Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g17420 | OGI:12026680 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:9986281-9987914 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATGGATCCTGATGCTGAACCTCCTCCTCTTCTATAGTGCACTCCCGTCTCTCCATCTCATCCTCATCCTCATCCTTTACCATATCGCTTTCCCACTTCCTTTTGATTTCTAGAGTGGGGCATCGAGGGTGGATTCTCACTGTGTTCCGAATGGTGGCTTCGGCAGCCTCAACTCTCCTTCTAGTGGCATCATCACAATCAACTGTGACACTGAGGTGCCGCAGGCTTGAAAGGTGCTCGAGCCTCAACTCGAAACCCGTATTGGACTTCGTTTCCATTGCTTTAAACCGAAGGTGTAGCATTTGGAGCTTTGGCATTGCTTCCTTTTCACACACCATGCTTAGTCCACCACCCAATTCATATTTCAATTTGAACTTCTTCAAGCACTGGAATAGTTGACTGCTGATAATCAGCCTTTCATCAGGGCCATAGAGTAAATGTAGCTCAAGCTTCAGCAGTGAGGGCAAGCCCCCAAGCACCCAAAGATCTTTCTGTTTAATGCTTCTGGCACAAATGGCAAGAAAAGACAGATTATCAAGAGATGCTATCCTCTCAGAAAGCATGCCATTCCAGGGGCCATACATTACAAGTACTTGGAGACAGGGACAGTGTCACATAATAGATCCATCAGGTAATCACCCAGGCAATCAGCACGTGAAATTACTAGTGATCGAAGACTGTGTTTACCTAACACAGTTAGAGAGGATTTCAAAGCTTCCTCATACGTTCTCATGTCATGATAACAAAGTTTTAAACTGGAATGTAGTCCAATGTGAAGCGACCTTAGCTTAGTAAGCCGCCTAAGCTCTTCCACGAATTTAATAGAGTTATAAGAGAAAGCATCTGACAGCACCTGCAAAGCTTGTAGATCTCCAACCTCATCAGGTAATTCAACATCAGAATTAACATGTAGATACAACAAATTTTGTAAATGGCCTATGGCTGCTGGAAGTTTTCCAATTTTACTTCCATGTATGTTCAGTGTTTGTAAATTTTTCAGGTCGCCAATTTTATCCGGAAGCTCAGTGATACCTTCAGAATTGATTCTCAAAAACTTTAATTGGCAAAAGAATCTGAGATATTTAATATGTTGGTTTCCTAAGCTATCACAATCCTCAAATATCAATACTCTCAGATAACGGAACTTTGGGAGATGAGGTGTTTCTTTATTTTCCCGAAAGAAGCTAAGAGAGCGAATATGTGAGCACTTGTTCATTAAATCCTGCATCACATCATTTTCCACACAGCTGGATTGGAGGGAGAGTCTGCGAATATTGCTAGAAGAACATTTATACACCTTCCCATCTACTAATGTATTGAAGTTCTCATCTTCAGACAGGGATACGATCAGCTCAAGCATTACATCATGCATTCGACATGCATTTGCGCTACCATCATAGTCGATGTTGACTGGCTGAATCATGCTTCTGTTTATAAGCTCATTAAAGTAATTCTCTGCAACTTGATACAATGCCTGATCCTTCACTTCAGGAATGAATCCTTCAGCTATCCATCTCAATAACAGATCTACTTTACTAATCCAGTAATCCTCTGGAAATATACTAAGATACAGCAAGCAAGTCTTCAGATGATATGGAAGGTCATAATAGCTAAGCAGCAGTATATCCTTCAT
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| CDS seq | ATGAAGGATATACTGCTGCTTAGCTATTATGACCTTCCATATCATCTGAAGACTTGCTTGCTGTATCTTAGTATATTTCCAGAGGATTACTGGATTAGTAAAGTAGATCTGTTATTGAGATGGATAGCTGAAGGATTCATTCCTGAAGTGAAGGATCAGGCATTGTATCAAGTTGCAGAGAATTACTTTAATGAGCTTATAAACAGAAGCATGATTCAGCCAGTCAACATCGACTATGATGGTAGCGCAAATGCATGTCGAATGCATGATGTAATGCTTGAGCTGATCGTATCCCTGTCTGAAGATGAGAACTTCAATACATTAGTAGATGGGAAGGTGTATAAATGTTCTTCTAGCAATATTCGCAGACTCTCCCTCCAATCCAGCTGTGTGGAAAATGATGTGATGCAGGATTTAATGAACAAGTGCTCACATATTCGCTCTCTTAGCTTCTTTCGGGAAAATAAAGAAACACCTCATCTCCCAAAGTTCCGTTATCTGAGAGTATTGATATTTGAGGATTGTGATAGCTTAGGAAACCAACATATTAAATATCTCAGATTCTTTTGCCAATTAAAGTTTTTGAGAATCAATTCTGAAGGTATCACTGAGCTTCCGGATAAAATTGGCGACCTGAAAAATTTACAAACACTGAACATACATGGAAGTAAAATTGGAAAACTTCCAGCAGCCATAGGCCATTTACAAAATTTGTTGTATCTACATGTTAATTCTGATGTTGAATTACCTGATGAGGTTGGAGATCTACAAGCTTTGCAGGTGCTGTCAGATGCTTTCTCTTATAACTCTATTAAATTCGTGGAAGAGCTTAGGCGGCTTACTAAGCTAAGGTCGCTTCACATTGGACTACATTCCAGTTTAAAACTTTGTTATCATGACATGAGAACGTATGAGGAAGCTTTGAAATCCTCTCTAACTGTGTTAGGTAAACACAGTCTTCGATCACTAGTAATTTCACGTGCTGATTGCCTGGGTGATTACCTGATGGATCTATTATGTGACACTGTCCCTGTCTCCAAAAGCATTAAACAGAAAGATCTTTGGGTGCTTGGGGGCTTGCCCTCACTGCTGAAGCTTGAGCTACATTTACTCTATGGCCCTGATGAAAGGCTGATTATCAGCAGTCAACTATTCCAGTGCTTGAAGAAGTTCAAATTGAAATATGAATTGGGTGGTGGACTAAGCATGGTGTGTGAAAAGGAAGCAATGCCAAAGCTCCAAATGCTACACCTTCGGTTTAAAGCAATGGAAACGAAGTCCAATACGGGTTTCGAGTTGAGGCTCGAGCACCTTTCAAGCCTGCGGCACCTCAGTGTCACAGTTGATTGTGATGATGCCACTAGAAGGAGAGTTGAGGCTGCCGAAGCCACCATTCGGAACACAGTGAGAATCCACCCTCGATGCCCCACTCTAGAAATCAAAAGGAAGTGGGAAAGCGATATGGTAAAGGATGAGGATGAGGATGAGATGGAGAGACGGGAGTGCACTATAGAAGAGGAGGAGGTTCAGCATCAGGATCCATAA
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| Protein seq | MKDILLLSYYDLPYHLKTCLLYLSIFPEDYWISKVDLLLRWIAEGFIPEVKDQALYQVAENYFNELINRSMIQPVNIDYDGSANACRMHDVMLELIVSLSEDENFNTLVDGKVYKCSSSNIRRLSLQSSCVENDVMQDLMNKCSHIRSLSFFRENKETPHLPKFRYLRVLIFEDCDSLGNQHIKYLRFFCQLKFLRINSEGITELPDKIGDLKNLQTLNIHGSKIGKLPAAIGHLQNLLYLHVNSDVELPDEVGDLQALQVLSDAFSYNSIKFVEELRRLTKLRSLHIGLHSSLKLCYHDMRTYEEALKSSLTVLGKHSLRSLVISRADCLGDYLMDLLCDTVPVSKSIKQKDLWVLGGLPSLLKLELHLLYGPDERLIISSQLFQCLKKFKLKYELGGGLSMVCEKEAMPKLQMLHLRFKAMETKSNTGFELRLEHLSSLRHLSVTVDCDDATRRRVEAAEATIRNTVRIHPRCPTLEIKRKWESDMVKDEDEDEMERRECTIEEEEVQHQDP |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g17420 | LOC_Os12g17420.1 | Chr12 | 9986281 | 9987914 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAGGATATACTGCTGCTTAGCTATTATGACCTTCCATATCATCTGAAGACTTGCTTGCTGTATCTTAGTATATTTCCAGAGGATTACTGGATTAGTAAAGTAGATCTGTTATTGAGATGGATAGCTGAAGGATTCATTCCTGAAGTGAAGGATCAGGCATTGTATCAAGTTGCAGAGAATTACTTTAATGAGCTTATAAACAGAAGCATGATTCAGCCAGTCAACATCGACTATGATGGTAGCGCAAATGCATGTCGAATGCATGATGTAATGCTTGAGCTGATCGTATCCCTGTCTGAAGATGAGAACTTCAATACATTAGTAGATGGGAAGGTGTATAAATGTTCTTCTAGCAATATTCGCAGACTCTCCCTCCAATCCAGCTGTGTGGAAAATGATGTGATGCAGGATTTAATGAACAAGTGCTCACATATTCGCTCTCTTAGCTTCTTTCGGGAAAATAAAGAAACACCTCATCTCCCAAAGTTCCGTTATCTGAGAGTATTGATATTTGAGGATTGTGATAGCTTAGGAAACCAACATATTAAATATCTCAGATTCTTTTGCCAATTAAAGTTTTTGAGAATCAATTCTGAAGGTATCACTGAGCTTCCGGATAAAATTGGCGACCTGAAAAATTTACAAACACTGAACATACATGGAAGTAAAATTGGAAAACTTCCAGCAGCCATAGGCCATTTACAAAATTTGTTGTATCTACATGTTAATTCTGATGTTGAATTACCTGATGAGGTTGGAGATCTACAAGCTTTGCAGGTGCTGTCAGATGCTTTCTCTTATAACTCTATTAAATTCGTGGAAGAGCTTAGGCGGCTTACTAAGCTAAGGTCGCTTCACATTGGACTACATTCCAGTTTAAAACTTTGTTATCATGACATGAGAACGTATGAGGAAGCTTTGAAATCCTCTCTAACTGTGTTAGGTAAACACAGTCTTCGATCACTAGTAATTTCACGTGCTGATTGCCTGGGTGATTACCTGATGGATCTATTATGTGACACTGTCCCTGTCTCCAAAAGCATTAAACAGAAAGATCTTTGGGTGCTTGGGGGCTTGCCCTCACTGCTGAAGCTTGAGCTACATTTACTCTATGGCCCTGATGAAAGGCTGATTATCAGCAGTCAACTATTCCAGTGCTTGAAGAAGTTCAAATTGAAATATGAATTGGGTGGTGGACTAAGCATGGTGTGTGAAAAGGAAGCAATGCCAAAGCTCCAAATGCTACACCTTCGGTTTAAAGCAATGGAAACGAAGTCCAATACGGGTTTCGAGTTGAGGCTCGAGCACCTTTCAAGCCTGCGGCACCTCAGTGTCACAGTTGATTGTGATGATGCCACTAGAAGGAGAGTTGAGGCTGCCGAAGCCACCATTCGGAACACAGTGAGAATCCACCCTCGATGCCCCACTCTAGAAATCAAAAGGAAGTGGGAAAGCGATATGGTAAAGGATGAGGATGAGGATGAGATGGAGAGACGGGAGTGCACTATAGAAGAGGAGGAGGTTCAGCATCAGGATCCATAA
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| Protein seq | MKDILLLSYYDLPYHLKTCLLYLSIFPEDYWISKVDLLLRWIAEGFIPEVKDQALYQVAENYFNELINRSMIQPVNIDYDGSANACRMHDVMLELIVSLSEDENFNTLVDGKVYKCSSSNIRRLSLQSSCVENDVMQDLMNKCSHIRSLSFFRENKETPHLPKFRYLRVLIFEDCDSLGNQHIKYLRFFCQLKFLRINSEGITELPDKIGDLKNLQTLNIHGSKIGKLPAAIGHLQNLLYLHVNSDVELPDEVGDLQALQVLSDAFSYNSIKFVEELRRLTKLRSLHIGLHSSLKLCYHDMRTYEEALKSSLTVLGKHSLRSLVISRADCLGDYLMDLLCDTVPVSKSIKQKDLWVLGGLPSLLKLELHLLYGPDERLIISSQLFQCLKKFKLKYELGGGLSMVCEKEAMPKLQMLHLRFKAMETKSNTGFELRLEHLSSLRHLSVTVDCDDATRRRVEAAEATIRNTVRIHPRCPTLEIKRKWESDMVKDEDEDEMERRECTIEEEEVQHQDP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0273300 | SBH | 0.314198 | 0.544434 | 0.288455 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0273300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009040 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009150 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009160 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008990 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008780 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0137400 | RBH | 0.3428235 | 3.822253 | 1.0966745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008830 | SBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0151300 | SBH | 0.116274 | 2.3399135 | 0.2849305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008770 | SBH | 0.000000 | 0.070810 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009030 | RBH | 1.772292 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008960 | SBH | 0.0 | 3.679638 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008940 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009050 | SBH | 0.017977 | 2.372043 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008810 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008660 | SBH | 0.000000 | 8.758652 | 6.816113 |
