Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g36330 | OGI:12057790 | 11/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:22244764-22246792 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATTCACAAAGCCCATCTGGAGGATCATACTGACTTGAATGTATGCACAAGGCTCCATTTGTGAACAAGCCTCGAAGCTTCCGCTTGAATCCGTCATATGTGCAGTAGGGGAAATTTAACCATTGTATAACACTTGAAGGTTTCATAGCACCCATCTGCATATAGCACAAACTGAACCTCACAACAGTAGCTACGTATATCATTTTTGTCTCTGCAATAACACAACTGAATCCATTATCTAAAAAAAAATAACACAAGCTGAATTCCTCAACCAAAATTGATTCCCTCCATGATAAAACTCAGATTTAATCACATCTTCTTGAGGCGGTGGCCAGCATGGCAATTCCTTTAGAAACTGCTCAACTCCATTCACGTACAGTAATAGTGTGCTCTCCAATCGGAACAAGTACCACACTTTGCATCGATTACACGCAAACGATGACCATGGTTCTGGCCATAGCTCACATATGCTACCCGTTAGCTTGTTCGAAGGAGGAGGTGGCCATGGATTCCTCTCAGCATACTCCATTAGTGGCTAACATAGAGTCATAAGTCTGATAGAATTGTCGCTAGCACAACTTGATTTGACAACAAGGATGACTGACGTATTCATAATGGTCAGAGGCAGAGTTGGAATGATGCTATGCCCATTCATAGCTGTAATGGTAGGGAACACGACCACAGGTTGGTTGGCGCTACCATTGACATCGAGGCCCAAAGTCGAACACTTGGCATGCGTCGCTATGGAACAATGAGGGTTGTCAATGTAGATGACACTGGTTTCATCCTCGCCAACCAACAACTCCATGGAGGCCATAGAAGTAGTGGCACATGAAACCCCCACAGCCACGGTGAGGTCTAGCATGATGTCAGGGCTAGAACAATTCGAGCACTTGGCGGGCGTGACCTTGGGTGAGTCGTTGGTGACGATGCAGGGGGCGTGGCCCTTGTCCTTGTTGTCTCCTAGCTCCCAGGCAGCCGTTGGAGCAAGCACCTCACCAATGTGACTTGAATTCGCCATCACCCAAGTGAAGTTGTTGTTGGGGCATTTTGTCAAACACTTGGTCGGTGTTGGAGGAGGTGGTGCCATGGGTGTTGGAGATGATGAAGCCTTGAGGATGGCGGTGGTTGTCCTGATGGCAGCAATCGTCACCTCGGTAGCCTTGCTCCTACAAGCCTCTATCTCCTCCAACTTCTGTAGTATTTGATTGAACTTCTCCTCTTGCATGCACTTGGCCTCCATCAACTCAAGCTTCCCAAGATTCTGATCTAAAGATTCGTCCATGGATATTCCCTCCTTGTTCATGGTGGATTTGATGGAAACGGGCTCTGATATCCTTTCATCGTCCTTAAACACCTTATGTTGGTTTGGTATTCTATCGAACAGGTTGTGTGCGCTAGATTCATGAGCACCTCACTTGCCCAAATCTTCCTCCACCTTGCACTGCTGCCTTCCCAACACCTGCATGACGAGAAATCCCACGAACCGAGCGGCTCTGATACTAGATTGTTAGGAACCCACTTCTTCCAATTCAATAGCAAGGATCCACCATACAAGCAACAATTGTTTTAGGGGGAAAAGAGAAGAAGAAACTATGGAATACAAGTTTTGGAAGCTTCTAGAACTAGCAGTGGAAGCTGGAGGTAGGAAGAGATCGGTAGAGAAGATAGATCGTCGAGGTTCTAGCCTAGAACCTTGACGCCGTTGCCGCCGTGGCTGAAGCCGCCGATGCCTGTTTGATCTGTTCAATGTTTGTTGTAGGAGCAGCAGCCATCCTTTTGTTCCCAGTCGCTTGGGCTAGCCTGGGCTTGCTCTGGAGAATGCATGGTCCATACTGCATGCGGCCCAATAGAGCTCCTAACAAGGTAGCGGGACGTCACGTCTCTTTTGAAGACGCCTTGGTCGGTCTTGAGGAAGCTTGCGAGCATCGTCTTCTCACACGCCGCCATTTGGTTTTCAAAGTCTCGCCACTCCTCCTTGGTCCAGTCCTCCTTGGTGAGCTTGTCGATCTCCTTCCCACTCGTCAT
