Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os12g40770		OGI:12069410 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr12:25236011-25240748		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		TPR211, OsTPR211
DNA seq		CATTCCTCTTCGTCTCCAAACCCTTCCCAAAACCCTACTCCGCGCACGCGCCTCTCCTTCTAGAACCTTCTGGAACCCTCGCCCCCGCGAAGGCGGCGCCGCCGCCGAGATGGCCTCCTCCCCCTCCGCCGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTCCTGTGTGGTAAGCATCAATCGATCGCCCTCTTTTCTCTCCCTTTCTTTTTTTTTTTTTTTGGAGGCGAGCATCTCCCATTGATTCGGCAAGGTGCGATCGTGTGGTGTACTGGTTTGCAATGCACGATTCCGGATGTGGGGGGAAATCTGGGGTGGTTGCAGCTGCGATGTTCTCTGCGCGGTAGCTCATAGCAAAAATCTGGGTGGCGATTGACGAATCGGGTGTTGATTTCGTTCTGTTTGATCGCTGGTTTAGGTGGAAATACCTAATTGGGGGCTATGTGTATTGCATAGTTTGCAGATTTCTGAATTAGCCTTTTGTTTCCCCCAAATTTTCTGTTTGATTCACTCGCAATCTATCTATCTATCTATCCTGGGTAGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGCGTGCACATCAATGATTTCTCGCGCATTGGGAGAAGGAACCAGGAAATTATTATGTGTGTGTTAAAATCTCAAATGCTTCCTTCCTTCTTTGCAGGTGAGACACCAATACTTCTCGCCGCATGTGACGGGGACATTAATGTTTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATACCTAACGCGGGGGGCTTCATGCCGCTGCACTACGCAGCAGAGTACGGTGCGTTCCATGCTTTTCAGTTCACTCGCCATCTGTGGGATTTAAGGATGGTTCTTGCATACAAGTTGTTAGGAATCCTGTGTGCTAACATCGTTGTGCCCTCAGGGCATGTTGATGTTGTGAGACTATTGCTGTCCAAAGGAGTTCATGTGGATCCTCTGAATTATAGTGGGGCCCCGCTGCACTTGGCTACCGCAAATGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGTGCTGATGTAAGTGGTTGATCTCGTGGTCACCTAATTAAATGGACCACAATAAGTTGAAACGATGAATGGGGCAAAAAAAATTTTGTCCTGATGATGATATTTGTTTCAGAAGCTGGAGCAGAAACTTGGGCAGGCAGTGGGCCCATTTTCTCTATTGTTATTTTGTGGTCTGACTAGTTCTTGAAATTGTGATTTATTCCCTTTTCAGCCCAACAGAGTTGTCAACCATGTCCTTTCACCACTCGTTGTTGCTTGCTGCAGCCACTCCTTGAAATGCATGAAGTTACTGATCAAGGTCTAGTATTATATTGAACCAATTTGATGTATTCTCATATGTTTTTTCTGGTAAAATGTGTCATGGTTTTCAAAAGAAGGTTGGGAGGAGATTGTAGACAGTAGAACAGTTATGTTGCTTTGATATAATTAGCTGTCTTTTGAACTACAAGTTGAAAGCATTTCTCTATTGCTTTGCGATGTCTATTTTCAATTCAATAGGCTGGTGCTGATGTGAATGATAGAAGTTCTACTGGACCAAGAACGACCCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATTGTCAAAATCTTGCTAGAGGCTGGAGCTGACCCTAACATTCGTAACGAGGTAACTGCTCCTCAGATCATGGCTCATACTACCTTTTGACATTATGATTTTAAGGTCATGTTATCTACCTTGAACATTTTCGGTGATCGGATATTTGGATGGTAATGTAAAGCTAAGGTCTGTCGAGAGCGGAAGCTCATTGTATAGTTTGATCATTTGCCAACTCAATACCGTATGTATGTACTCTAATACATCTGTTTGGATTTGCCTCTGACAACTGTCAATCAGGCATTTCATGATTTAAAGCTCTAGTAGATAGTAACATTTTTTACTGATCCATGGTTTGGAATTCTGAACTCATAGTTCATATAACAGATTTACTTAGGTCCAGAACATACTATTGTACTTCCGTTGTTAAGTATTCATCTAGACTCACCCACTAGTACTTGATCACACTGACTAGGATTATGAGGGAATAATTTCTCTAGCTTTTCTTCAAGTTCTGCTCTGTTCATTTAACAGTTTCACCTTTCTTGCAACCGTTCTCCCAGAAGAATCTCGTAGTGTTGAGCTCATCTTTTGTATCCTCAATCTTAAGTAACTTTGGTCGGCCTAGCTTGGGCCGGCCTGGCAAATCTTTTTTACTGTCCATCTTGGGTTGTTTTCCATCTTCCATTTTGTAATGCCTGCAAGTTAATACACTTGTTGCAGGATGGGAGGATTCCTATCATGATGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGGACAAAACCAATTCCATGTCTGCCAGATTGGAGTGTTGATGGGATAATTAGAACTATGAGATTCACACGTACCGAACCTGAGGTATCTGTCTGATTACTTACTTTACTCCAATATAGCATGTATTAGCTTATTAACTACTCTATCCATCCCAAAATATAGCAGCTTCTAGCATTCAAAATTTGTCCCAAAATATAACTTCTCTGCCTACATTCTCTTCTCAACCAATCACAACCTTTCTCCTTTCAATTTCTCTGTCTACTTCCTCTTATCAACCAATCACAATTCACAACATTCGCACATTTAATTCCACCTACTTCCTTAATACCTATGTCCAGCACTAAAAATCCTTAATTCCAACCACATAATATTTTTCTAGTAGACTGCTATAATCCATGGACATATTCATGAGCTGTGTTTACACCCATGGACATATTCATGAGTTGTCCTGGACCCTTTATTTTTCTAATCCGAGTTCGCAAGTTAATAGAGAAACACCTTACTCTAATTGAAGTGATTTAGAACTAGGAAGAGTGGTTATTTTGCAAACTACAACATGCTGCATGCTGTAGGAACTTTGTCATACCTCATATGACACATACTTTGCATAATGGGACATGCTATTTGTTATAGGATGCAGTTCCTGTGGAAATACTAGTATCTGATTCGAAGTTAAATGCCAAGGAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTACACCAAGGTAAATGCATGACACAATTTTGTGTCTTCTTGTACAGCTTTGGATTAATTTAGAGGTTTCTTCATCAGTTCCATTACCCTGTTCTCTTTTCATGATTGTTAAGAAGACAAGTAAAAAAATCTACCCAAAATTATTCTTGAAAAATGAAAAATGAAAAATAGCTTTGGATTATATTTATAACAGTACGAGGTTGCACAACAAATAACTACTTCTAATACGTCAAGTACATGAAAAATGGCCGGGGTTTCAGTTTTCCTCATAGCCGTACAACTTGTTTGCTGAACAATACTGCACAACATACGTGGTACACCAGTAAGTTCTTGTCAAAAGACATGCATCAGTAGCCGTCATTGTCATCTCTATCAGGAAACTAATCACAGTGCATTTCACATGTTAATGGCATGGTATATTATCTTAAATGAAAAGGGATAAACACTGTGCTCCATAACACGTTTGATCCATCCAAGTTTACTGCAAACAACCATGCGAAACAACGCTTTGCTGGGCGTGCATGCAGGCACTGGAAAAAGCCCCACTTGATGCCACCTTGTTCGCCAACCGCAGCCTCTGCTGGCTGCGGCTGCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGGTGTAGCTCCATCGTCAGAGTTTCCACTCTTGCAATCTAGTCGCATTAGTTTGTACACTTTGTGCCTACCTCGCTCTTGTGGTTGGCATTTACCTCTGTTATGCACAGAACTACAGAGAAGCGGCGGCGGCTTTCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGGTAATGATGCTATCATCTTCCTTTTGTTGCTGACTGGAGTAATATAATCCATGGGGCATTAGCATCAAAACAGGAAAGGAGCAGCATATTTTGACTCTAACCTTCTTGCCTGTGAAAGCAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGACTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGTTTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAGCTGCACTTGTCTTCCCTTTGTGTGCGACTCTAATGCAAGCGCAGACTGGCAGCATGATATTTGTATATGATATATGTGAAGTCCGGCAGTTTCAGTATTCAGTAATTTGGGTTGCTATAAAAAAAAAGAAATGATAGCAATCAACCGAAACAA More
CDS seq		ATGGCCTCCTCCCCCTCCGCCGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTCCTGTGTGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGAGACACCAATACTTCTCGCCGCATGTGACGGGGACATTAATGTTTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATACCTAACGCGGGGGGCTTCATGCCGCTGCACTACGCAGCAGAGTACGGGCATGTTGATGTTGTGAGACTATTGCTGTCCAAAGGAGTTCATGTGGATCCTCTGAATTATAGTGGGGCCCCGCTGCACTTGGCTACCGCAAATGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGTGCTGATCCCAACAGAGTTGTCAACCATGTCCTTTCACCACTCGTTGTTGCTTGCTGCAGCCACTCCTTGAAATGCATGAAGTTACTGATCAAGGCTGGTGCTGATGTGAATGATAGAAGTTCTACTGGACCAAGAACGACCCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATTGTCAAAATCTTGCTAGAGGCTGGAGCTGACCCTAACATTCGTAACGAGGATGGGAGGATTCCTATCATGATGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGGACAAAACCAATTCCATGTCTGCCAGATTGGAGTGTTGATGGGATAATTAGAACTATGAGATTCACACGTACCGAACCTGAGGATGCAGTTCCTGTGGAAATACTAGTATCTGATTCGAAGTTAAATGCCAAGGAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTACACCAAGGCACTGGAAAAAGCCCCACTTGATGCCACCTTGTTCGCCAACCGCAGCCTCTGCTGGCTGCGGCTGCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGAGAAGCGGCGGCGGCTTTCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGA More
Protein seq		MASSPSAVVLQAALDGDLHLLCEMAKKLDLRGFKDMNGRNALHLAASYGHLEICKFLVEESGLDVNSGSHRGETPILLAACDGDINVLIYLLDHGGDPAIPNAGGFMPLHYAAEYGHVDVVRLLLSKGVHVDPLNYSGAPLHLATANDHDQVAKVLLEHGADPNRVVNHVLSPLVVACCSHSLKCMKLLIKAGADVNDRSSTGPRTTPLVLAVDDGSADIVKILLEAGADPNIRNEDGRIPIMMAAARGQRELVEILFPRTKPIPCLPDWSVDGIIRTMRFTRTEPEDAVPVEILVSDSKLNAKEAFAEGEYITAIYFYTKALEKAPLDATLFANRSLCWLRLREGDVALLDARRCKALRPGWSKAWYREGAALSLLKNYREAAAAFTEALKLDPENYEIKIALREALECRKRAARSEEDKNP
Function		Ankyrin-1 [UniProtKB/Swiss-Prot:Q02357]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os12g40770	LOC_Os12g40770.1	Chr12	25236011	25240748	+	MSU_osa1r7
