Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g47600 | OGI:11083520 | 6/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:28758715-28760007 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGGTTTTTAATCAAACGAGAGGACATCCCTCGAGGGATCAAAATAGTTTATTCCCGGTATATAGCTAGCCCAAGCCCCACTCTCCAACTCTTGAGAACAAATACAACTACTAGCAGATACGTAGTGCATACTTGAATTTATTGTTCATGTACCTTAATTCAAGCATACAGCACCCTGAGAGACACTCACAAATTACATACGCGCACACGTACACACGCTACGCAAACAAATTCAAAGCTGGCTCCATTATTATACACAATCATGCATATACTATTGGGAAGAAGAAGTTGATCGAATTGAAGCTCCGATGAAGCAGCAATGGCGGCCGGATTGAATGTGAGAATCGATCAAACGAAGTCCTTGAGCGCCCTGCCGTAGTAGTTATCGTAGGCTTTGTCGGCGCCTCGGTCCCACAGCATGGCGCCGCCGTAGTTGCTCGCTGTCTGCGCCCTCTGCATCACGGCGTAGTAGAGCGACTCCGGGTTTATCCAGTCCGCCGCCGTCTCCTCCGCCGGAAGCCCCACGTACACCTGGCTCGCCGGGAACCGCGACGTCCACGCGTCCCAGTCCTCCCAGTCGAACAGGCTCCTCCGCCCCTCGCCGTCGGTCTTGTTCGTGCACGCCGCGTCGCCGTAGAACCGCGGGTGGATGCGCCGCACCAGCCCCGTCCCCAGCGCCGCCGCCGCGTTCGCGTCCGGGTACACGCACCTCGGCGTCGCCGTCAGCAGCACCGGCTTGCCGCGGTAGCCGGCGAGGCGCCGGACCAGCACGTCGTAGTTCGCCGGCCCGCCGTGGTCGATGTAGAGGTCGACGCCGTCGAGCACGGCGTCGCCGAAGGGGCGGAACACGCCCCTGCGGCCGCCGCCGAGGTAGGCGTGCCAGAGGTGGTCCGCGACGTCCTTGGCCGAATTGGCGGTGGGGAGCGAGTACTGGTAGCCGTCGCCGCCGACGGAGAGGAGGACGGGGATGTTCTTGGACTGGCAGTGCTTGACGTCGGCGCCGACTCGGGAGACATCGTGGCCGGAGAGGTCGGTCCAGTAGCGGCCGTGGCCGAAGACGCTGAAGAAGGAGATGATGACGGTGGTGTAGAGGCCGGTGTCGCAGGCCTCCTTCAGTGAGCCCTCCGTCTTGTTGCGGCCCCAGAAGACGGCGATCTGGCCGGTCTTTCCGGTGGCGGTGGCGAGGCACGGGAGGAAGACGACGACGGCTACTAGCATCGTCGTCGTCAAGAGACATAGCTGGTGGCGCGCCATGGCTGATATGATACGATGGCTTAATTAGTACGTGATGTGA
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| CDS seq | ATGGCGCGCCACCAGCTATGTCTCTTGACGACGACGATGCTAGTAGCCGTCGTCGTCTTCCTCCCGTGCCTCGCCACCGCCACCGGAAAGACCGGCCAGATCGCCGTCTTCTGGGGCCGCAACAAGACGGAGGGCTCACTGAAGGAGGCCTGCGACACCGGCCTCTACACCACCGTCATCATCTCCTTCTTCAGCGTCTTCGGCCACGGCCGCTACTGGACCGACCTCTCCGGCCACGATGTCTCCCGAGTCGGCGCCGACGTCAAGCACTGCCAGTCCAAGAACATCCCCGTCCTCCTCTCCGTCGGCGGCGACGGCTACCAGTACTCGCTCCCCACCGCCAATTCGGCCAAGGACGTCGCGGACCACCTCTGGCACGCCTACCTCGGCGGCGGCCGCAGGGGCGTGTTCCGCCCCTTCGGCGACGCCGTGCTCGACGGCGTCGACCTCTACATCGACCACGGCGGGCCGGCGAACTACGACGTGCTGGTCCGGCGCCTCGCCGGCTACCGCGGCAAGCCGGTGCTGCTGACGGCGACGCCGAGGTGCGTGTACCCGGACGCGAACGCGGCGGCGGCGCTGGGGACGGGGCTGGTGCGGCGCATCCACCCGCGGTTCTACGGCGACGCGGCGTGCACGAACAAGACCGACGGCGAGGGGCGGAGGAGCCTGTTCGACTGGGAGGACTGGGACGCGTGGACGTCGCGGTTCCCGGCGAGCCAGGTGTACGTGGGGCTTCCGGCGGAGGAGACGGCGGCGGACTGGATAAACCCGGAGTCGCTCTACTACGCCGTGATGCAGAGGGCGCAGACAGCGAGCAACTACGGCGGCGCCATGCTGTGGGACCGAGGCGCCGACAAAGCCTACGATAACTACTACGGCAGGGCGCTCAAGGACTTCGTTTGA
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| Protein seq | MARHQLCLLTTTMLVAVVVFLPCLATATGKTGQIAVFWGRNKTEGSLKEACDTGLYTTVIISFFSVFGHGRYWTDLSGHDVSRVGADVKHCQSKNIPVLLSVGGDGYQYSLPTANSAKDVADHLWHAYLGGGRRGVFRPFGDAVLDGVDLYIDHGGPANYDVLVRRLAGYRGKPVLLTATPRCVYPDANAAAALGTGLVRRIHPRFYGDAACTNKTDGEGRRSLFDWEDWDAWTSRFPASQVYVGLPAEETAADWINPESLYYAVMQRAQTASNYGGAMLWDRGADKAYDNYYGRALKDFV |
