Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g42070 | OGI:11072350 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:25321310-25325479 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGTTGCCAACGCAAAGTATCCCTGTCTGTTTCCCCAGAACATAGACCGTCTGGTTCAGGAGTTGGCGGCCGGCGGGAGTCGACGAGGGCGGCGAAGAGTTGCCGGCGGTCGGCCACCGTCGCCTCCTCTGGAGCGGCGGTCGTCTGGAGTTAACAAAGTCGGCTGGAGGCTGCTGTTCGGCGCCCGTAGCCGGCCACGGCGACGGCGAGGTGAGGCGCGCTGCTCTGCACGAGCTGCCTCCGAGCGACAGATCTCGATCCTCCCTAGTGTGGATCTAGGGGCAAAAACGTCCACAAACTTATCAGAGAAAAGGAGGGGAAAGTGCATTTCGCAGCTCTGGCGGCATAGTTGAGCACTTGAGTGGTAAAATTGAGCTAGCTCTTTCTCCTCCTCCTCCTCTTCCTCTTCTTATTCTTGTTTTCTGATGTTCTTTTCATTTCCTGATTATTACCTTCTCGAGTTCCCACCAGATCGGACGGAGTGGCGGCGTTGTACCTGTCGTAGAGAAGAAGCGAACGGTGGGCGGCCGCAGGATGTCGGAGCTGGAGGTGTATAGCTTGCTGCAGAAGATGGCGGCGATGAGGGACGGCGGCGACTGGCCGGCCGGTGCGGAGTTGGAGTTGCAGGAGTTGTACACCGTCCTCGAGAAGGTGCAGCGCAAGATGGCTCACGCGGAGCCGCTGGTCGTCGTCGACAGCGGCAACTCCGCCCGCGCCGCCTACTCCCTCTTCCTCGCAGACCTTCGCCGCGTCACGTTCACCGTCGACCAAGCCCTCGATAGCTACTCCGCCAGCGCCCGCCGCTCCCCGTTCATGCACCGCGTGCGTTCGGTGGCTCTGATGGGGATGGCGGCATATGGTGTTTTCGCGTTTCTCTCGGCCCGTTCGTCTTCCCTGCTGCAGGAAAAGCTTTTGCCGCAGCCGCTAGAGCTGCGCCCCAAGATCGCCAGAAAGTTGGAAGAGGCCGTGAAGGACGTGAGGATGCTTCTCCGCCTCTTCAGTACCTACGTCGCCGATCTCCTGCCGCCGCCGGAGCACCAGCAGCCAGAGCCTGGTCTCGGCGCTGACCCCGACGATACGTGGTCTCTTGCCGATCAAAAAGAAGCCAACCTCCTTGTCAAAGGAAGAGAACAGGACAGATGTAAGGTACGGCAGATCCTCGAACATCCTGGAACGAAAGTGGTCGTAATTGTAGGAATGGCCGGGGCCGGGAAGACGAAGCTCACCAGGCATCTGCTGTGCGAAATGTGTAGTGCTACTACGCATGGCTTCAACTACTCTCTTTGGGTTACAGTGTCCCAAGATTTCAATCCAGAATGGATTTATCGGCAGGTGATGTCTAAGCTGAGCGATCAATTGAAGGCAGGCGAAGATGCTGAAAGCTTCTGGTGGTCTCTAAATTCAGATCTAAATGAAGGCTTGATCAATAAGAAGCATTTGCTTGTGCTCGATGGCGTCTGGAACGAAGACCCTCGTAAGTGGAAGGAACTGATGGATCTCCTCTACGGCAATTGCACGCAAAAGACCAAAATCATCGTCACTACCAGGATTCCTGCGGCGGCTGCTGCTATAAGCTCTGCAGTAATCTACCACCTGCACCCGTTCTCGGTGGAGCATACCTTGGAGATGCTCCAAACGATCAATGGGGAGCTGCCTGAGAAGTTGCTCGGCGGTGGCAGTAGCAACGCTACCGTGTCTACTGCTGCGGCTAAAGAATTGAGTAAGAGGAAGGTCGCAGAGAAATGCAGCGGTTTGCCCACCATCATAAAGTTCTTGAGCTCTTCTCTTGAATCTATCTGTGCAAACGAGGTTGCTGATCCACTAAAACAGTTTGATATGATGTGTGCTGGCAACCAAGGACTGCTGCACATCGCTGAGGCCAGCTATAACCATCTTCCACCACATCTGAAGCGGTGCTTCCTCTACTGCTCCTTGTTCCCATATCATCACATCTTTGATACTGACGAGATGATTAGCCTGATGGTTGCTGAAGGTTTAACACAGACTACAAGCAGGGAAGCCCAAGTGGATGGTGATATCAGCAGGCTTCAGAGTGAATGCTTTGATCTTGTCAATAATCCTGGGTCTAATGGGGGAATCAGAAGAGGATGCATGATGCATCGAGTATTGCACATCCTTGCACGGCACAAAGGGCAAGAACTATATAAAGCTATTGTGGGTGATCATTCTGCTGCTTTGAAAGAACATTCCAATATCAGATATATGTCTCTCACAGTTGATCATACAACTACGGAGCTCCCAGGGTCGCTGACTGCGCACACAGATTTGAGGACGCTGATCCTACTCAGAACGCAGAAGATGGTCTTGTCTGGTCAGAAGTCTGAAATCAAAGAGATCCCTTCTGATTACTGCCGCTATCTCACATACTTGCGTGTATTGGACCTGCAGGCAACCAAGATCAATAAGTTGCCTGAGAAAGTCGAAATGCTCTCAAATCTGAGGTATCTGAACCTTTCCCAAACCGATATTGACAAACTGCCTGAATCAATTGGCAGACTTCAGTACCTGGTATCCCTCAACATTTCTCAAACATGCATTGCGACAGTTCCAGATTATATTGGCAAAATTCACTCTTTGAGGTACCTCAATCTTTCTCAAACTGATATTGGAAAACTGCCTGATTCAATTTGTTCGCTCCGACTGTTGCAAACCTTGCAGCTATCACGCTGTGAAAAGCTTACCAAACTACCACAAAATATAGGATCCGTGACAAGTTTACAAAGGTTAGACCTAGAAGGTTGCTACTATCTATCCGAGATGCCTCAGGATATAAGCAACTTGAAAAATGTGAAGGAGCTAAATGTACTGGAATGTCCCTCACTGGATAAAATGCCTTGTGGGCTGAGTGCACTAACCAAGATTGAAGCATTGCCAAGGTACATTGCAACCAGTGGTGACAACAATCCCATATTGGAGCTGCGGGATTTGGTAAAATTGAAAAGACTGGGTTTGGAAAACATTGCAAATATTTCCAATGAGGATGCCGAGAAAATACAACTGCAAAAGAAACATGAGCTCGAGCATTTGACACTTAATTGCAATATGGATGCTGAAAACAGAAAATCAAGTTCTGAAGTGAAGGAGCTACTGGACTGTCTAGAGCCCAACCCAGGGTTGAAAATACTGGAGATCATTTCTTATGCAGGGGAAACGTTCCCGTGCTGGATGGCCAACACAAATCCACAACTTAAGAAGCTCACTCAGATCAGAATCATCAGATTGATTAATCTGAAGTGCAGCAGTCTCCCGCCGCTTGGGCAGCTACATCAACTTGAGACTCTAGAGATCAGTGGAATGAATGCCATAAAAAATGTCAGCAGTGAGCTACACGGTGAACTGAATGCTGATACATTCCGTTCTCTAAAGAAGATCGTCTTTTCTCATATGGTTAACCTACAATGTTGGCCGGTGGAAAATGGTGCTATATGTGAACATCTTAAAGAGTTGTCAATTATCCAATGCCCAAAATTTCACAAGCTGTCGATGAATCTTAATATTGAAAAGCTGACTCTATTGATGAGTCCTCACGAATTGCTTGGCAGAGAAGGATTGGCAGGTGTTGCTAGGAGTCTAAAAAGCCTATCTATTTCACTGTGTGAAGAGCTATCAGCATCATCAAATTGTGAGGGTCTAACGATGCTTTCTAACCTTGAGGAGTTAAAGATTTCTGGATGTGATGAACTGGAGAACTTACCGCCGGGTATGGAAAATCTTACTGCACTCAAAAGATTGTCAGTTATTGGATGCCAGAAGTTCCAAAATTTAACGGACTTACTGGAATGCACTGCTCTGAGCTCCCTGGTCATATCAGATTGTCCAATGCTACCATCCGTCCCACAGGGTTTGAGAGGGATCACAACTTGCGAGTAAACTAACAGCGGTATAGTTCAAAAACAGATAGAAGAACTCTAGCACAAATATATCAAGTATGTGAATGACCAAGCTTTTGCGTCATTTTTTCTCATAATCCTATCCACATACAGTTTCAATTTTTAGATTTATTTATAGATGCCAAAAATGTTTCTGATCGGTATCTCCAATGTATTTTATATAAGTTTCACGGCTATCAAGATACACTATCCTTGTTACTTTGCCTTTATTACTTACATCGATGATACACTAGCAGGTGGATTTTCATTAAATTTTATTG
