Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g03450 | OGI:12004040 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:1346249-1348258 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGCCCAGCAACCGCAGCCGCGGAGGCAGCACTCGCCCGCCGCGCCGCCGACCCGCTGCCCGCGCTCCGCCGCCGCGACGCGCTCCCGCTCCCGGCGCGCCTCTTCGCGCAGCTCCACGCTCTCGTCCTCACCGCCGGCCTCGCGCGCCATTCCCCCAACTTCTCCCTCCTCCTCCGCCTCGCCTCCCCTCTCCTCCCCGTCTCCCACCGCCTCCGCCTCCTCCTCTCCTCCCCGCTCCCGCCCACCACCTTCCTCGCCAACTCCCTCCTCCTCGCCTCCTCCTCCTCCCGCTGCCTCCCCTCCGCGCTCTCCCTCTACGCCCTCCTCTTCCTCTCCTCCTCGCCGCCGCTCCTCCGCCCCAACGCCTTCACCTACCCGCCGCTGTTCCGCGCCGCGCCTCCGGCCCTCGCCCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCGCGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCGCCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGCCTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCTCGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGCCGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCACACCTATGCCGTGAAGCGCCGGCTCGCCGTCAACTGCATCGTGGCCACGGCGCTTGTGGAGATGTATGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGACACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGCCCTCTCCCTGTTGGACAGAATGCACGGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCTATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACGGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATACAGGTCTCTGATCCGGGCCTGTGGCATTCATGGCAAGCTGGAGCTCGGTGAGAAGATGATCGCAGAATTGATGCGACTTGAACCGGATGACAGTGGAAACCATGTCCTGATTTCAAACTTCTATGCGAGAACGAACCGATGGGAGGATGCCAAGAAGGCGAGGAAGGAGATGAAGTCCATGGGCATTGACAAGAACCCTGGATCAAGCCTTGTAGACATCAATGGAGTTCTCCATGAGTTCTTGGTGGGTGACAAGACACACCCTGCCTCAAAGGAGATATACACCATGGTTGAGGAGATAGAAACCAGGTTAATCGAGTGCGGACGCCGGTCGAGCACCTCGTCTGCGTTGTTTGATGTCGAGGAGGAGGACAAGGCGGATACACTGTCCTACCACAGCGAGAGGCTCGCCATTGCCTTTGCTCTGATCGCTTCCAATCCAGGAGCTCCCATTAGGATCATCAAGAATCTCCGGGTGTGTGCCGATTGCCATGAGAGCGCAAAGCTTGTATCTCGGGTGTATGGTAGAGAGATTGTCATGAGGGACCGTACCCGGTTCCATCACTTCAGAGACGGGGTGTGTTCTTGTGGAGATTTCTGGTAAATACTCGTTGTGTTGTATTGTACATTATACAGTGTAATGTGCTGTAGATTTCTCTCATAATTCTGTGGTAATGGGATGTGCTGTACTGGTCTCACACATTTGCTCGAGATCACAGGCTGTGTTTAGTTCCACGCTAAAATTGAAAGTTTGAAGAAATTAGAACGATGTGACAGAAAAGTTGGAAGTTTGAAG
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| CDS seq | ATGGGCCCAGCAACCGCAGCCGCGGAGGCAGCACTCGCCCGCCGCGCCGCCGACCCGCTGCCCGCGCTCCGCCGCCGCGACGCGCTCCCGCTCCCGGCGCGCCTCTTCGCGCAGCTCCACGCTCTCGTCCTCACCGCCGGCCTCGCGCGCCATTCCCCCAACTTCTCCCTCCTCCTCCGCCTCGCCTCCCCTCTCCTCCCCGTCTCCCACCGCCTCCGCCTCCTCCTCTCCTCCCCGCTCCCGCCCACCACCTTCCTCGCCAACTCCCTCCTCCTCGCCTCCTCCTCCTCCCGCTGCCTCCCCTCCGCGCTCTCCCTCTACGCCCTCCTCTTCCTCTCCTCCTCGCCGCCGCTCCTCCGCCCCAACGCCTTCACCTACCCGCCGCTGTTCCGCGCCGCGCCTCCGGCCCTCGCCCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCGCGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCGCCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGCCTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCTCGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGCCGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCACACCTATGCCGTGAAGCGCCGGCTCGCCGTCAACTGCATCGTGGCCACGGCGCTTGTGGAGATGTATGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGACACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGCCCTCTCCCTGTTGGACAGAATGCACGGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCTATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACGGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATACAGGTCTCTGATCCGGGCCTGTGGCATTCATGGCAAGCTGGAGCTCGGTGAGAAGATGATCGCAGAATTGATGCGACTTGAACCGGATGACAGTGGAAACCATGTCCTGATTTCAAACTTCTATGCGAGAACGAACCGATGGGAGGATGCCAAGAAGGCGAGGAAGGAGATGAAGTCCATGGGCATTGACAAGAACCCTGGATCAAGCCTTGTAGACATCAATGGAGTTCTCCATGAGTTCTTGGTGGGTGACAAGACACACCCTGCCTCAAAGGAGATATACACCATGGTTGAGGAGATAGAAACCAGGTTAATCGAGTGCGGACGCCGGTCGAGCACCTCGTCTGCGTTGTTTGATGTCGAGGAGGAGGACAAGGCGGATACACTGTCCTACCACAGCGAGAGGCTCGCCATTGCCTTTGCTCTGATCGCTTCCAATCCAGGAGCTCCCATTAGGATCATCAAGAATCTCCGGGTGTGTGCCGATTGCCATGAGAGCGCAAAGCTTGTATCTCGGGTGTATGGTAGAGAGATTGTCATGAGGGACCGTACCCGGTTCCATCACTTCAGAGACGGGGTGTGTTCTTGTGGAGATTTCTGGTAA
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| Protein seq | MGPATAAAEAALARRAADPLPALRRRDALPLPARLFAQLHALVLTAGLARHSPNFSLLLRLASPLLPVSHRLRLLLSSPLPPTTFLANSLLLASSSSRCLPSALSLYALLFLSSSPPLLRPNAFTYPPLFRAAPPALALALATHSVKFLGAHAASCDRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW |
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| Function | Pentatricopeptide repeat-containing protein At4g21065 [UniProtKB/Swiss-Prot:A8MQA3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g03450 | LOC_Os12g03450.1 | Chr12 | 1346249 | 1348258 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGCCCAGCAACCGCAGCCGCGGAGGCAGCACTCGCCCGCCGCGCCGCCGACCCGCTGCCCGCGCTCCGCCGCCGCGACGCGCTCCCGCTCCCGGCGCGCCTCTTCGCGCAGCTCCACGCTCTCGTCCTCACCGCCGGCCTCGCGCGCCATTCCCCCAACTTCTCCCTCCTCCTCCGCCTCGCCTCCCCTCTCCTCCCCGTCTCCCACCGCCTCCGCCTCCTCCTCTCCTCCCCGCTCCCGCCCACCACCTTCCTCGCCAACTCCCTCCTCCTCGCCTCCTCCTCCTCCCGCTGCCTCCCCTCCGCGCTCTCCCTCTACGCCCTCCTCTTCCTCTCCTCCTCGCCGCCGCTCCTCCGCCCCAACGCCTTCACCTACCCGCCGCTGTTCCGCGCCGCGCCTCCGGCCCTCGCCCTCGCGCTCGCCACCCATTCGGTCAAATTCCTCGGCGCCCATGCTGCCTCCTGCGACCGCGTCCTCGGTGCCGCGCTGCTCGGCGTCTTCGCGCGCTGCGGCAGGATCGCCTCATGCCGCCGGGTGTTCGACCGGATCGCGCACCCCGACCTGCCGGCCTGGAACGCGCTGCTCTCCGCCTACGCGCGTCTTCGTGCCAGGGACGTGGCCTGCGCCACCTCTGCGGCGGATGCAATCCTCGAGCTGTTTGTGCGGATGCTATCCTTAGCCATTGAACCCAACGAGATCACGCTCGTCGCCGTCATCGGCGCGTGCGGCGAGCTTGGCGCTGTCAGCCACGGGGTGTGGGCGCACACCTATGCCGTGAAGCGCCGGCTCGCCGTCAACTGCATCGTGGCCACGGCGCTTGTGGAGATGTATGCCGGGTGCGGGAGGCTGGACCTGGCCGAGCAGGTCTTTGCAGCCGCTTCGGACAGGGACACGCGCTGCTACAATGCGATGCTCCATGGCTTGGCAGTCCATGGCCATGGCCGTGCTGCCCTCTCCCTGTTGGACAGAATGCACGGTGCGGGCGTGCCGGTGGATGGCGTCACTGTGCTATCCGTGATGTGTGCTTGTGCCCATGCTGGATTGGTGGATGAAGGTCTGGACTACTTCGACAGAATGGAGATCGAATTCGGGATTGAGCCAAGGATTGAGCATTACGGATGCATGATTGACATGCTGAGCCGGGCTGGTCGACTTAACAATGCCGAGAAGCTGATCCACGAAATGCTCATCGTGCCAAATGCCGCGATATACAGGTCTCTGATCCGGGCCTGTGGCATTCATGGCAAGCTGGAGCTCGGTGAGAAGATGATCGCAGAATTGATGCGACTTGAACCGGATGACAGTGGAAACCATGTCCTGATTTCAAACTTCTATGCGAGAACGAACCGATGGGAGGATGCCAAGAAGGCGAGGAAGGAGATGAAGTCCATGGGCATTGACAAGAACCCTGGATCAAGCCTTGTAGACATCAATGGAGTTCTCCATGAGTTCTTGGTGGGTGACAAGACACACCCTGCCTCAAAGGAGATATACACCATGGTTGAGGAGATAGAAACCAGGTTAATCGAGTGCGGACGCCGGTCGAGCACCTCGTCTGCGTTGTTTGATGTCGAGGAGGAGGACAAGGCGGATACACTGTCCTACCACAGCGAGAGGCTCGCCATTGCCTTTGCTCTGATCGCTTCCAATCCAGGAGCTCCCATTAGGATCATCAAGAATCTCCGGGTGTGTGCCGATTGCCATGAGAGCGCAAAGCTTGTATCTCGGGTGTATGGTAGAGAGATTGTCATGAGGGACCGTACCCGGTTCCATCACTTCAGAGACGGGGTGTGTTCTTGTGGAGATTTCTGGTAA
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| Protein seq | MGPATAAAEAALARRAADPLPALRRRDALPLPARLFAQLHALVLTAGLARHSPNFSLLLRLASPLLPVSHRLRLLLSSPLPPTTFLANSLLLASSSSRCLPSALSLYALLFLSSSPPLLRPNAFTYPPLFRAAPPALALALATHSVKFLGAHAASCDRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.082141 | 0.0 | 0.076421 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0128200 | RBH | 0.000000 | 0.0 | 0.324655 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03690 | RBH | 0.122306 | 0.147849 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0128200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001870 | SBH | 0.076051 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002080 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002080 | SBH | 0.000000 | 0.892501 | 0.265052 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001880 | SBH | 0.0 | 0.014077 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002010 | RBH | 0.000000 | 0.0 | 0.423188 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0024700 | RBH | 0.262209 | 1.1145525 | 0.4425215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002000 | RBH | 0.036211 | 0.060029 | 0.046125 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0025800 | RBH | 0.2266125 | 0.9408245 | 1.2063135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002040 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002030 | RBH | 0.740573 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002080 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002030 | SBH | 0.000000 | 0.0 | 0.330272 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001990 | SBH | 0.0 | 0.0 | 0.0 |
