Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0167800 | OGI:01012660 | 11/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:3467858-3472105 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACAGAATAACAGAACAAAACTCCGTTTCCACTCCTGCTCTCCATTGGTAACTGAATGGATCAGGAATGAATGAATGATGATAGTTTTAACCATACATGATGATTCAGCTAAAACTGACAATCACCTTAGCTGAAATGCTGAATCGTGTATATTAAACCAAAGGCTGCTCGCTGAACAAAGCTCAAATGCCATCTGAACAAAGCTCATTTACACCAGGAACAAACATCACCCATGTCTGGGAGTGACCATAGTTCAGAATTTGACCATGTCTGGGAGTGGCTTTGCATTACCATCGACAGCAAAATGGCTGAAATAATTACTGTATAGCATGCAAGCATAAATTTCCTAATGTCATCCTACAACTGTCTAGAAGAACAAATTTGTCTTCAATGGTGTTCGTCTTCAACTGTGGAGGGTCATGAAATGATAAGCTGGTTTGAGCACCATGCCGTTCCTTCATCCCACAGCTTCTTATGGTACATAAACCGCGGGGCTGTAATTTCAAGCAGAACAAGCAGATAACAGTCCATGAGAAATTTAAAATGGCTTAACCATGAAAGAAACAAGCAGCATGGACACGATAAAACTAAAGGAAATGTAGAGTGATTATCCAGAAAGAGCAGAAAAACCAAGCTAAATAACTCACCGTGCAATTCTCATCTCGAACCTGATCTGCCCCTCTTCCTCTTTCCGGTTGATCTTGTTTGAACTGTCCTGTCTGCCTGTGTGCGGCGAGTCCGTGATCGAGATCGCTTCTCAGAACCGAGGCCAGACTCAGTTTCCTGATCAGGCGCCATGGAATGATGTATATCTTCCTCTTTATCCCTCTGTTGCTCTGCCTCTGGTTCAGCTGCAGTTGTTGCAGCAGTCGATGAGCATGGAACCAGATCCACAATGTCGCAAAGTGATGATCCACCAAGTTCCCCAATAACTTCTACACATGTTCTGGTGACTTGGTCAACAAAAGCACGGCATTTGCCTCTAGAGCAACTTTTTTGAGAAGCTGCCTCCTTCGCAAGGACAGTGAGTTTGTCGGTCTGGGGCAAACGATGGGAATTTCAGAGATATATCAAAGTATCCTGCTGGTGGTGGCGAGTCTATCATCCAACCATCATCACCATAGATACATGCATACGTGTTCTTGTTAGTTGAAAAATCTTCACAAAATAATTATGTAATCCGTGCATGCGGTTTGCAATAGAATTATTTAGTGATTCATGTTCAATTGAAAATTATATGCAGCTTTTGAAGTTCAGAATTTATGATATACTTGTTCTAGATCAATGCAACGCATGGGTATTTGGCTAGTAAATATCAAAAGAAGGTAACCTGAATGAAGCTCACACGATCACACCTGCATGGTAGTAGCATGATTTATTTTACAAGTAGGATGTCTTACCACTGAGTGGATCAAATGAGCCCTGGGGGTGTAACGAAGCTGAGAAGCACGAAAAGGATCTTCAGAATCAGAAATTGCACTCCCACCAGATGCCCCACCCTTGTGACCATTACTTATCCTCTTCGGTGTGCACAGGCGAATACGTGTTGATCTTCTGTACCACCGCAAATAATCCATATAACTGCTGTGGTCATATGGCCGGTCTTCCATGACAACATCTTGCTCCTTTGCTTCCCACATATCCACAAAAGACTTGTGCTTCTGTGCCCAGTCATTATGAACCCTTCCACGACGGCACCTGCAAAACATTAGAAAATTTTATGATTCGGCTACCTGTAGATGATTCTATAATTTACCAGGACACACAGTCATGTACAAGAAATAATAAGAATAAAAACAGCAAAGTTCTGTTTTGAAGATACCAGTGAAGCTCCGCACTAGTGTCCCGCAATGGAGGTGGGCACACCTGATGGAGGCCAAATTGGCGCATCACTCTCTCAGGCATGTAGATCTCCACCATAAAGAAGTAAAGTAGAGGTGCTCGGGTTAGCCACAAATGAGAATCCTGGGTACAAATAGGGGCTAGCTGTAGTTCCTTCATCCGTTCCTCCCTATATGGGCACCAAACAACCTGGTCATCCGTTAGCAAGTCAAACTCATTCGTGAAGTGCTCATAGCAACGTGCGGGAGCTGCTCGACGGGCGCACACCCCCACAACCCATCGTAAACCAACTGTGGGTCTATCCCTCTCATCCTCTAGCTCCTCCACATTTGGGTATTTTAGCTTCACCAGGTCTGGCCTGCCAATTGGAAAATGCTCCCATGACCAAAATTGAAGGAGCAAAAGACAACCAGTCAGATTACTTCCATCTGACTGCCTCCTGCAAGCATCACACATTGCCCTGTAGAGATATGCCAGAGTAGCGGAACCCCAACTGTATGAACCAATATTCTCAAGATCAGCAATCAGTGGAAAGGGATAGAAGGTATACAAATCACCAGAGGCATCAGGAAACAGCAGACCACTAATCAGGCTAAGGATGTATGCCCTGGCATGCTGCTTGATGGTCTCCTCGTCAGCATCTTCTGGACAATTGTTGAACTCAGCTCTGACCCATGAAACCCTCAATCCAGGACGTGGCCTATCCGGCGGAGGAGCCTTCCCAAGGTATCGCTCAACCAATTCATTCTGGGGCTCTGTTGGGTTTACAGTGACAGCATGGCCAGCGATTGGCAATCCAAGAATCATTGCAACATCCTGTAGTGTGATTGTGATCTCACCACAAGGCATGTGAAAAGTGTGAGTTTCAGGTCTCCACCTATCAACTAGTGCAGAGACGAGTGCCCGATCAATGGAGGGCAGACCAGCCCTACAAATGTTTGCCAGTCCCATCAGGCCAGCGGGCCTAAGGTAACGCTCATACCTCCTGTCAAAGCGAAGAGGTTCACGGGTACGAGGGTTGAGCTCAGTCAAATGCTGTACCAAACATTGGAAATTGCAAATCAACAGTTTGTTACACGACAAAAGATTGTAATATAAATGCTATAGGTACTCTTTGATCTACCTGGCCTGATGCTAAAGCACGAGCCCGATGATCAGCATCATACTGCCCAATTAAATCATAGGAAGTGGTATCAACTGCTTCTGAAGCTCCATTCTGATCTGGACAACCATCATCAGAGAAGGTCCTGGTGCTCTTTCTTGGTTTTCGTTGCCGTGTGTTCTGAGGATGTCCATTTAGTGGACTAACATTCACCGTTGAAGGGATAACAAACGACATGTCCTGTTCTGGATTCTGCGGTTGGCCATTTTGACGTTGTGCATAAAGCGGTTTGATAGCCATTAGTGCTCTCTCTGAGGATATGCCCTCTGTCAAGGAACAAATTTCTGCTTGAACAAAAATCTCTAGGCAGTTCCACTCAGTCCCATTGAAAACAGCTTTCACATAGCTACTCCATGACATGTCATCATCGATAGGCACCATGATGAAGTGCCGATGAGCACCACCACCAACGTTCAACCTTCCCTGCGCACGAATGCTGAGCATCGTAGGCACCCACCCGAGCTTCTTGTACACGGCATCAATCAGTTCATCGAATGCAGGCTTCGCCTTGAACCATAAACCCTCCTCGGCGAGGTTGCCAAACTCCACCCCGTTTGGACCCTTCACCAGCTCCCCGCCACTGTAAACTCGCACAAATCTGTCCATCTCTGCAGCCAAACATGAATGCACCCCAATTCAAGATCAGCTCAAAGCCTCAAATCCAGTTTCAGTAATCTATAGCATGAACAATGAGTCCATGATGTATGAGGAGCATACGAACAAGTTCTTGTTAAACGAATACGAAGCACTTAGATAACAAAATCAACCCAAGTTATCCACTCAACTGAGGTACCATACCAACCAGAGAAAACCCAAGAAATGCTCTTACAAGTAGTATCCTAGGAACTGCAACATGTCAATTCTCAAATGCTCAAACCTAGTTTTAAACCCACTCCACACCATTCGCAATGAAAAAAAAAGGGTAATATAGTGACCAACGCAAGCTACACCATGCGAGTGACAAACAGCTTAGCTAAAATTTCCTCTCGATGCTCACTGGCGGCGCGGGGGGGCATCACCTATACTGAACTGGTGGAACAAAGGTAGATGAACTGTTCATCCAAATGGATCTTATCTCCGCGACCGCGAGCGGTGACGGAGGCTTCGGGAGGGGAGGAGAGGAACGGGAGTGCGGCGGGGCTTACCTTACCGCGGCGGTGGCGGCGCCGAAGGAATCCGCGGCGGCAGCGGCGTCGCGGGGTGGCGCGGCGGCGAGTGGGGAACGCGGCTTTCTTTTTTTCACC
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| CDS seq | ATGGACAGATTTGTGCGAGTTTACAGTGGCGGGGAGCTGGTGAAGGGTCCAAACGGGGTGGAGTTTGGCAACCTCGCCGAGGAGGGTTTATGGTTCAAGGCGAAGCCTGCATTCGATGAACTGATTGATGCCGTGTACAAGAAGCTCGGGTGGGTGCCTACGATGCTCAGCATTCGTGCGCAGGGAAGGTTGAACGTTGGTGGTGGTGCTCATCGGCACTTCATCATGGTGCCTATCGATGATGACATGTCATGGAGTAGCTATGTGAAAGCTGTTTTCAATGGGACTGAGTGGAACTGCCTAGAGATTTTTGTTCAAGCAGAAATTTGTTCCTTGACAGAGGGCATATCCTCAGAGAGAGCACTAATGGCTATCAAACCGCTTTATGCACAACGTCAAAATGGCCAACCGCAGAATCCAGAACAGGACATGTCGTTTGTTATCCCTTCAACGGTGAATGTTAGTCCACTAAATGGACATCCTCAGAACACACGGCAACGAAAACCAAGAAAGAGCACCAGGACCTTCTCTGATGATGGTTGTCCAGATCAGAATGGAGCTTCAGAAGCAGTTGATACCACTTCCTATGATTTAATTGGGCAGTATGATGCTGATCATCGGGCTCGTGCTTTAGCATCAGGCCAGGTAGATCAAAGAGTACCTATAGCATTTATATTACAATCTTTTGTCGTGTAA
