Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g38660 | OGI:12056760 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:23750274-23750582 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACTTGAAAGCGCCAACGTCTTCCTCGTCTCCCTTCCGGCTGGCCCTGAAGTACTCCTTCGGGTTACCCTCGAACTTGTCGCGGGAGATCATCACCTTGCCGTCAAAGCCCGGCGCCTTCATTGTCCGGGTCGTCGGCGGATCATCATCTGCCGTCTTGTCCGGGTCTCCACTGCTCTCCCCAATCGCCGACAGCAGGAACAAGGTGCCGGCGGCGGCGGCGGCGATGAAGGCGGTGACGCCGAGGATGCGGCGGCGGGTCGAAGGCTTGTCCGTCTTCTCCTTCTCCTTTACCTCGTTCCTCTTCAT |
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| CDS seq | ATGAAGAGGAACGAGGTAAAGGAGAAGGAGAAGACGGACAAGCCTTCGACCCGCCGCCGCATCCTCGGCGTCACCGCCTTCATCGCCGCCGCCGCCGCCGGCACCTTGTTCCTGCTGTCGGCGATTGGGGAGAGCAGTGGAGACCCGGACAAGACGGCAGATGATGATCCGCCGACGACCCGGACAATGAAGGCGCCGGGCTTTGACGGCAAGGTGATGATCTCCCGCGACAAGTTCGAGGGTAACCCGAAGGAGTACTTCAGGGCCAGCCGGAAGGGAGACGAGGAAGACGTTGGCGCTTTCAAGTAA |
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| Protein seq | MKRNEVKEKEKTDKPSTRRRILGVTAFIAAAAAGTLFLLSAIGESSGDPDKTADDDPPTTRTMKAPGFDGKVMISRDKFEGNPKEYFRASRKGDEEDVGAFK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g38660 | LOC_Os12g38660.1 | Chr12 | 23750274 | 23750582 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAGAGGAACGAGGTAAAGGAGAAGGAGAAGACGGACAAGCCTTCGACCCGCCGCCGCATCCTCGGCGTCACCGCCTTCATCGCCGCCGCCGCCGCCGGCACCTTGTTCCTGCTGTCGGCGATTGGGGAGAGCAGTGGAGACCCGGACAAGACGGCAGATGATGATCCGCCGACGACCCGGACAATGAAGGCGCCGGGCTTTGACGGCAAGGTGATGATCTCCCGCGACAAGTTCGAGGGTAACCCGAAGGAGTACTTCAGGGCCAGCCGGAAGGGAGACGAGGAAGACGTTGGCGCTTTCAAGTAA
More
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| Protein seq | MKRNEVKEKEKTDKPSTRRRILGVTAFIAAAAAGTLFLLSAIGESSGDPDKTADDDPPTTRTMKAPGFDGKVMISRDKFEGNPKEYFRASRKGDEEDVGAFK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.659930 | 0.762429 | 5.525693 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0575400 | RBH | 1.036764 | 0.910272 | 20.528418 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38720 | RBH | 0.619361 | 0.212356 | 4.992268 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0576100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0018300 | RBH | 0.959325 | 66.275398 | 6.551069 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018410 | RBH | 1.423316 | 124.116203 | 16.624321 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018750 | SBH | 3.515543 | 266.375000 | 27.312786 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017660 | SBH | 0.0 | 0.000000 | 9.312373 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0315300 | RBH | 81.2183765 | 401.015289 | 49.144667 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017510 | SBH | 0.126494 | 0.699878 | 0.047545 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0346400 | SBH | 2.4637655 | 77.026474 | 3.8576025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017740 | SBH | 0.545876 | 4.339414 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018010 | SBH | 0.553156 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017930 | SBH | 0.000000 | 572.684937 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017980 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018140 | SBH | 0.0 | 8.076797 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017900 | SBH | 0.268006 | 16.603456 | 12.587317 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017570 | SBH | 2.437166 | 149.713379 | 39.869953 |