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| CDS seq | ATGTCGGAGCTGGAGGTGTATAGCTTGCTGCAGAAGATGGCGGCGATGAGGGACGGCGGCGACTGGCCGGCCGGTGCGGAGTTGGAGTTGCAGGAGTTGTACACCGTCCTCGAGAAGGTGCAGCGCAAGATGGCTCACGCGGAGCCGCTGGTCGTCGTCGACAGCGGCAACTCCGCCCGCGCCGCCTACTCCCTCTTCCTCGCAGACCTTCGCCGCGTCACGTTCACCGTCGACCAAGCCCTCGATAGCTACTCCGCCAGCGCCCGCCGCTCCCCGTTCATGCACCGCGTGCGTTCGGTGGCTCTGATGGGGATGGCGGCATATGGTGTTTTCGCGTTTCTCTCGGCCCGTTCGTCTTCCCTGCTGCAGGAAAAGCTTTTGCCGCAGCCGCTAGAGCTGCGCCCCAAGATCGCCAGAAAGTTGGAAGAGGCCGTGAAGGACGTGAGGATGCTTCTCCGCCTCTTCAGTACCTACGTCGCCGATCTCCTGCCGCCGCCGGAGCACCAGCAGCCAGAGCCTGGTCTCGGCGCTGACCCCGACGATACGTGGTCTCTTGCCGATCAAAAAGAAGCCAACCTCCTTGTCAAAGGAAGAGAACAGGACAGATGTAAGGTACGGCAGATCCTCGAACATCCTGGAACGAAAGTGGTCGTAATTGTAGGAATGGCCGGGGCCGGGAAGACGAAGCTCACCAGGCATCTGCTGTGCGAAATGTGTAGTGCTACTACGCATGGCTTCAACTACTCTCTTTGGGTTACAGTGTCCCAAGATTTCAATCCAGAATGGATTTATCGGCAGGTGATGTCTAAGCTGAGCGATCAATTGAAGGCAGGCGAAGATGCTGAAAGCTTCTGGTGGTCTCTAAATTCAGATCTAAATGAAGGCTTGATCAATAAGAAGCATTTGCTTGTGCTCGATGGCGTCTGGAACGAAGACCCTCGTAAGTGGAAGGAACTGATGGATCTCCTCTACGGCAATTGCACGCAAAAGACCAAAATCATCGTCACTACCAGGATTCCTGCGGCGGCTGCTGCTATAAGCTCTGCAGTAATCTACCACCTGCACCCGTTCTCGGTGGAGCATACCTTGGAGATGCTCCAAACGATCAATGGGGAGCTGCCTGAGAAGTTGCTCGGCGGTGGCAGTAGCAACGCTACCGTGTCTACTGCTGCGGCTAAAGAATTGAGTAAGAGGAAGGTCGCAGAGAAATGCAGCGGTTTGCCCACCATCATAAAGTTCTTGAGCTCTTCTCTTGAATCTATCTGTGCAAACGAGGTTGCTGATCCACTAAAACAGTTTGATATGATGTGTGCTGGCAACCAAGGACTGCTGCACATCGCTGAGGCCAGCTATAACCATCTTCCACCACATCTGAAGCGGTGCTTCCTCTACTGCTCCTTGTTCCCATATCATCACATCTTTGATACTGACGAGATGATTAGCCTGATGGTTGCTGAAGGTTTAACACAGACTACAAGCAGGGAAGCCCAAGTGGATGGTGATATCAGCAGGCTTCAGAGTGAATGCTTTGATCTTGTCAATAATCCTGGGTCTAATGGGGGAATCAGAAGAGGATGCATGATGCATCGAGTATTGCACATCCTTGCACGGCACAAAGGGCAAGAACTATATAAAGCTATTGTGGGTGATCATTCTGCTGCTTTGAAAGAACATTCCAATATCAGATATATGTCTCTCACAGTTGATCATACAACTACGGAGCTCCCAGGGTCGCTGACTGCGCACACAGATTTGAGGACGCTGATCCTACTCAGAACGCAGAAGATGGTCTTGTCTGGTCAGAAGTCTGAAATCAAAGAGATCCCTTCTGATTACTGCCGCTATCTCACATACTTGCGTGTATTGGACCTGCAGGCAACCAAGATCAATAAGTTGCCTGAGAAAGTCGAAATGCTCTCAAATCTGAGGTATCTGAACCTTTCCCAAACCGATATTGACAAACTGCCTGAATCAATTGGCAGACTTCAGTACCTGGTATCCCTCAACATTTCTCAAACATGCATTGCGACAGTTCCAGATTATATTGGCAAAATTCACTCTTTGAGGTACCTCAATCTTTCTCAAACTGATATTGGAAAACTGCCTGATTCAATTTGTTCGCTCCGACTGTTGCAAACCTTGCAGCTATCACGCTGTGAAAAGCTTACCAAACTACCACAAAATATAGGATCCGTGACAAGTTTACAAAGGTTAGACCTAGAAGGTTGCTACTATCTATCCGAGATGCCTCAGGATATAAGCAACTTGAAAAATGTGAAGGAGCTAAATGTACTGGAATGTCCCTCACTGGATAAAATGCCTTGTGGGCTGAGTGCACTAACCAAGATTGAAGCATTGCCAAGGTACATTGCAACCAGTGGTGACAACAATCCCATATTGGAGCTGCGGGATTTGGTAAAATTGAAAAGACTGGGTTTGGAAAACATTGCAAATATTTCCAATGAGGATGCCGAGAAAATACAACTGCAAAAGAAACATGAGCTCGAGCATTTGACACTTAATTGCAATATGGATGCTGAAAACAGAAAATCAAGTTCTGAAGTGAAGGAGCTACTGGACTGTCTAGAGCCCAACCCAGGGTTGAAAATACTGGAGATCATTTCTTATGCAGGGGAAACGTTCCCGTGCTGGATGGCCAACACAAATCCACAACTTAAGAAGCTCACTCAGATCAGAATCATCAGATTGATTAATCTGAAGTGCAGCAGTCTCCCGCCGCTTGGGCAGCTACATCAACTTGAGACTCTAGAGATCAGTGGAATGAATGCCATAAAAAATGTCAGCAGTGAGCTACACGGTGAACTGAATGCTGATACATTCCGTTCTCTAAAGAAGATCGTCTTTTCTCATATGGTTAACCTACAATGTTGGCCGGTGGAAAATGGTGCTATATGTGAACATCTTAAAGAGTTGTCAATTATCCAATGCCCAAAATTTCACAAGCTGTCGATGAATCTTAATATTGAAAAGCTGACTCTATTGATGAGTCCTCACGAATTGCTTGGCAGAGAAGGATTGGCAGGTGTTGCTAGGAGTCTAAAAAGCCTATCTATTTCACTGTGTGAAGAGCTATCAGCATCATCAAATTGTGAGGGTCTAACGATGCTTTCTAACCTTGAGGAGTTAAAGATTTCTGGATGTGATGAACTGGAGAACTTACCGCCGGGTATGGAAAATCTTACTGCACTCAAAAGATTGTCAGTTATTGGATGCCAGAAGTTCCAAAATTTAACGGACTTACTGGAATGCACTGCTCTGAGCTCCCTGGTCATATCAGATTGTCCAATGCTACCATCCGTCCCACAGGGTTTGAGAGGGATCACAACTTGCGAGTAA
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| Protein seq | MSELEVYSLLQKMAAMRDGGDWPAGAELELQELYTVLEKVQRKMAHAEPLVVVDSGNSARAAYSLFLADLRRVTFTVDQALDSYSASARRSPFMHRVRSVALMGMAAYGVFAFLSARSSSLLQEKLLPQPLELRPKIARKLEEAVKDVRMLLRLFSTYVADLLPPPEHQQPEPGLGADPDDTWSLADQKEANLLVKGREQDRCKVRQILEHPGTKVVVIVGMAGAGKTKLTRHLLCEMCSATTHGFNYSLWVTVSQDFNPEWIYRQVMSKLSDQLKAGEDAESFWWSLNSDLNEGLINKKHLLVLDGVWNEDPRKWKELMDLLYGNCTQKTKIIVTTRIPAAAAAISSAVIYHLHPFSVEHTLEMLQTINGELPEKLLGGGSSNATVSTAAAKELSKRKVAEKCSGLPTIIKFLSSSLESICANEVADPLKQFDMMCAGNQGLLHIAEASYNHLPPHLKRCFLYCSLFPYHHIFDTDEMISLMVAEGLTQTTSREAQVDGDISRLQSECFDLVNNPGSNGGIRRGCMMHRVLHILARHKGQELYKAIVGDHSAALKEHSNIRYMSLTVDHTTTELPGSLTAHTDLRTLILLRTQKMVLSGQKSEIKEIPSDYCRYLTYLRVLDLQATKINKLPEKVEMLSNLRYLNLSQTDIDKLPESIGRLQYLVSLNISQTCIATVPDYIGKIHSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCEKLTKLPQNIGSVTSLQRLDLEGCYYLSEMPQDISNLKNVKELNVLECPSLDKMPCGLSALTKIEALPRYIATSGDNNPILELRDLVKLKRLGLENIANISNEDAEKIQLQKKHELEHLTLNCNMDAENRKSSSEVKELLDCLEPNPGLKILEIISYAGETFPCWMANTNPQLKKLTQIRIIRLINLKCSSLPPLGQLHQLETLEISGMNAIKNVSSELHGELNADTFRSLKKIVFSHMVNLQCWPVENGAICEHLKELSIIQCPKFHKLSMNLNIEKLTLLMSPHELLGREGLAGVARSLKSLSISLCEELSASSNCEGLTMLSNLEELKISGCDELENLPPGMENLTALKRLSVIGCQKFQNLTDLLECTALSSLVISDCPMLPSVPQGLRGITTCE |
