Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g42110 | OGI:12067140 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:26109881-26115852 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATAAGAACAATAGATGTAATATATTTGGATGGTTCACAAGAATTCAAATACATGAATTTTAGAAGAAATCCTATGTAGAAAAGAAAGCAGAGAGAGAGGAAAAATAAAAAAATAAAACAAGAGATATGAGCTCATGTTATACTTCTTATGGAATGAAGTGTATAGGGAAGCAATCCATAGTAACCTTGCAATACTATTCCTTTGGTACAAAGGGTGTCACAGTAATTTTTTTCACCAAGGATTCCAATACTTAAAAGTAATTATATGGGCTCCTTTGAATCACAGGATTGAAAAAAAAATGGAGAATTAGGAAAAATATAGGATTCTGATATAAATATAAATATAAAATAGAGGATTGGAAAATACATGAAAAAAATATAGGAATGACCGTTTGGTTGGGCCGCAATAAAAACACATGAATTTTGGGAGAGATAAAGAGTCAAAGGATTCTTTCCATGATGTTCTACCTTATGTTAAATTTCCTTCAAAAATTTATGGGAAGAAGCATTCCATATGAATTTCATAGGATTTATTCCTTTGATTCAAAAGCTATATACGAAAAGTTCCTATAAGAATGAAATCCTTTAAAATTCATATGAATTTCCTTTCAATCAAAGGGGCTAAGAATTTCTTCTATCCAAAAGATCTTGTAATACTTCTACATTTGCACGATCCTTTTTCATAAATTTGTATTAACTACTGGACCTAAGTGGAAAAAAGTCCATAGGGGTGAGACCGTGAGAGTACACCCCTGCCCTGACGTCCTGACCCCACCACGGCTTTCATCAAAAACCCGCCGCCGGCGCCGCCGCCGGCACATTCTCCGGCATCCTCCGGCCATTTCCGGTCACTCTCATAGCCTCCAAATATAACTACGGAGGGAGTAGAAGCTAACAAGATTCCATCATACGAACTAAGAAATATGCCTGATCTGTATAGCGCTGTAGTCATCTAAACAACAAATAAAAGCATTGGTCCGTACCTTTGTCAAATTTACAGATCAATGTAGACACGCGATCCATCACGGGCTAACTGCACATCTATCCCCTCCCTGTACTCAATAGATAATTACAGTGCATGAGTATGCATATCTTTCAGGAACTTACAATAAAGAGAAATAAGACTCTATTTCAGTAGTCGAGTAGTACATATTTTGTAATGCAGACAAAATATGTACTGCTCGTGCCAAATTATTTGGGGACACTAGCATGTATGTACGATCATCTAAGTCATCTTGCAGGAAACCCTACCTTCTGGACCACTCTTCCAACGTTTCATTGTCCTTGTGATGGTCCATTTCATCAGTCATCCCAATGAGCAATGCCCTTTTGGGGCAAATCCTCTTAACAGCATCCAGTGTCTGCATGGCATCATAGTATTAAAATTTAGCATGAGAAACCAGTTAGCTTTGAGGAGATAATAAAACAAATTGCTCAGGTCATTCAATAGAAATCCAACCTGATCCCAACAAAGATGGACATTATGAGAACCAGTCTGTTCACATAGAGAGATAACGTCAGCCCACAACAGATCAGTACGAACAATGATACAACCTATTTTGCAATTTGCCTAACTAATGCAAATTTCAAGCAATCAGTGACGATGTTCATGTGAAATGCAACAAGCATGACATGTGTTGAAACAAGATTAAAGCAGTATTCATGTTTGGCATATGCCAGCTCTGATCTGCTCTTGATGAATTGCAATTGACAGAATGGTTGTCTAGAAACAAGTATGAAACATGAAATTAAAAGGAAAAACATCCATCACTCACAACTTAAGGAATTGAAGAAACTCACCCTACTAAGGCAATCCAAGATGAGCAAATCCAGCTGACCCCCTCCAGACTTTGAAATTGCTGAAAGGTAGGCATATGTACACAATGATGAGGTCCTGGGTAATGAAAACAAGATAGAAAGGAAATAAACTGACCAGATTCCTAGCTATTTCCAATGCAAACGATGAACAAGTATGCTTGCATGCATCTCCAAGAGAGAAGGGTTTATGGATAAATATTTCCTTACCAATCTCCATGGTTAAGTACACATGTCCATAGACCAAAATTGCATTATAGTATATGCTAGAGGGGGCACCGATGCATTGTGGTGAGCACCAAGCCATCAAGCGGAGAATTACCAATCAGTACCAGCATGCGTGCATTGCAGCCAATGCAAAACGAATATAGTATATGACCTAGAACTAAAAATGTATAAAATGATTGTCCTCAATAGTCCATTCAAACAACTATATGACTAGATGAGATCAAGCACTTCTTTACTAAATATATCATATTACAATATTAGATACAACTGACTCAAGTCTGCATATATCTAATAATAATAGATCATGATGAGGCAATGGGTGTAGAACACACCATCACCCCTAACTCCTAAATTTAACAAGAAAGATAAAGAAATAAACCAGGCTGGTACTAGTTGAATTTATGACAAAAATATAGAACAGGTGATTATTGCCCTATGGTCTCATGTCAGGATATTTATTCCCAGAAGGTAATCACAGGCACGGTAACTATTCAGCATTAGGAGGCGAAGGTATACCATGTTCTGTGCTTGGAGGAAACCATGAAACGTCTGATATATAAGCAACTTTTGATTTTCTTCCAAAAAGGAAACCCAGACAAATGTAGTCCTCGCCATGGATCACCTAAGAGATATACAAAAGTAAGGAAAATGGAAGGAGCAAAATAACAGAGGGTGATAGAAAAATGCAAACATTACTGGAAGGGGAACAAACTCTAGCCCTGAGGTCACAAATGGTATCTGAAGATCACTCTCGATTACTCTCCAGTCAAGCTGAGCAACTCGCCGAACCTCCTCCCCTTCCTTTAGTTTCTTTCTGACCAAGTAAGGAAACTTTTGGGCAATGCTGTTCCAAATTAAACATGTAAGTTAGTACAAATCATCACTTACATTCCCACTTAATGACAGTTGGCAGGTGCGAAACAATGATGAAACACGAGAAGAGCGAGGCAATTCAAACATTATTCATCATGAATACCTCCAGTAGGGAAGAGTTCTGGAAATAAAAAATCAAAAGAAAACAATATATCTTTGGAACACCATTTTAATCAAAGTTTCTCTGACAAGGTAGGCCAGTTCCTTTCCAAATGTTCGGAGCATACCAAACAAGTCAATACTTCTATCAAGCCTAGAAAGGGTTTGCTGTCCCTAAATAACTAGGACAAGAATCCACATGACCACAAAAAGGAGTTTATCAACTATCAACAATAACATATTAAACATGATGTATTTAATATGTTTTACTTTGTTGACCGAATTTCCATAATGCTGTAACTTGACAAGTTTTATATTCACTGTCTAATTTTATGGTTATTAAGTTGCCAATTAATCTAATATTTCTGACTGGTACACAAGCAGGTCTGCACTGCACACAACACGAGAAAAAAGATTACTGTAGGTTGGCAATTACAGTGTAATACTTTAGTTGAAAGAATAAAACAAAACAAAGAGTAAACAATGCTAAAATAGTTAATGTGGCACAAATCCAAAAGTAATTAAACTTTAGCACAGCAAGAGCTGCAAGACTCAAAAAGTGCACGGCATGTACACTTGGCAAAGCTCAATTATAATTCATTACCTGTCCATAGCAAATTGGGATAGATAAATTGGAGTTGGTTCAATATCATTCGTAGGACTAAATGACTGTACAATCCGAACATCATCAAGACCCAAGATTGCATCAGCATGCTCATGAGTCAGAATAATCTGTAATGAATAATTAAAATGTGTTAGTATAGGCATAAACATTGAGCATTTTTTTTATTATTTTACGGTAGATTCATCCACCGAAGCAGCTCTTATTCATAGAAGTGAGAAGTTGAAGCAAAAAAAACAAAAGAAAAGAAAAGGAACTCACAGAATCAACACAAGGGATTTTATGATGGACAAACCACCGTAGAACTTGTTCTCGGAATGTCTTCCCAACATCAATTAGAATATATTTGTGTGCATTTTCATCTTGGCAATAGTCAATCAGAAGAGAAGTATTGCACCTGTGCGAACCAAAGTATTAATATAGTCCCAGAAAAATGACACATAAGCATAATGTTGCCATCAACCATTGTTTGTGCAATAATATTCCAAAACATCTGAGAAACAAGCATGGTGAGCAACTAACTGTTAAGGCTGACAATTACCAAAAGGGGAAGGAAGAAGCTAAGAATCGGTTGGCTAGTTGGCTCCAAATGAACATAATATGCATGATACAAACTAAGGGGGAGTTTAGATCCAGGGGTGTAAAGTTTTGGCGTGTCATATCGGGTATTATATAGGGTGTCGCATGGGGTGTTCGGGCACTAATAAAAAAACTAATTACATAATCCGTCAGTAAACCGCGAGATGAATTTATTAAGTCTAATTAATCCGTCATTAGCAAATGTTTACTGTAGCACCTCATTGTCAAATCATGGAGCAATTAGGCTTAAAAGATTCGTCTCGCAAATTAGTCACAATCTGTGCAATTAATTATTTTTTTAGCCTATATTTAATACTTCATGCAGGTACAATCTGTGCAATTAATTATTTTTTAGCCTATATTTAATACTTCATGCAGGTGTCCAAATGTTCAATGTGACAGGGTGAAAAGTTTTGGGGTGGGATCTAAACAGGGCCTAAGCCAACTGAGAAATAAATCTAGGCATATAGAAGGCATTGACCAAGAGTATTAAATGCATATATGAGCACAGATGAAGTGCCTTTTACATTTAAAGATAAGTATGTATATATTTCATATTTGACTCTAAGACTGATTGGTTGGTGCAAGTAACATCACCCAATATTCAGTAAAAAAAATCCTCGAATTTTTGTTAACATAAACACAAGACAAGAAAAATAAGTCACTTGCTTTGCTTCCATGACATTGCACAGTAGCATCTTGAAATTGTGCCCCTTGTTTCTCAGTTTCTGCATACTGAAATATGGATATCTCACCACTATGAGTCCATCTTATTAAAATTCCAACATATTGTTTACTCTTACAGAGGTTGAGCATGACTACCCACTAAGAGTACTGATTGATTGTCTGAGTCCAAAATTTCCGATCAATATCTTGAGCGCGCCATAACACATACTGCAGGTTCTCCTAATTCTCGAAGCATCAATAACTTAAACAATCACTCAGAATTCACTTTGCATACTACTGCTACCATCTGCTGCACAGTTGCAGCAAGCAGCCAAGTAGAAACCAGCGCCCATATTCTGCACAGAATCAGTGCGTGTGAATCTACATTCTACAACAACACAGGCACCTCTCTCATCAACATTTCTCAGCTCTCGAGCGTACCAATCATACAACGCACAAAATCCCATTCCAAAACCCATCCACCGCGCCCAAAACAGAAGCGGAGGCACTCGTTCCAGATCAAAAAGCGTGACACCCGCGAAATCTACACAAATGTACGGAACCAGAACTCCCAATCCATCCCCACGATGATCTCTGATCCACACCGACCCCGTCAAATCTCTCAAACAAACCCCAAGCCGCAACGCATCAGCAGCAGCAGCAAACGTGACCGACACCGCCCGATTCCCTAGAGGAAGAATTTACTCATGATGTATATATACCTGTAGTTAGGGTTTAGCTCGGGGGCCACGGAGAGGGACTGGGAGCAGACGGCGCAGGGCGGGTCGGGGGGCTGGATCAGGCACCGCGCGTTGGGCACGGCGCTGGAGCAGCCCGTCCCGAGGAACACCAGCGAGGATGAGGAGGACGGCGGCGGCGGCGGTGGCGTCCCTCCTTCGCCGGTGGCGGTGGCGGCGCCGTGTCCGTTGGGGACGGAGGAGGCCATTGGCGGCGAGACGAGGCCTCTCTCCGCCGGCGACCGTGGCGACGACGACGAACGGCGACGGCGAGTCGGTGAGGGGGAGGAAAGAGAAACGGAACGGAATCAGGGGGAGAAGAGAAGATGCGGAAATGGTTTTGGGAGGTCGTT
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| CDS seq | ATGGCCTCCTCCGTCCCCAACGGACACGGCGCCGCCACCGCCACCGGCGAAGGAGGGACGCCACCGCCGCCGCCGCCGTCCTCCTCATCCTCGCTGGTGTTCCTCGGGACGGGCTGCTCCAGCGCCGTGCCCAACGCGCGGTGCCTGATCCAGCCCCCCGACCCGCCCTGCGCCGTCTGCTCCCAGTCCCTCTCCGTGGCCCCCGAGCTAAACCCTAACTACAGGTGCAATACTTCTCTTCTGATTGACTATTGCCAAGATGAAAATGCACACAAATATATTCTAATTGATGTTGGGAAGACATTCCGAGAACAAGTTCTACGGTGGTTTGTCCATCATAAAATCCCTTGTGTTGATTCTATTATTCTGACTCATGAGCATGCTGATGCAATCTTGGGTCTTGATGATGTTCGGATTGTACAGTCATTTAGTCCTACGAATGATATTGAACCAACTCCAATTTATCTATCCCAATTTGCTATGGACAGCATTGCCCAAAAGTTTCCTTACTTGGTCAGAAAGAAACTAAAGGAAGGGGAGGAGGTTCGGCGAGTTGCTCAGCTTGACTGGAGAGTAATCGAGAGTGATCTTCAGATACCATTTGTGACCTCAGGGCTAGAGTTTGTTCCCCTTCCAGTGATCCATGGCGAGGACTACATTTGTCTGGGTTTCCTTTTTGGAAGAAAATCAAAAGTTGCTTATATATCAGACGTTTCATGGTTTCCTCCAAGCACAGAACATGGTCATATACTATATTCGTTTTGCATTGGCTGCAATGCACGCATGCTGGTACTGATTGGTAATTCTCCGCTTGATGGCTTGGTGCTCACCACAATGCATCGGTGCCCCCTCTAG
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| Protein seq | MASSVPNGHGAATATGEGGTPPPPPPSSSSSLVFLGTGCSSAVPNARCLIQPPDPPCAVCSQSLSVAPELNPNYRCNTSLLIDYCQDENAHKYILIDVGKTFREQVLRWFVHHKIPCVDSIILTHEHADAILGLDDVRIVQSFSPTNDIEPTPIYLSQFAMDSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQIPFVTSGLEFVPLPVIHGEDYICLGFLFGRKSKVAYISDVSWFPPSTEHGHILYSFCIGCNARMLVLIGNSPLDGLVLTTMHRCPL |
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| Function | Putative hydrolase C777.06c [UniProtKB/Swiss-Prot:O74545] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g42110 | LOC_Os12g42110.1 | Chr12 | 26109881 | 26115852 