Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g04030 | OGI:11005920 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:1675882-1682837 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGGATGCAAAGCTTCAGAATTTCCTTCGGATGCAACCAGTAATGAAACGCTCATCCTATTACATGGTGATTCCAATTTGCGAGAATAACCCACCTTCCCTGGTGCTCGCGCCCTTTATACATGCGCAGCCTTGTTTTTGATATTTACTATGCCGATTTAACCTCGAGAGCTTCACTTAGTCCATCTCCATGGCTAATCCAGTGGGATCTTCGAAGTCTTTGAGAATATCCATGCATTGCTTCAAAAATGCCTTTGCTTGCTCGCTTTTTTCCGACTCACAAAGTTCAGCAAGTTCGCCTGAGAACTTGGGCCCTTTTCTGTCAACCAATGGAAAGTCTCTATACAATTTGCTCAACTCAAGGAGACACTCGGAAGCAGCGGTGTGAACCTGAGAAGAAGTTAGTCATGAGGGGGCAATTCAAACTCAGATTGCATATCCAGAAACTGCTGGTTTGTGCAATATACAGTAGTCTAATATACTCTAGCATAGTATGTAACAATTATATTTTACATAAATCTTGGATAGCTCGTCCTTTCAAGATATAAATTATATGTTACAGTCAGTGCAAGAAACCTTGTAACTGTTTGTTCTAAAATCAGTGAAGCCAAAAACAAGCATATGAACTGTTACATAAAGAAGCAAAGCAGTAATCTGTAAACCATGTGCACCAGGGTTCATCAAACCACCAGACTAGCCACCTTTTTTTTTTCTAAAGACAAGTTCTTATTTTTCCCTGAATATTTGATGAATAATTTTGTATCATCTCTAAATAATCTATAAAAAAACTGGTGCCAAATGGTGTTATGCAATCATCAAATTTAGTATAACACCCACAACAGCTCCGTCCAGTGCAATTTCAGTTCACATGCTCCCATTGCCATAAAACATACAAGTAGTAAACTACAATATGTTTATTCATTAGAAGGAAGACAACAAATTATCTTATGGTGAAACTTTAAAAGTGCTATATGAGATTGTAATAAATATGAGCAAACACAATATAATATGAATTGGTGAGGGCTAGATATACTGATGATTACCTGAGCAATCTTAACTAAGCGTATGACATCCACAACTTTTGGTGCTGTTGAATGAAATAACTGAACGGTCAAATTAAAAGAAATTTGTCAGGAAAATGAAGAAACCAAATACTGAACTAAAGAGTACAGTTGTGTAGGACTAAACAACTATGTGATGTACCTCCTCAACCAAGTAAGTTGTTTCCTCAGGCCAAGTGTTATTACCATCTGAATTCTGGAATTTATAGCACAACTCTTTGATACACAAGAACGATGACAACTTAACTGCACATAGAAATCCATAAAAAAAGCATCAATGATAGTGGTGATGTATCAAATAAGTGAGATTCAAAAACAGTTGCATAGAATTATAATAGATCTTGCATACAAGATACATACTCTGCCAACTCTCCTCGGGGGATAGAGAATTTAAAATAATTTCCAGGATATTCTTCCTTTGGTTGATAATATCTTGCAGGAAAGCAACAGTGATTGAAGATGCTACACAGTTGAGCACCTTATCAAGAGAAACAGAAACACCTTCAGTTTCATCTTGCTCTGCAGAAGACAGTAATACATAAAAAATAAAGGAGGATAAGTGGCTTTTGAAGTCATGCACGTATGCTGCATTAAGGGCAACAATGTATAGTTCTAAAGTTGTCTTGTTAAGCCGATCCCATCAAGGTTTTCAAACATTGTGTTGTGATGGCAACTATCAGTACTATATCATATTTATGTGATAAAGAATGAGATAATAAAATAGAAGTTCTAGTATTCATTTACAAGATGTTTCATCCAGCATTGACATTAGTTGAATGCAGTGAGGGGCTGGAATTAATGACTGACCAGCACTAGAGGATGCAGTGAGTGAAGATGAGTTCCTTGTTTTACAAATGACAGATCGATTAGAAACCTCATACAGCATAGGAAAAACAATATTGAAGAATCCTGGATCTTTGAATGCTGTAATCACCTGAAAAGTGGTAAAGAAAGAAAAAGAAAACTAAGTAAATTCTAATATATAGAAAATGTCAAAATGCCATCCCAACACAACACCTAAACCCGATGAATGTCTTTTGTGAAAATATAACACTGACAATCTAGATTGCTCCCCATAATATTTTGAGAAGAGAGCTGTTTGCAATATTTCCGGAAAGATCTTCAAACTAAATACCCACTCCCTCCGTTTCATATTATAAGTTGTTTTGACTTTTTTCCTATTCAAACTTTATTAAGTTTGCCCAAATTTATAGAAAAATTTAGCAACATCTAAAACACCAAATCAGTTTCATTAAATCTAACATTGAATATATTTTGGTCATATGTTTGTTTTGTGGTGAAAATGCTAATATTGTTTTTCTATAAACTTGGTCTAACTTAAATAAATTTGACTAGGAAAAAAGTCAAAACGACTTATAATATGAAACGGAGGGAGTATTAAGCATGAAAGTAATTTTCTCATCAATTTTGTTGCATCTAAGATCATAAACCTTTTGAGCACTAGGTTAAGAACACAGCTATCTAACAGCTAAAAATCCTTTTATCAAAGAAAAGTCTGGTCCACAAACAGTAAAATGCTTTAGAGTATCCACTAGCCACAAATTTCAGTTTCACATAGAGATCAGGGTAGAGAAGAGAGATACTTACTTGCTGCAAACACGAGAAAGCTGCTTCACGGTACAATTTTGACTTCCTACTGCATGCAGCACAAACAGCATTTAGAATAACACTAGGCATGCCAGAGTCTTCTGCACTCATAGCAGTATGGCAGCTCGAACAAAGTGCAGCGAGTGCATCCAGAATAGCATCTTTTCCCTGTGGTAATTCATGGCGAAAAAAATGAATTATGAACCTAGTCATGGATAATGTTTCTTGAAAATCTCTAAGCATTCCATCCTATTTTATTCCATGAATAAAAGGAAAGATTCACTGATATGCCACAGATAGAAAAATCATAGTACTACTTACCTCCCAAAATCGACCAGGTAGTTCTTTCAAAAGTGATTCAAGAATATTATTGTGGTGCACAGACAGGGATTCTCCTAGAGCATCACATAGTTTTTTTATAGCCTTGGCTGACTGCAAGTAGCACACAGTATCGTAAGTGTATTCCAAGCTATGATACTTTTATGTGTATAGACAGTAAAATAATGAAATAGAGGCTTCACCTTTCTCTTCCCAGCCCATGATGACGAGGACATGGAATCACACAAAAGAGAGATAATTTCTGGTAAGTATAACTGTAGGGTTACTCTTTCGCTACTAGGAATATCCTCCCAAAGTTCTCCATACAATGCACCGATGTCTTTGTCATCATCAAATCTGAAAATAAGTTTTGTTATTGCAGAGTACAGTTCAAAGAACATGTGCATTTCAAGTTTCTGTGATAGACTGATAGTGAACTTCAAAACACATTAATATCTGTAATACCATTAGCAATGGTAGAGAAGATAAAAGGCTAAGATAAGACTACATGCGTTCACATACCTTGAAGCAAAAATTACTGGGAGAACAACTGCATTGTATCCACTAAGAATATCTGCTGCATTGCTTAAATAAGATTTAATAAGAATTGCAGCAGACAACTGAGCATTTTTTTCACCTAAATGCAGAGAAGTGGTATCTTCAATAAGTTTCTGAGCCTGAGAAGGGCTGGCATATTTTAAGACTGCAGCACAAGATGATGCAAAGGCCCTTTTAGCTGCAGAACTCTTTTCCTCCAGAACAGCACTATACAGTAACCTCAGCAATGTTGCCGCATATGGCTTGATTTCAACCATGACCTTCTGTACTAACAAGGTGATGAAGCTAGCAACACCAACCCTGAAATAAGACAAACATAAAATGAATGACAATAAGATTGAAGTACATGAAAAGCAACAATTTATTATTTCAATTATACTACAAGGTTCATAGTAGCATCAAAACTAACCTTGTATTAAGACCAACAGCAGATTTAACCATTTGAGCCAGACGAGGAACTAAAAGATCCAGTGATTCTTTGTCAAAAACTTTTAAACAGATATCAAGGGTTTCCCACATCGGAGAATCTTTAGCCACAGCTATACGCAAGCTCTCAAGCTTTTCAGTTTGGATGCCAGCATTTCCTGCATGCATCTTTGGTCCAAATTCAGAAATGAGTGAAGTATAGAAACTGTTAATTGTCTTGGAAAATCACTACCCATCCGTGCTTAACAAAAACCAAGAAAAGTAGCATACCTCAACATAGTTCAATCTTTGATCCTCCAGACTTGATAAGCATTCGAGCATACAGCTGACAAGTTCTGACAGATGTGGCTTAAGTGCAGGGCCAGCCCCCTGTGAACATCGGGCAGTTAGTTCATGTAATTCAATTCATGACAGCAGCATACATAAAGAAAATTACAGTGGAGCAAAAAATTGCCACTAAAATGTTAATGCAGATAACTTTTTTTGAATTTGACAATGAGTATACCTTAGCAAGCTTCATAACCAAACTTATAGATGCCTTTTGAACACTTGAAACTTTACTGAGTATGCCTTCAGAAAGCAAGTATGGCAGTACAATGTTCATTGTTTCATTTGCATCAGATGAAGTAGTAAGTGACACATCACAGAGCCTAACTGTCAACAAGCTTACAGCTCGGCACAAACTGTCACCAGCATTTCGCACAGTTTCCTTAATATCATCCATTGCTCGGAAGGTGGTAATCCATATTTTTCTCAAATGCTTAGAAACCTTAACAAAGGGAAAGATAAGCAATATTTTATTCTCAAAATAAATCCAAAACCAGTTATTCATAGCTTATGCAAAACAACATAGTTACATAAATTTTTTTTTAAAAAAATCAAAATTAGCAAAACAAATTAACTACCTGACCATATCTTCGACCTTGAATAATGTCTGCAAGTGCAAGACATGAAGCTTCACGTGAACGCCAAAGCCTCGATCCAGATTGAACCAATAAATCTTCTACTATTAGATCATAATGTTCATCTATTGTTTTTTTTGGATCTGCAACAATTAATTTCCATATGTGTGCCATAGAATCCTAGAATGAAATACAAAGTGTCAGTTAGCTAGGAAGAACCATTTTTGAAATAGTTAAGTGATCAAAATCAGATAATCTGAGCTGTCTGATGCACTGTAGTACTTCCTGACTGCCTTGGATTCTATATGAACAAGAAGACCGCATTATACTTTTATATCTATACACTATTGGAAAAAACAAACCAATAATTCTCTAGGTAAGATTACAAACATGCATACGACCTCAGCTGTGGAGTTGCTGAAATTTTGCAGGCCATAGCTAACAAGATTCATACTCACTTTGGTGCAATGAAGGATCATAAGGTTATAGCATACAAACACTTTAAGAACTTAAACCAAACACAAAAATCAGAAAACAAAACACGGCATATGTGATAATGGAAGTGTATAGTTCAATACCTGGATGTTCTTATCAGGATCATATTGGTAACGGACAAGCCTGGGAATTAAGGTATGCAGATGAGGCTGAAGTGCCTCACCAGCTTGCTTGGCTATCTTGGAAAACCCAAAAGCAGCACCCCTCTTGGAATTGATAGCAGCCTGATAGTTAGCTAGATCCATAAACTTGTATATTAAGTCAGGTTGGCCCATCTCGTTGGCAAGGCTACAAAGTTCCTTGTATGTGCTAAGCTTTCCTCCAGTAGGATTATTGCCAATAGTTCCTTCTTGAAAAACCTCTGAATCCTCCATCAGCTAATGCAGACAGAGAAAACATTAATCATTTTACAGTTTTTTTTTTGGGTACGGGTTCGGGGGTATTCCAGGTTCTCTCAAAATGGAAACTGGAAACATAGTGTGCACCTTGATGGCCCTTTTCTTTTTTGCTGCGCCAGACAGTGTATTCACGAGAGCATGAACCAGCTGCTCCTTCATAGATGCATCACCAAGCTCATATACAATACTCATGCCTTGGGATGCCAGATCTTGTGTAAGATCATTCTGATCACCAAGAAGGTGGGTAAGGGCTTCCTATAAAAGGAATGAACTTCAAAAGGTAAGCAGAAACCTAGAGCAAACTGTTATACGCTGGAATGAACATAATGATACAAGATAGAAGACATTTAGAAGAGAAACATATAATGACAGCAAAAGACAAAGTTTGAATATGAGAATAGCTCAACATTAAAGGACACTCTTTCACCCCAAGACAGGGACCCCACTAACTGAAAACACTACACTACATCAGTATATGCATGCACAATTTGTAGAATCAAATACTCAAAGTTTCTGGTTTTCTTCAACTGAAATGCGTAAACACCATTGAGGATAAAACCTAAAAAGAAGTGCACTTGGACATGGATCAAGTCTAAACATAGGTGATTGTATCAGTACTGAAATTAATATTTTTCAGTGACAGCTTGACAGCTGAAACCTCTGAGGAACTCTGAATTATACTATAAGCAAGCACATGTTTTAGATGAAAGGTACACAATTATTAACAGTTGTTGGCTTCTGTGCCCTGTCCAGCATACTGGCATTGTTTTAATTTTAGGACAGATTAATAATTCACACAACCTATGGTGTATCAATTCTAATGTAAACTTTGGAGTGCACCACTCTTGTTTGTCCTAAGATATAGTACTTCTACAATGATAAATATATGTTATTATTGATTGGCAGACCTGAATTTGTGGAAGTAGTTCAAGGATCTTTGGATGCTGACCACAGTACATTGTAAGTGAGACCAACCAGACAGTACCTGCGCACCTTTCCTCTTTTCTACTGCTATAAATTAGTGTATCAAATAACCGTTTTATAATTTCTTCTCGAGCCATTGCGTGTGCTTCTTCACAATCACTTCCTTTATTAGAGTTACTCGAGACAAGTAGGGGTGCATCACCAGTAAGATAGTTTGTGGCCTGGGAAAGGGAGACAAAGTTCGTTTCTAGTATTACATCTGTGGTC
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| CDS seq | ATGGCTCGAGAAGAAATTATAAAACGGTTATTTGATACACTAATTTATAGCAGTAGAAAAGAGGAAAGGTGCGCAGGTACTGTCTGGTTGGTCTCACTTACAATGTACTGTGGTCAGCATCCAAAGATCCTTGAACTACTTCCACAAATTCAGGAAGCCCTTACCCACCTTCTTGGTGATCAGAATGATCTTACACAAGATCTGGCATCCCAAGGCATGAGTATTGTATATGAGCTTGGTGATGCATCTATGAAGGAGCAGCTGGTTCATGCTCTCGTGAATACACTGTCTGGCGCAGCAAAAAAGAAAAGGGCCATCAAGCTGATGGAGGATTCAGAGGTTTTTCAAGAAGGAACTATTGGCAATAATCCTACTGGAGGAAAGCTTAGCACATACAAGGAACTTTGTAGCCTTGCCAACGAGATGGGCCAACCTGACTTAATATACAAGTTTATGGATCTAGCTAACTATCAGGCTGCTATCAATTCCAAGAGGGGTGCTGCTTTTGGGTTTTCCAAGATAGCCAAGCAAGCTGGTGAGGCACTTCAGCCTCATCTGCATACCTTAATTCCCAGGCTTGTCCGTTACCAATATGATCCTGATAAGAACATCCAGGATTCTATGGCACACATATGGAAATTAATTGTTGCAGATCCAAAAAAAACAATAGATGAACATTATGATCTAATAGTAGAAGATTTATTGGTTCAATCTGGATCGAGGCTTTGGCGTTCACGTGAAGCTTCATGTCTTGCACTTGCAGACATTATTCAAGGTCGAAGATATGGTCAGGTTTCTAAGCATTTGAGAAAAATATGGATTACCACCTTCCGAGCAATGGATGATATTAAGGAAACTGTGCGAAATGCTGGTGACAGTTTGTGCCGAGCTGTAAGCTTGTTGACAGTTAGGCTCTGTGATGTGTCACTTACTACTTCATCTGATGCAAATGAAACAATGAACATTGTACTGCCATACTTGCTTTCTGAAGGCATACTCAGTAAAGTTTCAAGTGTTCAAAAGGCATCTATAAGTTTGGTTATGAAGCTTGCTAAGGGGGCTGGCCCTGCACTTAAGCCACATCTGTCAGAACTTGTCAGCTGTATGCTCGAATGCTTATCAAGTCTGGAGGATCAAAGATTGAACTATGTTGAGATGCATGCAGGAAATGCTGGCATCCAAACTGAAAAGCTTGAGAGCTTGCGTATAGCTGTGGCTAAAGATTCTCCGATGTGGGAAACCCTTGATATCTGTTTAAAAGTTTTTGACAAAGAATCACTGGATCTTTTAGTTCCTCGTCTGGCTCAAATGGTTAAATCTGCTGTTGGTCTTAATACAAGGGTTGGTGTTGCTAGCTTCATCACCTTGTTAGTACAGAAGGTCATGGTTGAAATCAAGCCATATGCGGCAACATTGCTGAGGTTACTGTATAGTGCTGTTCTGGAGGAAAAGAGTTCTGCAGCTAAAAGGGCCTTTGCATCATCTTGTGCTGCAGTCTTAAAATATGCCAGCCCTTCTCAGGCTCAGAAACTTATTGAAGATACCACTTCTCTGCATTTAGGTGAAAAAAATGCTCAGTTGTCTGCTGCAATTCTTATTAAATCTTATTTAAGCAATGCAGCAGATATTCTTAGTGGATACAATGCAGTTGTTCTCCCAGTAATTTTTGCTTCAAGATTTGATGATGACAAAGACATCGGTGCATTGTATGGAGAACTTTGGGAGGATATTCCTAGTAGCGAAAGAGTAACCCTACAGTTATACTTACCAGAAATTATCTCTCTTTTGTGTGATTCCATGTCCTCGTCATCATGGGCTGGGAAGAGAAAGTCAGCCAAGGCTATAAAAAAACTATGTGATGCTCTAGGAGAATCCCTGTCTGTGCACCACAATAATATTCTTGAATCACTTTTGAAAGAACTACCTGGTCGATTTTGGGAGGGAAAAGATGCTATTCTGGATGCACTCGCTGCACTTTGTTCGAGCTGCCATACTGCTATGAGTGCAGAAGACTCTGGCATGCCTAGTGTTATTCTAAATGCTGTTTGTGCTGCATGCAGTAGGAAGTCAAAATTGTACCGTGAAGCAGCTTTCTCGTGTTTGCAGCAAGTGATTACAGCATTCAAAGATCCAGGATTCTTCAATATTGTTTTTCCTATGCTGTATGAGGTTTCTAATCGATCTGTCATTTGTAAAACAAGGAACTCATCTTCACTCACTGCATCCTCTAGTGCTGAGCAAGATGAAACTGAAGGTGTTTCTGTTTCTCTTGATAAGGTGCTCAACTGTGTAGCATCTTCAATCACTGTTGCTTTCCTGCAAGATATTATCAACCAAAGGAAGAATATCCTGGAAATTATTTTAAATTCTCTATCCCCCGAGGAGAGTTGGCAGATTAAGTTGTCATCGTTCTTGTGTATCAAAGAGTTGTGCTATAAATTCCAGAATTCAGATGGTAATAACACTTGGCCTGAGGAAACAACTTACTTGGTTGAGGAGTTATTTCATTCAACAGCACCAAAAGTTGTGGATGTCATACGCTTAGTTAAGATTGCTCAGGTTCACACCGCTGCTTCCGAGTGTCTCCTTGAGTTGAGCAAATTGTATAGAGACTTTCCATTGGTTGACAGAAAAGGGCCCAAGTTCTCAGGCGAACTTGCTGAACTTTGTGAGTCGGAAAAAAGCGAGCAAGCAAAGGCATTTTTGAAGCAATGCATGGATATTCTCAAAGACTTCGAAGATCCCACTGGATTAGCCATGGAGATGGACTAA
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| Protein seq | MAREEIIKRLFDTLIYSSRKEERCAGTVWLVSLTMYCGQHPKILELLPQIQEALTHLLGDQNDLTQDLASQGMSIVYELGDASMKEQLVHALVNTLSGAAKKKRAIKLMEDSEVFQEGTIGNNPTGGKLSTYKELCSLANEMGQPDLIYKFMDLANYQAAINSKRGAAFGFSKIAKQAGEALQPHLHTLIPRLVRYQYDPDKNIQDSMAHIWKLIVADPKKTIDEHYDLIVEDLLVQSGSRLWRSREASCLALADIIQGRRYGQVSKHLRKIWITTFRAMDDIKETVRNAGDSLCRAVSLLTVRLCDVSLTTSSDANETMNIVLPYLLSEGILSKVSSVQKASISLVMKLAKGAGPALKPHLSELVSCMLECLSSLEDQRLNYVEMHAGNAGIQTEKLESLRIAVAKDSPMWETLDICLKVFDKESLDLLVPRLAQMVKSAVGLNTRVGVASFITLLVQKVMVEIKPYAATLLRLLYSAVLEEKSSAAKRAFASSCAAVLKYASPSQAQKLIEDTTSLHLGEKNAQLSAAILIKSYLSNAADILSGYNAVVLPVIFASRFDDDKDIGALYGELWEDIPSSERVTLQLYLPEIISLLCDSMSSSSWAGKRKSAKAIKKLCDALGESLSVHHNNILESLLKELPGRFWEGKDAILDALAALCSSCHTAMSAEDSGMPSVILNAVCAACSRKSKLYREAAFSCLQQVITAFKDPGFFNIVFPMLYEVSNRSVICKTRNSSSLTASSSAEQDETEGVSVSLDKVLNCVASSITVAFLQDIINQRKNILEIILNSLSPEESWQIKLSSFLCIKELCYKFQNSDGNNTWPEETTYLVEELFHSTAPKVVDVIRLVKIAQVHTAASECLLELSKLYRDFPLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDPTGLAMEMD |
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| Function | Proteasome adapter and scaffold protein ECM29 [UniProtKB/Swiss-Prot:Q5VYK3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g04030 | LOC_Os12g04030.1 | Chr12 | 1675882 | 1682837 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTCGAGAAGAAATTATAAAACGGTTATTTGATACACTAATTTATAGCAGTAGAAAAGAGGAAAGGTGCGCAGGTACTGTCTGGTTGGTCTCACTTACAATGTACTGTGGTCAGCATCCAAAGATCCTTGAACTACTTCCACAAATTCAGGAAGCCCTTACCCACCTTCTTGGTGATCAGAATGATCTTACACAAGATCTGGCATCCCAAGGCATGAGTATTGTATATGAGCTTGGTGATGCATCTATGAAGGAGCAGCTGGTTCATGCTCTCGTGAATACACTGTCTGGCGCAGCAAAAAAGAAAAGGGCCATCAAGCTGATGGAGGATTCAGAGGTTTTTCAAGAAGGAACTATTGGCAATAATCCTACTGGAGGAAAGCTTAGCACATACAAGGAACTTTGTAGCCTTGCCAACGAGATGGGCCAACCTGACTTAATATACAAGTTTATGGATCTAGCTAACTATCAGGCTGCTATCAATTCCAAGAGGGGTGCTGCTTTTGGGTTTTCCAAGATAGCCAAGCAAGCTGGTGAGGCACTTCAGCCTCATCTGCATACCTTAATTCCCAGGCTTGTCCGTTACCAATATGATCCTGATAAGAACATCCAGGATTCTATGGCACACATATGGAAATTAATTGTTGCAGATCCAAAAAAAACAATAGATGAACATTATGATCTAATAGTAGAAGATTTATTGGTTCAATCTGGATCGAGGCTTTGGCGTTCACGTGAAGCTTCATGTCTTGCACTTGCAGACATTATTCAAGGTCGAAGATATGGTCAGGTTTCTAAGCATTTGAGAAAAATATGGATTACCACCTTCCGAGCAATGGATGATATTAAGGAAACTGTGCGAAATGCTGGTGACAGTTTGTGCCGAGCTGTAAGCTTGTTGACAGTTAGGCTCTGTGATGTGTCACTTACTACTTCATCTGATGCAAATGAAACAATGAACATTGTACTGCCATACTTGCTTTCTGAAGGCATACTCAGTAAAGTTTCAAGTGTTCAAAAGGCATCTATAAGTTTGGTTATGAAGCTTGCTAAGGGGGCTGGCCCTGCACTTAAGCCACATCTGTCAGAACTTGTCAGCTGTATGCTCGAATGCTTATCAAGTCTGGAGGATCAAAGATTGAACTATGTTGAGATGCATGCAGGAAATGCTGGCATCCAAACTGAAAAGCTTGAGAGCTTGCGTATAGCTGTGGCTAAAGATTCTCCGATGTGGGAAACCCTTGATATCTGTTTAAAAGTTTTTGACAAAGAATCACTGGATCTTTTAGTTCCTCGTCTGGCTCAAATGGTTAAATCTGCTGTTGGTCTTAATACAAGGGTTGGTGTTGCTAGCTTCATCACCTTGTTAGTACAGAAGGTCATGGTTGAAATCAAGCCATATGCGGCAACATTGCTGAGGTTACTGTATAGTGCTGTTCTGGAGGAAAAGAGTTCTGCAGCTAAAAGGGCCTTTGCATCATCTTGTGCTGCAGTCTTAAAATATGCCAGCCCTTCTCAGGCTCAGAAACTTATTGAAGATACCACTTCTCTGCATTTAGGTGAAAAAAATGCTCAGTTGTCTGCTGCAATTCTTATTAAATCTTATTTAAGCAATGCAGCAGATATTCTTAGTGGATACAATGCAGTTGTTCTCCCAGTAATTTTTGCTTCAAGATTTGATGATGACAAAGACATCGGTGCATTGTATGGAGAACTTTGGGAGGATATTCCTAGTAGCGAAAGAGTAACCCTACAGTTATACTTACCAGAAATTATCTCTCTTTTGTGTGATTCCATGTCCTCGTCATCATGGGCTGGGAAGAGAAAGTCAGCCAAGGCTATAAAAAAACTATGTGATGCTCTAGGAGAATCCCTGTCTGTGCACCACAATAATATTCTTGAATCACTTTTGAAAGAACTACCTGGTCGATTTTGGGAGGGAAAAGATGCTATTCTGGATGCACTCGCTGCACTTTGTTCGAGCTGCCATACTGCTATGAGTGCAGAAGACTCTGGCATGCCTAGTGTTATTCTAAATGCTGTTTGTGCTGCATGCAGTAGGAAGTCAAAATTGTACCGTGAAGCAGCTTTCTCGTGTTTGCAGCAAGTGATTACAGCATTCAAAGATCCAGGATTCTTCAATATTGTTTTTCCTATGCTGTATGAGGTTTCTAATCGATCTGTCATTTGTAAAACAAGGAACTCATCTTCACTCACTGCATCCTCTAGTGCTGAGCAAGATGAAACTGAAGGTGTTTCTGTTTCTCTTGATAAGGTGCTCAACTGTGTAGCATCTTCAATCACTGTTGCTTTCCTGCAAGATATTATCAACCAAAGGAAGAATATCCTGGAAATTATTTTAAATTCTCTATCCCCCGAGGAGAGTTGGCAGATTAAGTTGTCATCGTTCTTGTGTATCAAAGAGTTGTGCTATAAATTCCAGAATTCAGATGGTAATAACACTTGGCCTGAGGAAACAACTTACTTGGTTGAGGAGTTATTTCATTCAACAGCACCAAAAGTTGTGGATGTCATACGCTTAGTTAAGATTGCTCAGGTTCACACCGCTGCTTCCGAGTGTCTCCTTGAGTTGAGCAAATTGTATAGAGACTTTCCATTGGTTGACAGAAAAGGGCCCAAGTTCTCAGGCGAACTTGCTGAACTTTGTGAGTCGGAAAAAAGCGAGCAAGCAAAGGCATTTTTGAAGCAATGCATGGATATTCTCAAAGACTTCGAAGATCCCACTGGATTAGCCATGGAGATGGACTAA
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| Protein seq | MAREEIIKRLFDTLIYSSRKEERCAGTVWLVSLTMYCGQHPKILELLPQIQEALTHLLGDQNDLTQDLASQGMSIVYELGDASMKEQLVHALVNTLSGAAKKKRAIKLMEDSEVFQEGTIGNNPTGGKLSTYKELCSLANEMGQPDLIYKFMDLANYQAAINSKRGAAFGFSKIAKQAGEALQPHLHTLIPRLVRYQYDPDKNIQDSMAHIWKLIVADPKKTIDEHYDLIVEDLLVQSGSRLWRSREASCLALADIIQGRRYGQVSKHLRKIWITTFRAMDDIKETVRNAGDSLCRAVSLLTVRLCDVSLTTSSDANETMNIVLPYLLSEGILSKVSSVQKASISLVMKLAKGAGPALKPHLSELVSCMLECLSSLEDQRLNYVEMHAGNAGIQTEKLESLRIAVAKDSPMWETLDICLKVFDKESLDLLVPRLAQMVKSAVGLNTRVGVASFITLLVQKVMVEIKPYAATLLRLLYSAVLEEKSSAAKRAFASSCAAVLKYASPSQAQKLIEDTTSLHLGEKNAQLSAAILIKSYLSNAADILSGYNAVVLPVIFASRFDDDKDIGALYGELWEDIPSSERVTLQLYLPEIISLLCDSMSSSSWAGKRKSAKAIKKLCDALGESLSVHHNNILESLLKELPGRFWEGKDAILDALAALCSSCHTAMSAEDSGMPSVILNAVCAACSRKSKLYREAAFSCLQQVITAFKDPGFFNIVFPMLYEVSNRSVICKTRNSSSLTASSSAEQDETEGVSVSLDKVLNCVASSITVAFLQDIINQRKNILEIILNSLSPEESWQIKLSSFLCIKELCYKFQNSDGNNTWPEETTYLVEELFHSTAPKVVDVIRLVKIAQVHTAASECLLELSKLYRDFPLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDPTGLAMEMD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.949384 | 1.237789 | 1.148916 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0134200 | RBH | 1.186653 | 1.807039 | 4.955636 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04220 | RBH | 1.444070 | 0.900542 | 0.832768 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0134200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002290 | RBH | 0.259152 | 17.159941 | 6.154406 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002500 | RBH | 0.370148 | 1.795925 | 2.737558 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002510 | RBH | 1.274140 | 13.085980 | 8.989687 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002320 | RBH | 0.089331 | 0.242673 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002570 | RBH | 3.798825 | 15.497348 | 15.590113 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002550 | RBH | 0.290294 | 0.585021 | 0.921035 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0032200 | SBH | 5.570348 | 11.025582 | 13.717733 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002340 | RBH | 0.029826 | 0.179707 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002560 | RBH | 0.255499 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002580 | RBH | 4.387650 | 8.670361 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002500 | RBH | 0.556219 | 0.0 | 0.602700 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002500 | RBH | 0.264262 | 3.992365 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002400 | RBH | 0.218222 | 3.504383 | 1.493632 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002650 | RBH | 0.679871 | 12.303988 | 7.251406 |
