Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g29680 | OGI:12048720 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:17701444-17706118 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAAATTGCCAAACAGCTAGATTGTTCACCCTGATTATGCAAATAACAACTTATTAGCAGAACTGTCATAATCCATAATCCGCATAATAGTTGCCTCTTAGATGCTCATATACAAAGCATAATCAATTTTTATGACATGCTAAACTTTGTGCAGTTGCGCTGTCACTTCCTCTCACCTCGTCATGTTGCCGGACTCGGCGTTCGCTGACAATAGCAGCATGTATGGCTCCATCAACGGTGTCACCTCTGCTGCTTCTGTTCCTTGAATGAAACACCTCGAATGCTGCTCTTGCATCTGAAAGTAGCAGCAAATTCAGCTTTAATTAATTTCATATGGTAGTATCATACCACTCATCTTGTTGAATTGATGAACATAAAATTGGCAAATGACTACAAACTTGCAAAATACTAATAAGATTTCAATCAAGTTTTTCAACACAAGATCGTAGCCATTTTTCTGAAGTATGTGAAGGGCCATTCACATGAAGAAAATAAGCCTTATGCCCCCCAGCTTTTGAGTCCCACACATCCCCTGAGCATTACAGGAGTGCATAGCTATGCTATAATAAAATCAAGGAAAAATCTCAGTACTCCTGACCTGACAATAGGCACATGATGACAAAAAATAGAGTAAATTATATCTATTTTAGCAGGGACGTTTATAGCTTCCATGCGCAAGAATATAATGCATAAAAATTAGAGAAAAAGATAGCAGAAAGGTATGCACAGTTGATGACGTTTGCAAGCCAATATTTATCACGAATATCACTGACACTGGTAAAAATATAGAACTCCAACCATTTGAAAATATATGCAGTTACTTTGTTCCTATTTTTAACATAAGCACTCCTGTGCCAAGAGAAAAGGTTGAAAGTAGTAATCAAAATAGTAAAACTGATGATCAGATAAAACTTAATAAATCACCACCTAAAGATTTGAATCTATTTCAGTAACACCACATATGTAGGATCGAAGTAGCTGCAAACACATAAGTGTGTGTAGACGTTGAATAGCATCATCAAACTTCAATTTAACTTTGCCTCAACTCAAGTGCAATTGCAGTATGTCATGCAAACATCACCAAAGATTGCCATGCAAATATCACTGAAAACTGATCTAATACCAGCATCTGTTGAGCTTTAATTTGATTTAGGTCATAATAAATAAATTTGAGGTGAAGTGATGAATATCATTGGCAGAAAAAAAAAACAATCTTAAGACCATCAACAATTATAATATGGTCCTTACAGTACATATCTCACGAACATTTGTCTGAATTTTTTGTGTGCAGGGACTGAATGAACATCTATGTGACATTTTTTTTACATCTATGAAGCAACAATTCAAGGAGAATCACACAATTTTGGCAGAATGTAATTAGCGAAATCTTTTAAAAGTAACGAACTAACCAGCAGGCTGGGGCTGCAACCACCACGACGGGTTGGTTGGTGTGGGGAAGGGGGAGCCTGAATCTTCCACTGTTACAGAGTTATAGGCATTTTAGCAAGCGTACCGATGGCTAGCATCACGGCTTAACCATACCACAAATAGGGAAGGAAAATCAATGCAGGAACACTGTGCAAATCAATTATAATCACTGAATGGTACCTGCGTTTGCAGTGCAAATTAGATTCAGAGAAATACCTGCCCCCACGCTGTGGACGGGAAGTCGAGGGGAACTTGGGCGCCGATGGTAGTTTGGGGCCAATAGGATTTCTATGCCACAGCCAATGGAACCTGCATCCGATAGGAGCCCACCGGCCGATGGCTGCCACTGTCACCGATGGGAGCTGGCGCCGCCGCCGATAGAAGCTCTGCACATTTGCAGGTTTCATTGATCATGAGGCCAGCATCATATTCCAAGCAGTAAAAAATAGGCTAAGAAAGTAGTATAACCATTCTAAGCCCCTGAATTGTTGTAGGATTAACAAAATTAACAAACAGCAGGTGCATTTATAACTAAGAACACAACAGTATAAAACTCAAGAAGAGATCTATATAACATCAAGTTATCAAAACTTACCTTCAAGAAAAAAAAATGTTATCAAGACTTATATAGGTCCATTCAAGAAGCTCATACTGACTGCAAAACAGTCCACATAAATCATAAAATTGATTTTGTTGCAACAAAAAGGGAAAGAACAAATTGCACTATCTAATGGATATATAAGAGTGAGAAAAGTACTATACCATGAAACCAGACTTCTCAGTTCCTGAATTGATAAACAAGCTGTTGCTTTTGTTATCTTCAAATTTGATTTACAGATAGTACAGCCAACTGAGGGAATCGAATTCTGGATGTCTGAAACAAAACAAATTATTGTGTTATTTATTGACAGAAGAGAATATACAATATATATTTTTGTCAGAAACTTTCAAATGATAGTACTTATGTATCACAATTCATAAGCCTAAAAACTGGAAGCGATTAAGTAAAACAGAAGTGGAATCCTGAAATATTGGACTCTTAAGGGCTCCAAAATAACTAGAAACAATGTAACAGATCTTCTACTGTAGGTTAAATATCCTTTTTTTTTTCCTGCGAGGTTTGGAACTTGAGTTTCTTGTTAGTGTGCTATGGTCATTTTGCATGCACTGACAGTTTCTCTTTTAACCAGATGGAAATTAGTCATTTTCCAGAGCATATGACTTTGGGTAAATGCAGATAGAATAGAATTTTATATTAAGGTACAACAAAGTACATTTCAAAACAAACCATGCAATAAAACAAAAAACACAACGAATTCATGCTTATGACTTAGGAAAAGTATACAAGAGTACACGACTTTTATTATTAGTCTTGTTTTTTAAGGTTTTGGGCTATACCTCTTTAACTCTTAAAGCAGACAGTGAACAAGAAAGTAGTTGTGTAATTCATGCAGCGTTATACTGTCCCGATACAAAAAGTAGTGTAGTACAGATAAGAGCAGCCCATTTCGACAATTAATAGCAAAAAGAAAAGAATAAGAAGAAACAAGAAAGTCAAACCTCCGTTTCTGAGAAGGTAGGCTACAAATATCCTTATTGTTATTGCTAAATTTTATGCAGATGAACTAAATGCAACTAGAACATCCAGTTCTGTATGTCTGAAAGAACAATGCATTTTGCATTAGTAAATTTGTTTTCAGAAAAAAAAACAAGACCACTTGAAGAAGAGTTGATTAAGAAAGATAATGCTCCCACAAACTTAGAGTAGGAACAGAAAAATCTATTGAGTTGCTAGCCTCAAATCAAAGATGCTTTTGGTTTTGTTATAGCTAGCTTACAAGGTTCTGTTGCTTTCGAAGCAGTGGAGGTTTTTGGTTCCAGCGAGATTGGCAGAGGTGGTAGACAACTTTCAGATGCTTGCTCCATGCCAAGCTGCTCTGCCTTCGTCGGGTTCTGGCTTTTAAGGGTGATGCCACTTCATCAAGTAGACGATACCAAAGAGATCAATGTTGCCTGCTCCATTGAAAAAGGGATGCTAAAAAATGATTTCACTATGGTCAGTGAATTGGTTTAGACTTACTGATTTTGGTGATTTTGGACTGTAAGTTGTAAACTCCACCACCTATTACAAGATGTTGTTATTCTTTCAGTTAAAACCGGGCAACTTACTTTTCTTTTTGAAAGAATGAAGTCATGATCAACAACTAAAACAAATAGAATGTTAGAAGAACTATTTATTTAGATAGTAGAAATTGCATTCTCCTAGCCTATAAAGAGGATCATAAAAGTAGAAACATCGAAAGCAATAAACAATAGGTCTTCATACTGTAGTTTATATGGGAGGGATTTTGCGCATACTAACCAATTCTATGTACACAACCGAAAGTACAGGTTGGAGTCTTGATGGTTGGAAATCTCTGACTTAATAGATGTAGTATAGAGTAGAATTATAAGATGCTAAAAGCAAGGTCATGTTCGGCAAGGACTCTGCACACAGCAAAAACAGAATAAGCTCATGTTGACGAGATAGGAAAAATGGAAAGAACAACAATTGGTCGGTAGAAAATGGGAAAATTGTAGACAAGGAAGTGCTTGTTACCATATGTATCCTCCCCGTCGTTCCAAGCAGGACTAAAGTGGTAAGGAAGGAAGAGAGGACTATGTGACAAATTAATACAGCAAGGACCCCTGCAAAGGCATTCATCGTCAGCATGTGCAGCTTGGAGAAACGGTAACATCAATGAGCTTGCTGTTGCCGTATTTTCTTAATTTTTGTTACAATTGAAAAATCCAATTTTGCATGTTTGAAACAATTGAACTTCTTGTATTAATTATGCATAGAAGAAGATCTATTATATAACATTGTTGTCACAAAAAATTAGAGAGAGCTATCCTGTCATAAAATAGAATGACCTCATGTTGGTGAGTTGGGAATGTGGAAATTGAGAATAGCTCCAGAGAGTGGAAAGTACCTGTTACCTCAGAGAGTTGGACTAGTCAAGAATATACTGACTAAGTATGGGCAGTCATATTGGCCAACCGACGGATCCATTTGATCCTAAAATCTTGAAAATAACTTAGCCAATGCTTAAAACCTTGGACTATTGCGCCATACATCGATCTGTTAACTTCCACATCAGCTACCATCTTCTGAACTTCCAGACTATCGGTCTCAAGGATTACCTTTGAAACACCCAATTCACTCGCTAGCTGCACTGCCTGAAGACACACCAACGCTTCTGCCAT
