Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g44590 | OGI:11076860 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:26960101-26963361 | ||||||||
| Gene Symbol | LR21, Lr21, OsLr21 | ||||||||||
| DNA seq | CTACACCAAATTCCTCCTACGAGGAGGCCTGCCGTTTGACTCCAAATTGTCATCAGGCTGAGATGAGATCTGCCTTTCAAGACGGTGATACTCAATATCATCCAAGATGTCTTCAGCTTCATAGACAGCCGACCTAAGCTGCTGCAACCATTCCTCCAAACGGCCCCTGTGAGGACTCTCCTCAACTGCTTCCAGCACTAGTTCCAGCTGTAGAACTTTAGTCTGAAGTTGTTTCAGCTTCTCTGATCCATGAAAGCCGAGGTAGGAGAAGCCTTTGTTGAGGATCTTGGTGATGATCGGTGAGACGACCCAACCTACAGCAGATATGCCCCAGCCAACTGCGGCCACCTCCGCCATCCGACGCTCACAGCAAGAGGAGAGGGGGGAATTGGGGATGGGCTGCAAGTTCTTGATTTCTCTTGATGTACATCCTGGATATAAGGACAGAATTCCATTACTTCCATCGCTATCTCGGTTTACTTTTGCAACCAGTCATTGTATTCCCTATTCAGTCATCAACTTGCAATTGGCATGTTGTCACGAGACTAAGATATGTTTGCAACTTTTTTTTTTAAGTCAAATGCAATTTTTAATTTCCATATGCTACTTATTTTCCTATCCAGCTATTCTTTCAGAAGACCATATCCAGTCTGTCCATCACCATGGTGAGAGGTGAGGACCTAACACAATTCAGAAGACCATATCCAGTCTGTCCATCACCATGGTGAGAGGTGAGGACCTAACACAATAACACTGAGTATAATTGTCCCTTCATTTCCTGAAAGACTTCATTCCCATTGTATGTTCGTGTATGATTAGTTTGACCAATTAAGAGCTAACCATGAATGAAAGACTTCATTTCTATCGTTTTCATACTCCAGAAGTCCTCAACTGTTTTTTTCCCTATAGGTCAGCAAAAATATCCAGACATCCAGTACAAAAATGAAGAGAAAAAAAATCAAGAGCTAGCCGCTCACTGGTATTCCTATCGTGATCAGGCTTACTTAAATTGCAAAATTGGTAACTTTGGGTGTGTTTACACCCAAATTTAGCACATAGGATTGAAATAGGAAAAATTGCCAAAGTTTGGGGCTCTGCCAGTTTCCTCCAGAGAGGGCCGGTCAGACCGGCGGCATGTAGCCAGTCTGACCAGCAGAGTCCGAGTCAGACTCCGTTTTCGTCGGGTCTCGGGTTTCCTTACTCGGGAAGGCATGTTTCGGGTTTCCATTAGTTTCTAGTCCGAGTTGGACGTGGAGGAGGACCTGTAGAGGGTAAGACCAACCCCTATTTAAGGGACAAGGCCGGTTCAATTGTAAACAACCAACACACAATCTACTTGAATCGCTTTTTTAATATTCCTTTTACTTTTCAGCTATGTTTTCTACTTTACCCTAGTTTAGTCTATCTTTGTCGATTTGCGTCGTAAATCGTCCGCTGTCGTCGCGAGAGTGCGATTACCCCTTTGTAGGTTTGTCCCGTAAACCTTCCGTTTGCCCACGAGATGGGTAGTTATCCTCATATCGATCTAAATCGGCCTAGAGGCTGATTTTGATATCTAAATCGGCTCTATTTTCTACAAAACCCATCTTGATTTGGCCCTTTGGCTAGATCGGGGTGGTTGGTGACTCCATATCACTGCAAGGCGTTTAGGTGTTGCGATCGTGATTGTCTTCTTGTCAAAAAAAAGTTGCTAACAGGGTGTCATAGAACAAATTTTGCCTTAATACCCAGTTGGTTATGCATCTTAATCTCAGAAACTGCTATGGAATCTCAATGGGTCGTGAGGAGTGAGGAGTGAAAGGTACTGACCTCTCAGAAAAAAACCGCGTGGCTTCCGCAGCAAATTATGGGTGTGTTTAGATTCAAAAATTTGTAGTCAAAAATATCACATCAAATGTTTAGACACATATATGGAGCATTAAATGTGAACGAAAAAAAAACCAATTACACAGTTTACATGTAAATTGCGAGACGAATGTTTTGAGCCTAATTGCGCCATGATTTGACAATGTGGTGCTACAGTAAATATTTACTAATGACGAATTAATTAGGCTTAATAAATTCGTCTCGCGGTTTACAGGCAGAATCTGTAATTTGTTTTGTTATTAGTCTACGTTTAATACTTTTGAATGTGTGTCCGTATACTTTAAAAAACTTTTGGCCAACGAACTAAACACGACCTATCTTTGAATGGCTGTATTCGGCGGAAGGCTGTATTCGCCGGCATTCCGCCGTACACCCTTCTCCGGCGCCCAAGTTAGAATCAGTCTTCACTTTACGAAGTGAGCTTAATTGGTTACGTTCCAAGCGGTGGAACCAGCCCACCAAAGTGCTCGTATTTACGGTTAATAATTCTTTCAGTGATAGGCGATGTACCCGTCGCAAGACGTGTTGATTTATTGGAAAAAAGATGTTTGTCTAGGCATAGTAACTGAGCTCGGTTACTTAAGCGTGCGGCCTAATAACAGAAGAAATACTAGTTCATTAGTGTCTCTCTGTATCAGACGTCGTCAAGTAAGAAGAGTGAGAGTAGCTAGCCATGGTTGCCGGCGGCCGGAGAGCCCGGAGATCGCCACCGTACTAGCATCCGAAATGTTCTTCTTCTCCGATATCAAGCCGCGTCAACCGCACCAAGGTCCCGTGAATTCGCCGCGCATGCAGTTGGCAGTCGGCAGGCAGAAGATCGATCCCCACCGGCCACACCCTGGTGGCGCGCGCAGTGTGTTTGTGGAAATGCTCACAAGCGTCCGGTCTCTTGTCCAGTAGACCTCATCGCCATTTCAGTGTGCATTGATGGGAGACGAGCGCGAGCGGAGAGTGTTTGTGGAAATGCGGGCATGCGGCTGACAAGACAGGGCGTTTTTTGATTTGTGCCTGGCAGGAGTAGCGTGTTTCACAAGTTTTTGCTAGTCCCGCATGATTGCGGTTACAAAATGTTTGGGATATGGAGTTCTCCCTGTCATGGAAATTCAACAACTTAGATACTGGTCCAAAGTCCAAACAACGAATCAGATGCGGCAGCGGCTATTACATTTAATTACTTCTTCAGGTAACTCCCTACAAATGGATAGTCTTAGAACATGTGCCAAATGGAAGCTTGGATTCATTTGTAACAATATGTTTCAAGTAGCTTTATCTACTCGGTTTTAACTGAGAACAAATTAAGTTGTTCATATTGGCTTCCCCTTACTGTTCATTTTCACTTATTTGTGCATTTTCCCACATTGACAACGACAGGTAAGATAGAAACAGAGACGCCAT
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| CDS seq | ATGGCGTCTCTGTTTCTATCTTACCTGTCGTTGTCAATGTGGGAAAATGCACAAATAAGTGAAAATGAACAGGGTTGGTCTTACCCTCTACAGGTCCTCCTCCACGTCCAACTCGGACTAGAAACTAATGGAAACCCGAAACATGCCTTCCCGAGTAAGGAAACCCGAGACCCGACGAAAACGGAGTCTGACTCGGACTCTGCTGGGAAAAAAACAGTTGAGGACTTCTGGAGTATGAAAACGATAGAAATGAAGTCTTTCATTCATGGATGTACATCAAGAGAAATCAAGAACTTGCAGCCCATCCCCAATTCCCCCCTCTCCTCTTGCTGTGAGCGTCGGATGGCGGAGGTGGCCGCAGTTGGCTGGGGCATATCTGCTGTAGGTTGGGTCGTCTCACCGATCATCACCAAGATCCTCAACAAAGGCTTCTCCTACCTCGGCTTTCATGGATCAGAGAAGCTGAAACAACTTCAGACTAAAGTTCTACAGCTGGAACTAGTGCTGGAAGCAGTTGAGGAGAGTCCTCACAGGGGCCGTTTGGAGGAATGGTTGCAGCAGCTTAGGTCGGCTGTCTATGAAGCTGAAGACATCTTGGATGATATTGAGTATCACCGTCTTGAAAGGCAGATCTCATCTCAGCCTGATGACAATTTGGAGTCAAACGGCAGGCCTCCTCGTAGGAGGAATTTGGTGTAG
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| Protein seq | MASLFLSYLSLSMWENAQISENEQGWSYPLQVLLHVQLGLETNGNPKHAFPSKETRDPTKTESDSDSAGKKTVEDFWSMKTIEMKSFIHGCTSREIKNLQPIPNSPLSSCCERRMAEVAAVGWGISAVGWVVSPIITKILNKGFSYLGFHGSEKLKQLQTKVLQLELVLEAVEESPHRGRLEEWLQQLRSAVYEAEDILDDIEYHRLERQISSQPDDNLESNGRPPRRRNLV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g44590 | LOC_Os11g44590.1 | Chr11 | 26960101 | 26963361 