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCTCCTCCGTCCCCAACGGACACGGCGCCGCCACCGCCACCGGCGAAGGAGGGACGCCACCGCCGCCGCCGCCGTCCTCCTCATCCTCGCTGGTGTTCCTCGGGACGGGCTGCTCCAGCGCCGTGCCCAACGCGCGGTGCCTGATCCAGCCCCCCGACCCGCCCTGCGCCGTCTGCTCCCAGTCCCTCTCCGTGGCCCCCGAGCTAAACCCTAACTACAGGTGCAATACTTCTCTTCTGATTGACTATTGCCAAGATGAAAATGCACACAAATATATTCTAATTGATGTTGGGAAGACATTCCGAGAACAAGTTCTACGGTGGTTTGTCCATCATAAAATCCCTTGTGTTGATTCTATTATTCTGACTCATGAGCATGCTGATGCAATCTTGGGTCTTGATGATGTTCGGATTGTACAGTCATTTAGTCCTACGAATGATATTGAACCAACTCCAATTTATCTATCCCAATTTGCTATGGACAGCATTGCCCAAAAGTTTCCTTACTTGGTCAGAAAGAAACTAAAGGAAGGGGAGGAGGTTCGGCGAGTTGCTCAGCTTGACTGGAGAGTAATCGAGAGTGATCTTCAGATACCATTTGTGACCTCAGGGCTAGAGTTTGTTCCCCTTCCAGTGATCCATGGCGAGGACTACATTTGTCTGGGTTTCCTTTTTGGAAGAAAATCAAAAGTTGCTTATATATCAGACGTTTCATGGTTTCCTCCAAGCACAGAACATGGTCATATACTATATTCGTTTTGCATTGGCTGCAATGCACGCATGCTGGTACTGATTGGTAATTCTCCGCTTGATGGCTTGGTGCTCACCACAATGCATCGGTGCCCCCTCTAG
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| Protein seq | MASSVPNGHGAATATGEGGTPPPPPPSSSSSLVFLGTGCSSAVPNARCLIQPPDPPCAVCSQSLSVAPELNPNYRCNTSLLIDYCQDENAHKYILIDVGKTFREQVLRWFVHHKIPCVDSIILTHEHADAILGLDDVRIVQSFSPTNDIEPTPIYLSQFAMDSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQIPFVTSGLEFVPLPVIHGEDYICLGFLFGRKSKVAYISDVSWFPPSTEHGHILYSFCIGCNARMLVLIGNSPLDGLVLTTMHRCPL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.448863 | 0.977249 | 0.352204 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0615500 | RBH | 1.281323 | 1.754644 | 1.955091 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g44100 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0615500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020820 | SBH | 0.071289 | 28.807552 | 14.959208 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020920 | SBH | 0.365375 | 5.426314 | 4.134045 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021260 | SBH | 0.425503 | 3.691974 | 8.709604 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020580 | SBH | 0.104016 | 0.457587 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020190 | SBH | 54.849434 | 22.401571 | 53.145145 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0350300 | SBH | 1.453784 | 2.127107 | 3.7555015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0020070 | SBH | 2.096323 | 1.304637 | 3.954368 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0380200 | RBH | 3.829146 | 10.008831 | 17.4958305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0020320 | SBH | 0.023671 | 0.129344 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020540 | SBH | 6.818887 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020480 | SBH | 57.181091 | 29.644806 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020530 | SBH | 6.721580 | 0.0 | 6.884636 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020730 | SBH | 0.041415 | 0.858669 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020230 | SBH | 1.253018 | 6.812006 | 3.037562 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020020 | SBH | 2.015735 | 27.757591 | 18.310310 |