CDS seq	ATGGCCTCCTCCCCCTCCGCCGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTCCTGTGTGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGAGACACCAATACTTCTCGCCGCATGTGACGGGGACATTAATGTTTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATACCTAACGCGGGGGGCTTCATGCCGCTGCACTACGCAGCAGAGTACGGGCATGTTGATGTTGTGAGACTATTGCTGTCCAAAGGAGTTCATGTGGATCCTCTGAATTATAGTGGGGCCCCGCTGCACTTGGCTACCGCAAATGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGTGCTGATCCCAACAGAGTTGTCAACCATGTCCTTTCACCACTCGTTGTTGCTTGCTGCAGCCACTCCTTGAAATGCATGAAGTTACTGATCAAGGCTGGTGCTGATGTGAATGATAGAAGTTCTACTGGACCAAGAACGACCCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATTGTCAAAATCTTGCTAGAGGCTGGAGCTGACCCTAACATTCGTAACGAGGATGGGAGGATTCCTATCATGATGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGGACAAAACCAATTCCATGTCTGCCAGATTGGAGTGTTGATGGGATAATTAGAACTATGAGATTCACACGTACCGAACCTGAGGATGCAGTTCCTGTGGAAATACTAGTATCTGATTCGAAGTTAAATGCCAAGGAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTACACCAAGGCACTGGAAAAAGCCCCACTTGATGCCACCTTGTTCGCCAACCGCAGCCTCTGCTGGCTGCGGCTGCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGAGAAGCGGCGGCGGCTTTCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGA More
Protein seq	MASSPSAVVLQAALDGDLHLLCEMAKKLDLRGFKDMNGRNALHLAASYGHLEICKFLVEESGLDVNSGSHRGETPILLAACDGDINVLIYLLDHGGDPAIPNAGGFMPLHYAAEYGHVDVVRLLLSKGVHVDPLNYSGAPLHLATANDHDQVAKVLLEHGADPNRVVNHVLSPLVVACCSHSLKCMKLLIKAGADVNDRSSTGPRTTPLVLAVDDGSADIVKILLEAGADPNIRNEDGRIPIMMAAARGQRELVEILFPRTKPIPCLPDWSVDGIIRTMRFTRTEPEDAVPVEILVSDSKLNAKEAFAEGEYITAIYFYTKALEKAPLDATLFANRSLCWLRLREGDVALLDARRCKALRPGWSKAWYREGAALSLLKNYREAAAAFTEALKLDPENYEIKIALREALECRKRAARSEEDKNP More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.000000	0.0	0.373413

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_12g0599900	RBH	0.000000	0.0	1.495135
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os12g40780	RBH	0.087377	0.103669	0.628659
Nipponbare \| IRGSP 1.0 \| RAP-db	Os12g0599900	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_12g0019700	RBH	0.000000	0.852965	1.608590
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_12g0019820	SBH	0.000000	0.0	1.243484
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_12g0020140	SBH	0.148709	0.0	1.274304
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_12g0019450	SBH	0.000000	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_12g0019060	SBH	0.207620	0.000000	5.677880
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_12G0337600	SBH	0.965214	0.418421	17.753697
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_12g0018930	RBH	0.033913	0.000000	0.128630
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_12G0367800	RBH	0.980835	0.0133815	20.4726635
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_12g0019180	RBH	0.000000	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_12g0019410	SBH	0.000000	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_12g0019320	SBH	0.504782	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_12g0019350	RBH	0.000000	0.0	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_12g0019540	SBH	0.000000	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_12G019190	RBH	0.0	0.0	0.427780
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_12g0018920	RBH	0.0	0.0	0.891442

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.