Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0017980 | OGI:12056760 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:22821960-22822355 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacttgaaagcgccaacgtcttcctcgtctcccttccggctggccctgaagtagtccttcgggttaccctcgaacttgtcgcgggagatcatcaccttgccgccaaagcccggcgccttcattgtccgggtcgtcggcggatcatcatctgccgtcttgtccgggtctccactgctctccccgatcgccgacagcaggaacaaggtgccggcgacggcggcggcggcgggtcgaaggcttgtccgtcttctccttctccttctcctcgttcctcttcatctcgcggcgagagagagagagagagagagagagagaggaggggaacagtgggtaactGgctacGgagattggagaggcctcagagctcgcgatgggacccacatggccacagccat |
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| CDS seq | atggctgtggccattggagacccggacaagacggcagatgatgatccgccgacgacccggacaatgaaggcgccgggctttggcggcaaggtgatgatctcccgcgacaagttcgagggtaacccgaaggactacttcagggccagccggaagggagacgaggaagacgttggcgctttcaagtaa |
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| Protein seq | MAVAIGDPDKTADDDPPTTRTMKAPGFGGKVMISRDKFEGNPKDYFRASRKGDEEDVGAFK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0017980 | OsLiXu_12g0017980.01 | Chr12 | 22821960 | 22822355 | - | NAM | ||
| CDS seq | atggctgtggccattggagacccggacaagacggcagatgatgatccgccgacgacccggacaatgaaggcgccgggctttggcggcaaggtgatgatctcccgcgacaagttcgagggtaacccgaaggactacttcagggccagccggaagggagacgaggaagacgttggcgctttcaagtaa |
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| Protein seq | MAVAIGDPDKTADDDPPTTRTMKAPGFGGKVMISRDKFEGNPKDYFRASRKGDEEDVGAFK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0575400 | RBH | 1.036764 | 0.910272 | 20.528418 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38670 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0575400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0018300 | RBH | 0.959325 | 66.275398 | 6.551069 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018380 | RBH | 0.765613 | 63.639694 | 8.653819 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018750 | RBH | 3.515543 | 266.375000 | 27.312786 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017660 | RBH | 0.0 | 0.000000 | 9.312373 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0315800 | RBH | 276.709778 | 1426.622986 | 203.6891785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017540 | RBH | 0.745227 | 3.292557 | 0.205237 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0346400 | RBH | 2.4637655 | 77.026474 | 3.8576025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017760 | RBH | 3.079892 | 10.449759 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018010 | RBH | 0.553156 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017930 | RBH | 0.000000 | 572.684937 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018140 | RBH | 0.0 | 8.076797 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017900 | RBH | 0.268006 | 16.603456 | 12.587317 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017570 | RBH | 2.437166 | 149.713379 | 39.869953 |