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGTCTCTGTTTCTATCTTACCTGTCGTTGTCAATGTGGGAAAATGCACAAATAAGTGAAAATGAACAGGGTTGGTCTTACCCTCTACAGGTCCTCCTCCACGTCCAACTCGGACTAGAAACTAATGGAAACCCGAAACATGCCTTCCCGAGTAAGGAAACCCGAGACCCGACGAAAACGGAGTCTGACTCGGACTCTGCTGGGAAAAAAACAGTTGAGGACTTCTGGAGTATGAAAACGATAGAAATGAAGTCTTTCATTCATGGATGTACATCAAGAGAAATCAAGAACTTGCAGCCCATCCCCAATTCCCCCCTCTCCTCTTGCTGTGAGCGTCGGATGGCGGAGGTGGCCGCAGTTGGCTGGGGCATATCTGCTGTAGGTTGGGTCGTCTCACCGATCATCACCAAGATCCTCAACAAAGGCTTCTCCTACCTCGGCTTTCATGGATCAGAGAAGCTGAAACAACTTCAGACTAAAGTTCTACAGCTGGAACTAGTGCTGGAAGCAGTTGAGGAGAGTCCTCACAGGGGCCGTTTGGAGGAATGGTTGCAGCAGCTTAGGTCGGCTGTCTATGAAGCTGAAGACATCTTGGATGATATTGAGTATCACCGTCTTGAAAGGCAGATCTCATCTCAGCCTGATGACAATTTGGAGTCAAACGGCAGGCCTCCTCGTAGGAGGAATTTGGTGTAG
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| Protein seq | MASLFLSYLSLSMWENAQISENEQGWSYPLQVLLHVQLGLETNGNPKHAFPSKETRDPTKTESDSDSAGKKTVEDFWSMKTIEMKSFIHGCTSREIKNLQPIPNSPLSSCCERRMAEVAAVGWGISAVGWVVSPIITKILNKGFSYLGFHGSEKLKQLQTKVLQLELVLEAVEESPHRGRLEEWLQQLRSAVYEAEDILDDIEYHRLERQISSQPDDNLESNGRPPRRRNLV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.389382 | 0.963653 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0682600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0682600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023060 | SBH | 0.721716 | 4.629389 | 1.179042 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023140 | SBH | 0.000000 | 0.000000 | 1.017373 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022770 | SBH | 0.979597 | 4.284066 | 2.042390 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022460 | SBH | 0.124196 | 0.081978 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022720 | SBH | 2.844949 | 2.401514 | 2.983024 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0405000 | SBH | 2.546412 | 9.46714 | 0.3946455 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023620 | SBH | 0.393959 | 0.167419 | 0.935478 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0435600 | SBH | 0.2172335 | 0.077836 | 1.2482735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023250 | SBH | 0.086567 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017470 | SBH | 0.047205 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022960 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022690 | SBH | 0.796213 | 0.0 | 0.076279 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022580 | SBH | 0.015212 | 0.477175 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022940 | SBH | 0.684989 | 0.867905 | 0.231093 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023370 | SBH | 1.251961 | 12.032497 | 1.134784 |