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| Protein seq | MDRFVRVYSGGELVKGPNGVEFGNLAEEGLWFKAKPAFDELIDAVYKKLGWVPTMLSIRAQGRLNVGGGAHRHFIMVPIDDDMSWSSYVKAVFNGTEWNCLEIFVQAEICSLTEGISSERALMAIKPLYAQRQNGQPQNPEQDMSFVIPSTVNVSPLNGHPQNTRQRKPRKSTRTFSDDGCPDQNGASEAVDTTSYDLIGQYDADHRARALASGQVDQRVPIAFILQSFVV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0167800 | Os01t0167800-01 | Chr01 | 3467858 | 3472105 | - | irgsp1_rep | ||
| CDS seq | ATGGACAGATTTGTGCGAGTTTACAGTGGCGGGGAGCTGGTGAAGGGTCCAAACGGGGTGGAGTTTGGCAACCTCGCCGAGGAGGGTTTATGGTTCAAGGCGAAGCCTGCATTCGATGAACTGATTGATGCCGTGTACAAGAAGCTCGGGTGGGTGCCTACGATGCTCAGCATTCGTGCGCAGGGAAGGTTGAACGTTGGTGGTGGTGCTCATCGGCACTTCATCATGGTGCCTATCGATGATGACATGTCATGGAGTAGCTATGTGAAAGCTGTTTTCAATGGGACTGAGTGGAACTGCCTAGAGATTTTTGTTCAAGCAGAAATTTGTTCCTTGACAGAGGGCATATCCTCAGAGAGAGCACTAATGGCTATCAAACCGCTTTATGCACAACGTCAAAATGGCCAACCGCAGAATCCAGAACAGGACATGTCGTTTGTTATCCCTTCAACGGTGAATGTTAGTCCACTAAATGGACATCCTCAGAACACACGGCAACGAAAACCAAGAAAGAGCACCAGGACCTTCTCTGATGATGGTTGTCCAGATCAGAATGGAGCTTCAGAAGCAGTTGATACCACTTCCTATGATTTAATTGGGCAGTATGATGCTGATCATCGGGCTCGTGCTTTAGCATCAGGCCAGGTAGATCAAAGAGTACCTATAGCATTTATATTACAATCTTTTGTCGTGTAA
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| Protein seq | MDRFVRVYSGGELVKGPNGVEFGNLAEEGLWFKAKPAFDELIDAVYKKLGWVPTMLSIRAQGRLNVGGGAHRHFIMVPIDDDMSWSSYVKAVFNGTEWNCLEIFVQAEICSLTEGISSERALMAIKPLYAQRQNGQPQNPEQDMSFVIPSTVNVSPLNGHPQNTRQRKPRKSTRTFSDDGCPDQNGASEAVDTTSYDLIGQYDADHRARALASGQVDQRVPIAFILQSFVV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0167800 | RBH | 0.0 | 0.152897 | 0.939058 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g18470 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004910 | RBH | 0.0 | 0.0 | 0.911218 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004610 | RBH | 0.0 | 0.0 | 0.754375 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004850 | RBH | 0.000000 | 0.0 | 2.809726 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0004520 | RBH | 0.0 | 0.296347 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004740 | RBH | 0.0 | 1.635761 | 3.696936 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0061500 | RBH | 1.277554 | 3.804716 | 2.283627 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004670 | RBH | 0.0 | 0.000000 | 0.235308 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0062500 | RBH | 1.35022 | 2.711586 | 4.6095195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0004510 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004680 | RBH | 0.0 | 3.532674 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004740 | RBH | 0.0 | 9.072193 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004700 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004670 | RBH | 0.0 | 6.973186 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004740 | RBH | 0.0 | 1.277913 | 0.509832 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004620 | RBH | 1.399844 | 7.124602 | 0.552289 |