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| Function | Xylanase inhibitor protein 1 [UniProtKB/Swiss-Prot:Q7GCM7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g47600 | LOC_Os11g47600.1 | Chr11 | 28758715 | 28760007 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGCGCCACCAGCTATGTCTCTTGACGACGACGATGCTAGTAGCCGTCGTCGTCTTCCTCCCGTGCCTCGCCACCGCCACCGGAAAGACCGGCCAGATCGCCGTCTTCTGGGGCCGCAACAAGACGGAGGGCTCACTGAAGGAGGCCTGCGACACCGGCCTCTACACCACCGTCATCATCTCCTTCTTCAGCGTCTTCGGCCACGGCCGCTACTGGACCGACCTCTCCGGCCACGATGTCTCCCGAGTCGGCGCCGACGTCAAGCACTGCCAGTCCAAGAACATCCCCGTCCTCCTCTCCGTCGGCGGCGACGGCTACCAGTACTCGCTCCCCACCGCCAATTCGGCCAAGGACGTCGCGGACCACCTCTGGCACGCCTACCTCGGCGGCGGCCGCAGGGGCGTGTTCCGCCCCTTCGGCGACGCCGTGCTCGACGGCGTCGACCTCTACATCGACCACGGCGGGCCGGCGAACTACGACGTGCTGGTCCGGCGCCTCGCCGGCTACCGCGGCAAGCCGGTGCTGCTGACGGCGACGCCGAGGTGCGTGTACCCGGACGCGAACGCGGCGGCGGCGCTGGGGACGGGGCTGGTGCGGCGCATCCACCCGCGGTTCTACGGCGACGCGGCGTGCACGAACAAGACCGACGGCGAGGGGCGGAGGAGCCTGTTCGACTGGGAGGACTGGGACGCGTGGACGTCGCGGTTCCCGGCGAGCCAGGTGTACGTGGGGCTTCCGGCGGAGGAGACGGCGGCGGACTGGATAAACCCGGAGTCGCTCTACTACGCCGTGATGCAGAGGGCGCAGACAGCGAGCAACTACGGCGGCGCCATGCTGTGGGACCGAGGCGCCGACAAAGCCTACGATAACTACTACGGCAGGGCGCTCAAGGACTTCGTTTGA
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| Protein seq | MARHQLCLLTTTMLVAVVVFLPCLATATGKTGQIAVFWGRNKTEGSLKEACDTGLYTTVIISFFSVFGHGRYWTDLSGHDVSRVGADVKHCQSKNIPVLLSVGGDGYQYSLPTANSAKDVADHLWHAYLGGGRRGVFRPFGDAVLDGVDLYIDHGGPANYDVLVRRLAGYRGKPVLLTATPRCVYPDANAAAALGTGLVRRIHPRFYGDAACTNKTDGEGRRSLFDWEDWDAWTSRFPASQVYVGLPAEETAADWINPESLYYAVMQRAQTASNYGGAMLWDRGADKAYDNYYGRALKDFV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.082871 | 0.277296 | 0.118405 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0702100 | RBH | 0.135776 | 0.456798 | 0.509632 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0702100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024790 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024780 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024270 | RBH | 0.0 | 0.0 | 0.630481 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0024350 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024610 | SBH | 0.0 | 0.500402 | 0.962346 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0449500 | RBH | 0.0921255 | 0.8475315 | 1.776966 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0025150 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0445600 | RBH | 1.432625 | 4.253505 | 0.0181385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024940 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0025040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024410 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0024130 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024520 | SBH | 0.0 | 0.239356 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024510 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024720 | SBH | 0.0 | 0.000000 | 0.0 |