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| CDS seq | ATGACGAGTGGGAAGGAGATCGACAAGCTCACCAAGGAGGACTGGACCAAGGAGGAGTGGCGAGACTTTGAAAACCAAATGGCGGCGTGTGAGAAGACGATGCTCGCAAGCTTCCTCAAGACCGACCAAGGCGTCTTCAAAAGAGACGTGACGTCCCGCTACCTTGTTAGGAGCTCTATTGGGCCGCATGCAGTGTTGGGAAGGCAGCAGTGCAAGGTGGAGGAAGATTTGGGCAAAATACCAAACCAACATAAGGTGTTTAAGGACGATGAAAGGATATCAGAGCCCGTTTCCATCAAATCCACCATGAACAAGGAGGGAATATCCATGGACGAATCTTTAGATCAGAATCTTGGGAAGCTTGAGTTGATGGAGGCCAAGTGCATGCAAGAGGAGAAGTTCAATCAAATACTACAGAAGTTGGAGGAGATAGAGGCTTGTAGGAGCAAGGCTACCGAGGTGACGATTGCTGCCATCAGGACAACCACCGCCATCCTCAAGGCTTCATCATCTCCAACACCCATGGCACCACCTCCTCCAACACCGACCAAGTGTTTGACAAAATGCCCCAACAACAACTTCACTTGGGTGATGGCGAATTCAAGTCACATTGGTGAGGTGCTTGCTCCAACGGCTGCCTGGGAGCTAGGAGACAACAAGGACAAGGGCCACGCCCCCTGCATCGTCACCAACGACTCACCCAAGGTCACGCCCGCCAAGTGCTCGAATTGTTCTAGCCCTGACATCATGCTAGACCTCACCGTGGCTGTGGGGGTTTCATGTGCCACTACTTCTATGGCCTCCATGGAGTTGTTGGTTGGCGAGGATGAAACCAGTGTCATCTACATTGACAACCCTCATTGTTCCATAGCGACGCATGCCAAGTGTTCGACTTTGGGCCTCGATGTCAATGGTAGCGCCAACCAACCTGTGGTCGTGTTCCCTACCATTACAGCTATGAATGGGCATAGCATCATTCCAACTCTGCCTCTGACCATTATGAATACGTCAGTCATCCTTGTTGTCAAATCAAGTTGTGCTAGCGACAATTCTATCAGACTTATGACTCTATATAATGGATTCAGTTGTGTTATTGCAGAGACAAAAATGATATACGTAGCTACTGTTGTGAGGTTCAGTTTGTGCTATATGCAGATGGGTGCTATGAAACCTTCAAGTGTTATACAATGGTTAAATTTCCCCTACTGCACATATGACGGATTCAAGCGGAAGCTTCGAGGCTTGTTCACAAATGGAGCCTTGTGCATACATTCAAGTCAGTATGATCCTCCAGATGGGCTTTGTGAATAA
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| Protein seq | MTSGKEIDKLTKEDWTKEEWRDFENQMAACEKTMLASFLKTDQGVFKRDVTSRYLVRSSIGPHAVLGRQQCKVEEDLGKIPNQHKVFKDDERISEPVSIKSTMNKEGISMDESLDQNLGKLELMEAKCMQEEKFNQILQKLEEIEACRSKATEVTIAAIRTTTAILKASSSPTPMAPPPPTPTKCLTKCPNNNFTWVMANSSHIGEVLAPTAAWELGDNKDKGHAPCIVTNDSPKVTPAKCSNCSSPDIMLDLTVAVGVSCATTSMASMELLVGEDETSVIYIDNPHCSIATHAKCSTLGLDVNGSANQPVVVFPTITAMNGHSIIPTLPLTIMNTSVILVVKSSCASDNSIRLMTLYNGFSCVIAETKMIYVATVVRFSLCYMQMGAMKPSSVIQWLNFPYCTYDGFKRKLRGLFTNGALCIHSSQYDPPDGLCE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g36330 | LOC_Os12g36330.1 | Chr12 | 22244764 | 22246792 | - | MSU_osa1r7 | ||
| CDS seq | ATGACGAGTGGGAAGGAGATCGACAAGCTCACCAAGGAGGACTGGACCAAGGAGGAGTGGCGAGACTTTGAAAACCAAATGGCGGCGTGTGAGAAGACGATGCTCGCAAGCTTCCTCAAGACCGACCAAGGCGTCTTCAAAAGAGACGTGACGTCCCGCTACCTTGTTAGGAGCTCTATTGGGCCGCATGCAGTGTTGGGAAGGCAGCAGTGCAAGGTGGAGGAAGATTTGGGCAAAATACCAAACCAACATAAGGTGTTTAAGGACGATGAAAGGATATCAGAGCCCGTTTCCATCAAATCCACCATGAACAAGGAGGGAATATCCATGGACGAATCTTTAGATCAGAATCTTGGGAAGCTTGAGTTGATGGAGGCCAAGTGCATGCAAGAGGAGAAGTTCAATCAAATACTACAGAAGTTGGAGGAGATAGAGGCTTGTAGGAGCAAGGCTACCGAGGTGACGATTGCTGCCATCAGGACAACCACCGCCATCCTCAAGGCTTCATCATCTCCAACACCCATGGCACCACCTCCTCCAACACCGACCAAGTGTTTGACAAAATGCCCCAACAACAACTTCACTTGGGTGATGGCGAATTCAAGTCACATTGGTGAGGTGCTTGCTCCAACGGCTGCCTGGGAGCTAGGAGACAACAAGGACAAGGGCCACGCCCCCTGCATCGTCACCAACGACTCACCCAAGGTCACGCCCGCCAAGTGCTCGAATTGTTCTAGCCCTGACATCATGCTAGACCTCACCGTGGCTGTGGGGGTTTCATGTGCCACTACTTCTATGGCCTCCATGGAGTTGTTGGTTGGCGAGGATGAAACCAGTGTCATCTACATTGACAACCCTCATTGTTCCATAGCGACGCATGCCAAGTGTTCGACTTTGGGCCTCGATGTCAATGGTAGCGCCAACCAACCTGTGGTCGTGTTCCCTACCATTACAGCTATGAATGGGCATAGCATCATTCCAACTCTGCCTCTGACCATTATGAATACGTCAGTCATCCTTGTTGTCAAATCAAGTTGTGCTAGCGACAATTCTATCAGACTTATGACTCTATATAATGGATTCAGTTGTGTTATTGCAGAGACAAAAATGATATACGTAGCTACTGTTGTGAGGTTCAGTTTGTGCTATATGCAGATGGGTGCTATGAAACCTTCAAGTGTTATACAATGGTTAAATTTCCCCTACTGCACATATGACGGATTCAAGCGGAAGCTTCGAGGCTTGTTCACAAATGGAGCCTTGTGCATACATTCAAGTCAGTATGATCCTCCAGATGGGCTTTGTGAATAA
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| Protein seq | MTSGKEIDKLTKEDWTKEEWRDFENQMAACEKTMLASFLKTDQGVFKRDVTSRYLVRSSIGPHAVLGRQQCKVEEDLGKIPNQHKVFKDDERISEPVSIKSTMNKEGISMDESLDQNLGKLELMEAKCMQEEKFNQILQKLEEIEACRSKATEVTIAAIRTTTAILKASSSPTPMAPPPPTPTKCLTKCPNNNFTWVMANSSHIGEVLAPTAAWELGDNKDKGHAPCIVTNDSPKVTPAKCSNCSSPDIMLDLTVAVGVSCATTSMASMELLVGEDETSVIYIDNPHCSIATHAKCSTLGLDVNGSANQPVVVFPTITAMNGHSIIPTLPLTIMNTSVILVVKSSCASDNSIRLMTLYNGFSCVIAETKMIYVATVVRFSLCYMQMGAMKPSSVIQWLNFPYCTYDGFKRKLRGLFTNGALCIHSSQYDPPDGLCE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016640 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016770 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017110 | RBH | 0.0 | 0.0 | 0.583056 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015960 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0292100 | RBH | 0.0927085 | 0.079892 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018730 | SBH | 0.245922 | 0.458318 | 0.901623 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0324200 | RBH | 0.0880925 | 0.030468 | 0.7591045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018970 | SBH | 0.077352 | 0.082969 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019200 | SBH | 0.352914 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019120 | SBH | 2.278904 | 11.002890 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016350 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016590 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018970 | SBH | 0.239696 | 1.359034 | 1.077144 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016070 | RBH | 0.0 | 0.0 | 0.0 |
