Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g44415 | OGI:11075910 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:26873372-26873913 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACAGAAGCAACAGCCTTAAATATTACATGATGAGAAATACATTGCCCAGTTCACATAAGATGTCTTGGGAGCCCAGGCTATGCTACCCGTCGCAACGGGCGAGTTCGAGCGCCTTCTCGAGGTTGGCCACGACTTCCGAAATGGCTGGCCGCTCCTCCCACTGCAGCTGCAGGCAGCGAGCTGCTATCTGCGCCACCAGTTCCGCCGCCTCCAGCTGCCTCGGCGTTGGCTCCGGTGCCGGCCGCCTGTCCAGAAACTTCCACAGCTCCCCCGCCTCGATCAGTATCAGCGCCAAGGACACCAAGCTTTGGTGACCAATCCCGTCCTGCTCTAGCCACTCATACCACCTTTGTTTTGTTGTTTTCCCATCTTCTTCACTCTCCTCCTTGTCCTCTTCTGTGTTCTTCCTCTCTTGCTGATCACATTCTTCCCTCTTCTCCTCTTCCACACATTCTTCTGTCTTCTTCTCCTTCCATTCTTCAGAGAAATATGGTTTCTTCCCCGTCAATACCTCCAGCATCACAACACCCAAACTGTAGAC
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| CDS seq | ATGCTGGAGGTATTGACGGGGAAGAAACCATATTTCTCTGAAGAATGGAAGGAGAAGAAGACAGAAGAATGTGTGGAAGAGGAGAAGAGGGAAGAATGTGATCAGCAAGAGAGGAAGAACACAGAAGAGGACAAGGAGGAGAGTGAAGAAGATGGGAAAACAACAAAACAAAGGTGGTATGAGTGGCTAGAGCAGGACGGGATTGGTCACCAAAGCTTGGTGTCCTTGGCGCTGATACTGATCGAGGCGGGGGAGCTGTGGAAGTTTCTGGACAGGCGGCCGGCACCGGAGCCAACGCCGAGGCAGCTGGAGGCGGCGGAACTGGTGGCGCAGATAGCAGCTCGCTGCCTGCAGCTGCAGTGGGAGGAGCGGCCAGCCATTTCGGAAGTCGTGGCCAACCTCGAGAAGGCGCTCGAACTCGCCCGTTGCGACGGGTAG
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| Protein seq | MLEVLTGKKPYFSEEWKEKKTEECVEEEKREECDQQERKNTEEDKEESEEDGKTTKQRWYEWLEQDGIGHQSLVSLALILIEAGELWKFLDRRPAPEPTPRQLEAAELVAQIAARCLQLQWEERPAISEVVANLEKALELARCDG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g44415 | LOC_Os11g44415.1 | Chr11 | 26873372 | 26873913 | - | MSU_osa1r7 | ||
| CDS seq | ATGCTGGAGGTATTGACGGGGAAGAAACCATATTTCTCTGAAGAATGGAAGGAGAAGAAGACAGAAGAATGTGTGGAAGAGGAGAAGAGGGAAGAATGTGATCAGCAAGAGAGGAAGAACACAGAAGAGGACAAGGAGGAGAGTGAAGAAGATGGGAAAACAACAAAACAAAGGTGGTATGAGTGGCTAGAGCAGGACGGGATTGGTCACCAAAGCTTGGTGTCCTTGGCGCTGATACTGATCGAGGCGGGGGAGCTGTGGAAGTTTCTGGACAGGCGGCCGGCACCGGAGCCAACGCCGAGGCAGCTGGAGGCGGCGGAACTGGTGGCGCAGATAGCAGCTCGCTGCCTGCAGCTGCAGTGGGAGGAGCGGCCAGCCATTTCGGAAGTCGTGGCCAACCTCGAGAAGGCGCTCGAACTCGCCCGTTGCGACGGGTAG
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| Protein seq | MLEVLTGKKPYFSEEWKEKKTEECVEEEKREECDQQERKNTEEDKEESEEDGKTTKQRWYEWLEQDGIGHQSLVSLALILIEAGELWKFLDRRPAPEPTPRQLEAAELVAQIAARCLQLQWEERPAISEVVANLEKALELARCDG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.280592 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0665950 | RBH | 0.0 | 0.0 | 1.090018 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44250 | SBH | 0.0 | 0.180952 | 0.082941 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0665950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023000 | SBH | 0.101863 | 23.943014 | 0.311833 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023020 | SBH | 0.028885 | 0.0 | 0.072533 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022720 | SBH | 0.000000 | 6.946922 | 0.193026 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022410 | RBH | 0.0 | 0.709805 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022660 | SBH | 0.0 | 10.408031 | 0.888079 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0400400 | SBH | 0.028851 | 0.502086 | 0.0511855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023550 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0422900 | SBH | 0 | 0.014915 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023110 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023320 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022890 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022560 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022540 | SBH | 0.0 | 1.027365 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022800 | RBH | 0.0 | 1.135911 | 0.548201 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023240 | RBH | 0.0 | 0.000000 | 0.236641 |
