Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0178900 | OGI:01014830 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:4106828-4108508 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAAGGAAGAAGCAAGTAATTCAGGAGTAAGAGAAAAATACCGCCTGGTTGAGTTAAATTTACTTTGGAATAGCAACTTGAAAAGTAGAAGCAGTGACGTAGAAATAAGTGTTCTTGAGGGTCTTCAACCCCATCCAAATCTCAGACATCTCAGGATAATAAATTATAGAGGCTCTACATCACCAACATGGCTAGCTACGGATTTACATACCAAATACTTGGAGTCCCTCTACCTACATGATTGCTCCGGATGGGAAATGCTTCCTCCTCTTGGACAGCTTCCTTATCTAAGGAGACTTCATTTCACTGGTATGGGTTCCATCCTAAGCATAGGTCCTGAACTCTATGGAAGTGGCTCTTTAATGGGTTTCCCTTGTTTAGAAGAGTTGCATTTTGAGAACATGCTAGAGTGGCGATCATGGTGTGGGGTTGAGAAAGAATGCTTCTTTCCTAAATTGCTGACATTGACCATCATGGACTGTCCCAGCTTGCAGATGCTACCTGTTGAGCAATGGTCTGACCAAGTCAACTACAAATGGTTCCCTTGCCTTGAAATGCTTGACATCCAAAACTGTCCTAGCCTGGATCAATTGCCTCCACTTCCACATTCTTCAACGTTGTCAAGGATAAGTTTGAAAAATGCAGGGATAATCTCTCTCATGGAGTTGAATGATGAAGAGATTGTAATTTCTGGCATATCTGATTTGGTGCTGGAAAGACAATTATTTCTGCCATTTCATAACTTGAGGAGCCTCAAGAGTTTCAGCATACCAGGTTGTGATAATTTCATGGTACTACCATTGAAAGGCCAGGGAAAGCATGATATTTCTGAGGTATCGACGACTATGGATGATTCTGGATCCTCACTGTCTAACATCAGTGAACTCAAGATATGCGGTTCTGGGATATCTGAGGATGTACTACATGAAATTTTATCAAATGTTGGCATTCTTGACTGCTTGTCAATAAAGGACTGCCCCCAGGTTACTTCCCTTGAGCTGAACCCAATGGTAAGACTGGATTACCTGATTATAGAAGATTGCCTAGAGCTCACGACATTGAAATGTATGAAAACTCTCATCCATCTAACAGAACTGACTGTGCTAAGAAGTCCTAAGTTCATGGAGGGATGGAAAAATCTCGTCGAAGAGGCAGAGGGATCACATCTCAGAATTACTGCCTCACTGAAAAGACTGCATATTGATGATTTATCATTCCTTACCATGCCAATTTGTAGGACACTTGGGTATCTTCAATATTTGATGATTGACACGGATCAGCAAACCATATGCCTAACTCCAGAGCAGGAGCAAGCATTTGGTACACTGACTTCATTGAAAACACTCGTGTTCAGTGAATGCTCATATCTCCGCTCATTGCCTGCAACGCTGCACCAGATTTCCTCCCTGAAGAGCCTGCATTTATCATCGTGTGAGAGCATAGACTCCCTACCACACCTGGGATTGCCAGGATCACTGGAAAGGTTGTTCATTGCTGGATGTGACCTGTTGAGAGACAAGTGCGTAGAAGGTGGGATTGACCAGCACAAAATCGCACATGTCAGGGAAACAATTTTGGCATAGCATTGATTTCTCCAATGACCTCTAACAAATGTAGTGAGTAGTGACTACTGGTTTGATATGTTTACTTTCAGTAATAAAGCAACTCTATAATTTTTTTTC
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| CDS seq | AAGGAAGAAGCAAGTAATTCAGGAGTAAGAGAAAAATACCGCCTGGTTGAGTTAAATTTACTTTGGAATAGCAACTTGAAAAGTAGAAGCAGTGACGTAGAAATAAGTGTTCTTGAGGGTCTTCAACCCCATCCAAATCTCAGACATCTCAGGATAATAAATTATAGAGGCTCTACATCACCAACATGGCTAGCTACGGATTTACATACCAAATACTTGGAGTCCCTCTACCTACATGATTGCTCCGGATGGGAAATGCTTCCTCCTCTTGGACAGCTTCCTTATCTAAGGAGACTTCATTTCACTGGTATGGGTTCCATCCTAAGCATAGGTCCTGAACTCTATGGAAGTGGCTCTTTAATGGGTTTCCCTTGTTTAGAAGAGTTGCATTTTGAGAACATGCTAGAGTGGCGATCATGGTGTGGGGTTGAGAAAGAATGCTTCTTTCCTAAATTGCTGACATTGACCATCATGGACTGTCCCAGCTTGCAGATGCTACCTGTTGAGCAATGGTCTGACCAAGTCAACTACAAATGGTTCCCTTGCCTTGAAATGCTTGACATCCAAAACTGTCCTAGCCTGGATCAATTGCCTCCACTTCCACATTCTTCAACGTTGTCAAGGATAAGTTTGAAAAATGCAGGGATAATCTCTCTCATGGAGTTGAATGATGAAGAGATTGTAATTTCTGGCATATCTGATTTGGTGCTGGAAAGACAATTATTTCTGCCATTTCATAACTTGAGGAGCCTCAAGAGTTTCAGCATACCAGGTTGTGATAATTTCATGGTACTACCATTGAAAGGCCAGGGAAAGCATGATATTTCTGAGGTATCGACGACTATGGATGATTCTGGATCCTCACTGTCTAACATCAGTGAACTCAAGATATGCGGTTCTGGGATATCTGAGGATGTACTACATGAAATTTTATCAAATGTTGGCATTCTTGACTGCTTGTCAATAAAGGACTGCCCCCAGGTTACTTCCCTTGAGCTGAACCCAATGGTAAGACTGGATTACCTGATTATAGAAGATTGCCTAGAGCTCACGACATTGAAATGTATGAAAACTCTCATCCATCTAACAGAACTGACTGTGCTAAGAAGTCCTAAGTTCATGGAGGGATGGAAAAATCTCGTCGAAGAGGCAGAGGGATCACATCTCAGAATTACTGCCTCACTGAAAAGACTGCATATTGATGATTTATCATTCCTTACCATGCCAATTTGTAGGACACTTGGGTATCTTCAATATTTGATGATTGACACGGATCAGCAAACCATATGCCTAACTCCAGAGCAGGAGCAAGCATTTGGTACACTGACTTCATTGAAAACACTCGTGTTCAGTGAATGCTCATATCTCCGCTCATTGCCTGCAACGCTGCACCAGATTTCCTCCCTGAAGAGCCTGCATTTATCATCGTGTGAGAGCATAGACTCCCTACCACACCTGGGATTGCCAGGATCACTGGAAAGGTTGTTCATTGCTGGATGTGACCTGTTGAGAGACAAGTGCGTAGAAGGTGGGATTGACCAGCACAAAATCGCACATGTCAGGGAAACAATTTTGGCATAG
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| Protein seq | KEEASNSGVREKYRLVELNLLWNSNLKSRSSDVEISVLEGLQPHPNLRHLRIINYRGSTSPTWLATDLHTKYLESLYLHDCSGWEMLPPLGQLPYLRRLHFTGMGSILSIGPELYGSGSLMGFPCLEELHFENMLEWRSWCGVEKECFFPKLLTLTIMDCPSLQMLPVEQWSDQVNYKWFPCLEMLDIQNCPSLDQLPPLPHSSTLSRISLKNAGIISLMELNDEEIVISGISDLVLERQLFLPFHNLRSLKSFSIPGCDNFMVLPLKGQGKHDISEVSTTMDDSGSSLSNISELKICGSGISEDVLHEILSNVGILDCLSIKDCPQVTSLELNPMVRLDYLIIEDCLELTTLKCMKTLIHLTELTVLRSPKFMEGWKNLVEEAEGSHLRITASLKRLHIDDLSFLTMPICRTLGYLQYLMIDTDQQTICLTPEQEQAFGTLTSLKTLVFSECSYLRSLPATLHQISSLKSLHLSSCESIDSLPHLGLPGSLERLFIAGCDLLRDKCVEGGIDQHKIAHVRETILA |
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| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0178900 | Os01t0178900-01 | Chr01 | 4106828 | 4108508 | + | irgsp1_rep | ||
| CDS seq | AAGGAAGAAGCAAGTAATTCAGGAGTAAGAGAAAAATACCGCCTGGTTGAGTTAAATTTACTTTGGAATAGCAACTTGAAAAGTAGAAGCAGTGACGTAGAAATAAGTGTTCTTGAGGGTCTTCAACCCCATCCAAATCTCAGACATCTCAGGATAATAAATTATAGAGGCTCTACATCACCAACATGGCTAGCTACGGATTTACATACCAAATACTTGGAGTCCCTCTACCTACATGATTGCTCCGGATGGGAAATGCTTCCTCCTCTTGGACAGCTTCCTTATCTAAGGAGACTTCATTTCACTGGTATGGGTTCCATCCTAAGCATAGGTCCTGAACTCTATGGAAGTGGCTCTTTAATGGGTTTCCCTTGTTTAGAAGAGTTGCATTTTGAGAACATGCTAGAGTGGCGATCATGGTGTGGGGTTGAGAAAGAATGCTTCTTTCCTAAATTGCTGACATTGACCATCATGGACTGTCCCAGCTTGCAGATGCTACCTGTTGAGCAATGGTCTGACCAAGTCAACTACAAATGGTTCCCTTGCCTTGAAATGCTTGACATCCAAAACTGTCCTAGCCTGGATCAATTGCCTCCACTTCCACATTCTTCAACGTTGTCAAGGATAAGTTTGAAAAATGCAGGGATAATCTCTCTCATGGAGTTGAATGATGAAGAGATTGTAATTTCTGGCATATCTGATTTGGTGCTGGAAAGACAATTATTTCTGCCATTTCATAACTTGAGGAGCCTCAAGAGTTTCAGCATACCAGGTTGTGATAATTTCATGGTACTACCATTGAAAGGCCAGGGAAAGCATGATATTTCTGAGGTATCGACGACTATGGATGATTCTGGATCCTCACTGTCTAACATCAGTGAACTCAAGATATGCGGTTCTGGGATATCTGAGGATGTACTACATGAAATTTTATCAAATGTTGGCATTCTTGACTGCTTGTCAATAAAGGACTGCCCCCAGGTTACTTCCCTTGAGCTGAACCCAATGGTAAGACTGGATTACCTGATTATAGAAGATTGCCTAGAGCTCACGACATTGAAATGTATGAAAACTCTCATCCATCTAACAGAACTGACTGTGCTAAGAAGTCCTAAGTTCATGGAGGGATGGAAAAATCTCGTCGAAGAGGCAGAGGGATCACATCTCAGAATTACTGCCTCACTGAAAAGACTGCATATTGATGATTTATCATTCCTTACCATGCCAATTTGTAGGACACTTGGGTATCTTCAATATTTGATGATTGACACGGATCAGCAAACCATATGCCTAACTCCAGAGCAGGAGCAAGCATTTGGTACACTGACTTCATTGAAAACACTCGTGTTCAGTGAATGCTCATATCTCCGCTCATTGCCTGCAACGCTGCACCAGATTTCCTCCCTGAAGAGCCTGCATTTATCATCGTGTGAGAGCATAGACTCCCTACCACACCTGGGATTGCCAGGATCACTGGAAAGGTTGTTCATTGCTGGATGTGACCTGTTGAGAGACAAGTGCGTAGAAGGTGGGATTGACCAGCACAAAATCGCACATGTCAGGGAAACAATTTTGGCATAG
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| Protein seq | KEEASNSGVREKYRLVELNLLWNSNLKSRSSDVEISVLEGLQPHPNLRHLRIINYRGSTSPTWLATDLHTKYLESLYLHDCSGWEMLPPLGQLPYLRRLHFTGMGSILSIGPELYGSGSLMGFPCLEELHFENMLEWRSWCGVEKECFFPKLLTLTIMDCPSLQMLPVEQWSDQVNYKWFPCLEMLDIQNCPSLDQLPPLPHSSTLSRISLKNAGIISLMELNDEEIVISGISDLVLERQLFLPFHNLRSLKSFSIPGCDNFMVLPLKGQGKHDISEVSTTMDDSGSSLSNISELKICGSGISEDVLHEILSNVGILDCLSIKDCPQVTSLELNPMVRLDYLIIEDCLELTTLKCMKTLIHLTELTVLRSPKFMEGWKNLVEEAEGSHLRITASLKRLHIDDLSFLTMPICRTLGYLQYLMIDTDQQTICLTPEQEQAFGTLTSLKTLVFSECSYLRSLPATLHQISSLKSLHLSSCESIDSLPHLGLPGSLERLFIAGCDLLRDKCVEGGIDQHKIAHVRETILA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0178900 | RBH | 0.402528 | 0.547444 | 1.867745 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08370 | RBH | 0.277496 | 0.361113 | 0.471537 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005790 | RBH | 0.115284 | 0.442671 | 1.166196 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005470 | RBH | 0.0 | 0.000000 | 0.469843 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005760 | RBH | 0.471271 | 3.594158 | 2.696963 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005400 | RBH | 0.024659 | 0.048899 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005600 | RBH | 0.928512 | 3.169004 | 5.914983 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0071900 | RBH | 1.620842 | 4.7346645 | 6.0807635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005550 | RBH | 0.037123 | 0.085704 | 0.422154 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0072200 | RBH | 2.3483575 | 3.996258 | 10.839018 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005360 | RBH | 0.114584 | 0.097943 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005550 | RBH | 0.084095 | 2.783346 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005610 | RBH | 0.0 | 5.822258 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0005550 | RBH | 0.212455 | 0.384857 | 0.265165 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005530 | RBH | 0.040825 | 0.958968 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005570 | RBH | 0.360821 | 0.711224 | 1.046217 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005450 | RBH | 0.109554 | 0.000000 | 0.666239 |
