLTGNVDYQVPAGRRDGNVSIAQDALDNLPPPTATAKELTDKFANKSLTLEDMVVLSGAHTVGRSFCSSFLDRIWNNTTAIVDTGLSPGYAALLRALCPSNANASTPITTAIDVSTPATLDNNYYKLLPLDLGLFFSDNQLRVNATMNALVTRFAANETEWKQRFADAMVKMGNIEVLTGGAGQIRLNCNVVNPSSSSSSPVVQLAGEEEAAAAGAVAAS |
||||||||||
| Function | Peroxidase 1 [UniProtKB/Swiss-Prot:A5H8G4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0326300 | Os01t0326300-01 | Chr01 | 12517993 | 12519238 | + | irgsp1_rep | ||
| CDS seq | CTGCAGGGCTGCGACGCCTCAGTTTTGATCAACGGGAGCACCACCGAGAGAAGCGCCGGCCCCAACGCGAGCCTCCGGGGCTTCGAGGTGATCGACGCCGCCAAGGCCGCCGTCGAGGCCGCGTGCCCGAGCACCGTCTCCTGTGCCGACATCCTCGCCTTCGCCGCCCGCGACGGCATCAAGCTCACCGGCAATGTCGACTACCAGGTCCCCGCCGGCCGCCGCGATGGCAACGTCTCCATCGCCCAGGACGCCCTCGACAACCTGCCCCCACCCACCGCCACGGCGAAGGAGCTCACCGACAAGTTCGCCAACAAGTCCCTCACCCTCGAGGACATGGTCGTCCTCTCCGGCGCCCACACCGTCGGCCGCTCCTTCTGCTCCTCCTTCCTCGACCGCATCTGGAACAACACCACCGCCATCGTGGACACGGGGCTGAGCCCGGGGTACGCGGCGCTTCTGAGGGCGCTGTGCCCGTCGAACGCGAACGCGTCGACGCCGATCACGACGGCGATCGACGTGAGCACGCCGGCGACGCTGGACAACAACTACTACAAGCTGCTGCCGCTCGACCTGGGGCTCTTCTTCTCCGACAACCAGCTGCGGGTGAACGCGACGATGAACGCGCTGGTGACACGGTTCGCGGCGAACGAAACGGAGTGGAAGCAGCGTTTCGCCGACGCCATGGTGAAGATGGGCAACATAGAGGTGCTGACTGGGGGAGCCGGCCAGATCAGGCTCAACTGCAACGTCGTCAACCCTTCGTCGTCGTCCTCGTCGCCGGTGGTCCAGCTGGCCGGCGAGGAGGAGGCCGCCGCCGCCGGCGCCGTCGCGGCGAGCTAG
More
|
|||||||
| Protein seq | LQGCDASVLINGSTTERSAGPNASLRGFEVIDAAKAAVEAACPSTVSCADILAFAARDGIKLTGNVDYQVPAGRRDGNVSIAQDALDNLPPPTATAKELTDKFANKSLTLEDMVVLSGAHTVGRSFCSSFLDRIWNNTTAIVDTGLSPGYAALLRALCPSNANASTPITTAIDVSTPATLDNNYYKLLPLDLGLFFSDNQLRVNATMNALVTRFAANETEWKQRFADAMVKMGNIEVLTGGAGQIRLNCNVVNPSSSSSSPVVQLAGEEEAAAAGAVAAS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0326300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g22249 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0135200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0015020 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0014790 | SBH | 0.0 | 5.455567 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0014500 | SBH | 0.0 | 0.169361 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0014580 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0208700 | SBH | 1.072067 | 2.9611 | 0.104659 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0014500 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0204700 | RBH | 0.3920825 | 0.08412 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0014520 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046840 | SBH | 0.618584 | 20.528595 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0014500 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0014620 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014330 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G014690 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0014490 | SBH | 0.0 | 0.0 | 0.0 |