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| CDS seq | ATGGCAGAAGCGTTGGTGTGTCTTCAGGCAGTGCAGCTAGCGAGTGAATTGGGTGTTTCAAAGTTGTTGATCATGACTTCATTCTTTCAAAAAGAAAATGGCATCACCCTTAAAAGCCAGAACCCGACGAAGGCAGAGCAGCTTGGCATGGAGCAAGCATCTGAAAGTTGTCTACCACCTCTGCCAATCTCGCTGGAACCAAAAACCTCCACTGCTTCGAAAGCAACAGAACCTTACATCCAGAATTCGATTCCCTCAGTTGGCTGTACTATCTGTAAATCAAATTTGAAGATAACAAAAGCAACAGCTTGTTTATCAATTCAGGAACTGAGAAGTCTGGTTTCATGGTTCCATTGGCTGTGGCATAGAAATCCTATTGGCCCCAAACTACCATCGGCGCCCAAGTTCCCCTCGACTTCCCGTCCACAGCGTGGGGGCAGGAGTGCTTATGTTAAAAATAGGAACAAAATGCAAGAGCAGCATTCGAGGTGTTTCATTCAAGGAACAGAAGCAGCAGAGGTGACACCGTTGATGGAGCCATACATGCTGCTATTGTCAGCGAACGCCGAGTCCGGCAACATGACGAGGGTGAACAATCTAGCTGTTTGGCAATTTTGA
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| Protein seq | MAEALVCLQAVQLASELGVSKLLIMTSFFQKENGITLKSQNPTKAEQLGMEQASESCLPPLPISLEPKTSTASKATEPYIQNSIPSVGCTICKSNLKITKATACLSIQELRSLVSWFHWLWHRNPIGPKLPSAPKFPSTSRPQRGGRSAYVKNRNKMQEQHSRCFIQGTEAAEVTPLMEPYMLLLSANAESGNMTRVNNLAVWQF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g29680 | LOC_Os12g29680.1 | Chr12 | 17701444 | 17706118 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAGAAGCGTTGGTGTGTCTTCAGGCAGTGCAGCTAGCGAGTGAATTGGGTGTTTCAAAGTTGTTGATCATGACTTCATTCTTTCAAAAAGAAAATGGCATCACCCTTAAAAGCCAGAACCCGACGAAGGCAGAGCAGCTTGGCATGGAGCAAGCATCTGAAAGTTGTCTACCACCTCTGCCAATCTCGCTGGAACCAAAAACCTCCACTGCTTCGAAAGCAACAGAACCTTACATCCAGAATTCGATTCCCTCAGTTGGCTGTACTATCTGTAAATCAAATTTGAAGATAACAAAAGCAACAGCTTGTTTATCAATTCAGGAACTGAGAAGTCTGGTTTCATGGTTCCATTGGCTGTGGCATAGAAATCCTATTGGCCCCAAACTACCATCGGCGCCCAAGTTCCCCTCGACTTCCCGTCCACAGCGTGGGGGCAGGAGTGCTTATGTTAAAAATAGGAACAAAATGCAAGAGCAGCATTCGAGGTGTTTCATTCAAGGAACAGAAGCAGCAGAGGTGACACCGTTGATGGAGCCATACATGCTGCTATTGTCAGCGAACGCCGAGTCCGGCAACATGACGAGGGTGAACAATCTAGCTGTTTGGCAATTTTGA
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| Protein seq | MAEALVCLQAVQLASELGVSKLLIMTSFFQKENGITLKSQNPTKAEQLGMEQASESCLPPLPISLEPKTSTASKATEPYIQNSIPSVGCTICKSNLKITKATACLSIQELRSLVSWFHWLWHRNPIGPKLPSAPKFPSTSRPQRGGRSAYVKNRNKMQEQHSRCFIQGTEAAEVTPLMEPYMLLLSANAESGNMTRVNNLAVWQF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013330 | RBH | 0.000000 | 0.000000 | 0.449722 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0245800 | RBH | 0 | 0.234637 | 0.086717 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0266000 | SBH | 0.1470785 | 2.616916 | 0.592985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013020 | SBH | 0.000000 | 0.355189 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013350 | RBH | 0.204215 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013310 | SBH | 0.0 | 1.699794 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013020 | SBH | 0.128770 | 7.711901 | 0.360691 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012810 | SBH | 0.182731 | 0.0 | 0.442502 |