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| Function | Putative disease resistance protein At3g14460 [UniProtKB/Swiss-Prot:Q9LRR5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g42070 | LOC_Os11g42070.1 | Chr11 | 25321310 | 25325479 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGGAGCTGGAGGTGTATAGCTTGCTGCAGAAGATGGCGGCGATGAGGGACGGCGGCGACTGGCCGGCCGGTGCGGAGTTGGAGTTGCAGGAGTTGTACACCGTCCTCGAGAAGGTGCAGCGCAAGATGGCTCACGCGGAGCCGCTGGTCGTCGTCGACAGCGGCAACTCCGCCCGCGCCGCCTACTCCCTCTTCCTCGCAGACCTTCGCCGCGTCACGTTCACCGTCGACCAAGCCCTCGATAGCTACTCCGCCAGCGCCCGCCGCTCCCCGTTCATGCACCGCGTGCGTTCGGTGGCTCTGATGGGGATGGCGGCATATGGTGTTTTCGCGTTTCTCTCGGCCCGTTCGTCTTCCCTGCTGCAGGAAAAGCTTTTGCCGCAGCCGCTAGAGCTGCGCCCCAAGATCGCCAGAAAGTTGGAAGAGGCCGTGAAGGACGTGAGGATGCTTCTCCGCCTCTTCAGTACCTACGTCGCCGATCTCCTGCCGCCGCCGGAGCACCAGCAGCCAGAGCCTGGTCTCGGCGCTGACCCCGACGATACGTGGTCTCTTGCCGATCAAAAAGAAGCCAACCTCCTTGTCAAAGGAAGAGAACAGGACAGATGTAAGGTACGGCAGATCCTCGAACATCCTGGAACGAAAGTGGTCGTAATTGTAGGAATGGCCGGGGCCGGGAAGACGAAGCTCACCAGGCATCTGCTGTGCGAAATGTGTAGTGCTACTACGCATGGCTTCAACTACTCTCTTTGGGTTACAGTGTCCCAAGATTTCAATCCAGAATGGATTTATCGGCAGGTGATGTCTAAGCTGAGCGATCAATTGAAGGCAGGCGAAGATGCTGAAAGCTTCTGGTGGTCTCTAAATTCAGATCTAAATGAAGGCTTGATCAATAAGAAGCATTTGCTTGTGCTCGATGGCGTCTGGAACGAAGACCCTCGTAAGTGGAAGGAACTGATGGATCTCCTCTACGGCAATTGCACGCAAAAGACCAAAATCATCGTCACTACCAGGATTCCTGCGGCGGCTGCTGCTATAAGCTCTGCAGTAATCTACCACCTGCACCCGTTCTCGGTGGAGCATACCTTGGAGATGCTCCAAACGATCAATGGGGAGCTGCCTGAGAAGTTGCTCGGCGGTGGCAGTAGCAACGCTACCGTGTCTACTGCTGCGGCTAAAGAATTGAGTAAGAGGAAGGTCGCAGAGAAATGCAGCGGTTTGCCCACCATCATAAAGTTCTTGAGCTCTTCTCTTGAATCTATCTGTGCAAACGAGGTTGCTGATCCACTAAAACAGTTTGATATGATGTGTGCTGGCAACCAAGGACTGCTGCACATCGCTGAGGCCAGCTATAACCATCTTCCACCACATCTGAAGCGGTGCTTCCTCTACTGCTCCTTGTTCCCATATCATCACATCTTTGATACTGACGAGATGATTAGCCTGATGGTTGCTGAAGGTTTAACACAGACTACAAGCAGGGAAGCCCAAGTGGATGGTGATATCAGCAGGCTTCAGAGTGAATGCTTTGATCTTGTCAATAATCCTGGGTCTAATGGGGGAATCAGAAGAGGATGCATGATGCATCGAGTATTGCACATCCTTGCACGGCACAAAGGGCAAGAACTATATAAAGCTATTGTGGGTGATCATTCTGCTGCTTTGAAAGAACATTCCAATATCAGATATATGTCTCTCACAGTTGATCATACAACTACGGAGCTCCCAGGGTCGCTGACTGCGCACACAGATTTGAGGACGCTGATCCTACTCAGAACGCAGAAGATGGTCTTGTCTGGTCAGAAGTCTGAAATCAAAGAGATCCCTTCTGATTACTGCCGCTATCTCACATACTTGCGTGTATTGGACCTGCAGGCAACCAAGATCAATAAGTTGCCTGAGAAAGTCGAAATGCTCTCAAATCTGAGGTATCTGAACCTTTCCCAAACCGATATTGACAAACTGCCTGAATCAATTGGCAGACTTCAGTACCTGGTATCCCTCAACATTTCTCAAACATGCATTGCGACAGTTCCAGATTATATTGGCAAAATTCACTCTTTGAGGTACCTCAATCTTTCTCAAACTGATATTGGAAAACTGCCTGATTCAATTTGTTCGCTCCGACTGTTGCAAACCTTGCAGCTATCACGCTGTGAAAAGCTTACCAAACTACCACAAAATATAGGATCCGTGACAAGTTTACAAAGGTTAGACCTAGAAGGTTGCTACTATCTATCCGAGATGCCTCAGGATATAAGCAACTTGAAAAATGTGAAGGAGCTAAATGTACTGGAATGTCCCTCACTGGATAAAATGCCTTGTGGGCTGAGTGCACTAACCAAGATTGAAGCATTGCCAAGGTACATTGCAACCAGTGGTGACAACAATCCCATATTGGAGCTGCGGGATTTGGTAAAATTGAAAAGACTGGGTTTGGAAAACATTGCAAATATTTCCAATGAGGATGCCGAGAAAATACAACTGCAAAAGAAACATGAGCTCGAGCATTTGACACTTAATTGCAATATGGATGCTGAAAACAGAAAATCAAGTTCTGAAGTGAAGGAGCTACTGGACTGTCTAGAGCCCAACCCAGGGTTGAAAATACTGGAGATCATTTCTTATGCAGGGGAAACGTTCCCGTGCTGGATGGCCAACACAAATCCACAACTTAAGAAGCTCACTCAGATCAGAATCATCAGATTGATTAATCTGAAGTGCAGCAGTCTCCCGCCGCTTGGGCAGCTACATCAACTTGAGACTCTAGAGATCAGTGGAATGAATGCCATAAAAAATGTCAGCAGTGAGCTACACGGTGAACTGAATGCTGATACATTCCGTTCTCTAAAGAAGATCGTCTTTTCTCATATGGTTAACCTACAATGTTGGCCGGTGGAAAATGGTGCTATATGTGAACATCTTAAAGAGTTGTCAATTATCCAATGCCCAAAATTTCACAAGCTGTCGATGAATCTTAATATTGAAAAGCTGACTCTATTGATGAGTCCTCACGAATTGCTTGGCAGAGAAGGATTGGCAGGTGTTGCTAGGAGTCTAAAAAGCCTATCTATTTCACTGTGTGAAGAGCTATCAGCATCATCAAATTGTGAGGGTCTAACGATGCTTTCTAACCTTGAGGAGTTAAAGATTTCTGGATGTGATGAACTGGAGAACTTACCGCCGGGTATGGAAAATCTTACTGCACTCAAAAGATTGTCAGTTATTGGATGCCAGAAGTTCCAAAATTTAACGGACTTACTGGAATGCACTGCTCTGAGCTCCCTGGTCATATCAGATTGTCCAATGCTACCATCCGTCCCACAGGGTTTGAGAGGGATCACAACTTGCGAGTAA
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| Protein seq | MSELEVYSLLQKMAAMRDGGDWPAGAELELQELYTVLEKVQRKMAHAEPLVVVDSGNSARAAYSLFLADLRRVTFTVDQALDSYSASARRSPFMHRVRSVALMGMAAYGVFAFLSARSSSLLQEKLLPQPLELRPKIARKLEEAVKDVRMLLRLFSTYVADLLPPPEHQQPEPGLGADPDDTWSLADQKEANLLVKGREQDRCKVRQILEHPGTKVVVIVGMAGAGKTKLTRHLLCEMCSATTHGFNYSLWVTVSQDFNPEWIYRQVMSKLSDQLKAGEDAESFWWSLNSDLNEGLINKKHLLVLDGVWNEDPRKWKELMDLLYGNCTQKTKIIVTTRIPAAAAAISSAVIYHLHPFSVEHTLEMLQTINGELPEKLLGGGSSNATVSTAAAKELSKRKVAEKCSGLPTIIKFLSSSLESICANEVADPLKQFDMMCAGNQGLLHIAEASYNHLPPHLKRCFLYCSLFPYHHIFDTDEMISLMVAEGLTQTTSREAQVDGDISRLQSECFDLVNNPGSNGGIRRGCMMHRVLHILARHKGQELYKAIVGDHSAALKEHSNIRYMSLTVDHTTTELPGSLTAHTDLRTLILLRTQKMVLSGQKSEIKEIPSDYCRYLTYLRVLDLQATKINKLPEKVEMLSNLRYLNLSQTDIDKLPESIGRLQYLVSLNISQTCIATVPDYIGKIHSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCEKLTKLPQNIGSVTSLQRLDLEGCYYLSEMPQDISNLKNVKELNVLECPSLDKMPCGLSALTKIEALPRYIATSGDNNPILELRDLVKLKRLGLENIANISNEDAEKIQLQKKHELEHLTLNCNMDAENRKSSSEVKELLDCLEPNPGLKILEIISYAGETFPCWMANTNPQLKKLTQIRIIRLINLKCSSLPPLGQLHQLETLEISGMNAIKNVSSELHGELNADTFRSLKKIVFSHMVNLQCWPVENGAICEHLKELSIIQCPKFHKLSMNLNIEKLTLLMSPHELLGREGLAGVARSLKSLSISLCEELSASSNCEGLTMLSNLEELKISGCDELENLPPGMENLTALKRLSVIGCQKFQNLTDLLECTALSSLVISDCPMLPSVPQGLRGITTCE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g42070 | LOC_Os11g42070.2 | Chr11 | 25321310 | 25325479 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGGAGCTGGAGGTGTATAGCTTGCTGCAGAAGATGGCGGCGATGAGGGACGGCGGCGACTGGCCGGCCGGTGCGGAGTTGGAGTTGCAGGAGTTGTACACCGTCCTCGAGAAGGTGCAGCGCAAGATGGCTCACGCGGAGCCGCTGGTCGTCGTCGACAGCGGCAACTCCGCCCGCGCCGCCTACTCCCTCTTCCTCGCAGACCTTCGCCGCGTCACGTTCACCGTCGACCAAGCCCTCGATAGCTACTCCGCCAGCGCCCGCCGCTCCCCGTTCATGCACCGCGTGCGTTCGGTGGCTCTGATGGGGATGGCGGCATATGGTGTTTTCGCGTTTCTCTCGGCCCGTTCGTCTTCCCTGCTGCAGGAAAAGCTTTTGCCGCAGCCGCTAGAGCTGCGCCCCAAGATCGCCAGAAAGTTGGAAGAGGCCGTGAAGGACGTGAGGATGCTTCTCCGCCTCTTCAGTACCTACGTCGCCGATCTCCTGCCGCCGCCGGAGCACCAGCAGCCAGAGCCTGGTCTCGGCGCTGACCCCGACGATACGTGGTCTCTTGCCGATCAAAAAGAAGCCAACCTCCTTGTCAAAGGAAGAGAACAGGACAGATGTAAGGTACGGCAGATCCTCGAACATCCTGGAACGAAAGTGGTCGTAATTGTAGGAATGGCCGGGGCCGGGAAGACGAAGCTCACCAGGCATCTGCTGTGCGAAATGTGTAGTGCTACTACGCATGGCTTCAACTACTCTCTTTGGGTTACAGTGTCCCAAGATTTCAATCCAGAATGGATTTATCGGCAGGTGATGTCTAAGCTGAGCGATCAATTGAAGGCAGGCGAAGATGCTGAAAGCTTCTGGTGGTCTCTAAATTCAGATCTAAATGAAGGCTTGATCAATAAGAAGCATTTGCTTGTGCTCGATGGCGTCTGGAACGAAGACCCTCGTAAGTGGAAGGAACTGATGGATCTCCTCTACGGCAATTGCACGCAAAAGACCAAAATCATCGTCACTACCAGGATTCCTGCGGCGGCTGCTGCTATAAGCTCTGCAGTAATCTACCACCTGCACCCGTTCTCGGTGGAGCATACCTTGGAGATGCTCCAAACGATCAATGGGGAGCTGCCTGAGAAGTTGCTCGGCGGTGGCAGTAGCAACGCTACCGTGTCTACTGCTGCGGCTAAAGAATTGAGTAAGAGGAAGGTCGCAGAGAAATGCAGCGGTTTGCCCACCATCATAAAGTTCTTGAGCTCTTCTCTTGAATCTATCTGTGCAAACGAGGTTGCTGATCCACTAAAACAGTTTGATATGATGTGTGCTGGCAACCAAGGACTGCTGCACATCGCTGAGGCCAGCTATAACCATCTTCCACCACATCTGAAGCGGTGCTTCCTCTACTGCTCCTTGTTCCCATATCATCACATCTTTGATACTGACGAGATGATTAGCCTGATGGTTGCTGAAGGTTTAACACAGACTACAAGCAGGGAAGCCCAAGTGGATGGTGATATCAGCAGGCTTCAGAGTGAATGCTTTGATCTTGTCAATAATCCTGGGTCTAATGGGGGAATCAGAAGAGGATGCATGATGCATCGAGTATTGCACATCCTTGCACGGCACAAAGGGCAAGAACTATATAAAGCTATTGTGGGTGATCATTCTGCTGCTTTGAAAGAACATTCCAATATCAGATATATGTCTCTCACAGTTGATCATACAACTACGGAGCTCCCAGGGTCGCTGACTGCGCACACAGATTTGAGGACGCTGATCCTACTCAGAACGCAGAAGATGGTCTTGTCTGGTCAGAAGTCTGAAATCAAAGAGATCCCTTCTGATTACTGCCGCTATCTCACATACTTGCGTGTATTGGACCTGCAGGCAACCAAGATCAATAAGTTGCCTGAGAAAGTCGAAATGCTCTCAAATCTGAGGTATCTGAACCTTTCCCAAACCGATATTGACAAACTGCCTGAATCAATTGGCAGACTTCAGTACCTGGTATCCCTCAACATTTCTCAAACATGCATTGCGACAGTTCCAGATTATATTGGCAAAATTCACTCTTTGAGGTACCTCAATCTTTCTCAAACTGATATTGGAAAACTGCCTGATTCAATTTGTTCGCTCCGACTGTTGCAAACCTTGCAGCTATCACGCTGTGAAAAGCTTACCAAACTACCACAAAATATAGGATCCGTGACAAGTTTACAAAGGTTAGACCTAGAAGGTTGCTACTATCTATCCGAGATGCCTCAGGATATAAGCAACTTGAAAAATGTGAAGGAGCTAAATGTACTGGAATGTCCCTCACTGGATAAAATGCCTTGTGGGCTGAGTGCACTAACCAAGATTGAAGCATTGCCAAGGTACATTGCAACCAGTGGTGACAACAATCCCATATTGGAGCTGCGGGATTTGGTAAAATTGAAAAGACTGGGTTTGGAAAACATTGCAAATATTTCCAATGAGGATGCCGAGAAAATACAACTGCAAAAGAAACATGAGCTCGAGCATTTGACACTTAATTGCAATATGGATGCTGAAAACAGAAAATCAAGTTCTGAAGTGAAGGAGCTACTGGACTGTCTAGAGCCCAACCCAGGGTTGAAAATACTGGAGATCATTTCTTATGCAGGGGAAACGTTCCCGTGCTGGATGGCCAACACAAATCCACAACTTAAGAAGCTCACTCAGATCAGAATCATCAGATTGATTAATCTGAAGTGCAGCAGTCTCCCGCCGCTTGGGCAGCTACATCAACTTGAGACTCTAGAGATCAGTGGAATGAATGCCATAAAAAATGTCAGCAGTGAGCTACACGGTGAACTGAATGCTGATACATTCCGTTCTCTAAAGAAGATCGTCTTTTCTCATATGGTTAACCTACAATGTTGGCCGGTGGAAAATGGTGCTATATGTGAACATCTTAAAGAGTTGTCAATTATCCAATGCCCAAAATTTCACAAGCTGTCGATGAATCTTAATATTGAAAAGCTGACTCTATTGATGAGTCCTCACGAATTGCTTGGCAGAGAAGGATTGGCAGGTGTTGCTAGGAGTCTAAAAAGCCTATCTATTTCACTGTGTGAAGAGCTATCAGCATCATCAAATTGTGAGGGTCTAACGATGCTTTCTAACCTTGAGGAGTTAAAGATTTCTGGATGTGATGAACTGGAGAACTTACCGCCGGGTATGGAAAATCTTACTGCACTCAAAAGATTGTCAGTTATTGGATGCCAGAAGTTCCAAAATTTAACGGACTTACTGGAATGCACTGCTCTGAGCTCCCTGGTCATATCAGATTGTCCAATGCTACCATCCGTCCCACAGGGTTTGAGAGGGATCACAACTTGCGAGTAA
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| Protein seq | MSELEVYSLLQKMAAMRDGGDWPAGAELELQELYTVLEKVQRKMAHAEPLVVVDSGNSARAAYSLFLADLRRVTFTVDQALDSYSASARRSPFMHRVRSVALMGMAAYGVFAFLSARSSSLLQEKLLPQPLELRPKIARKLEEAVKDVRMLLRLFSTYVADLLPPPEHQQPEPGLGADPDDTWSLADQKEANLLVKGREQDRCKVRQILEHPGTKVVVIVGMAGAGKTKLTRHLLCEMCSATTHGFNYSLWVTVSQDFNPEWIYRQVMSKLSDQLKAGEDAESFWWSLNSDLNEGLINKKHLLVLDGVWNEDPRKWKELMDLLYGNCTQKTKIIVTTRIPAAAAAISSAVIYHLHPFSVEHTLEMLQTINGELPEKLLGGGSSNATVSTAAAKELSKRKVAEKCSGLPTIIKFLSSSLESICANEVADPLKQFDMMCAGNQGLLHIAEASYNHLPPHLKRCFLYCSLFPYHHIFDTDEMISLMVAEGLTQTTSREAQVDGDISRLQSECFDLVNNPGSNGGIRRGCMMHRVLHILARHKGQELYKAIVGDHSAALKEHSNIRYMSLTVDHTTTELPGSLTAHTDLRTLILLRTQKMVLSGQKSEIKEIPSDYCRYLTYLRVLDLQATKINKLPEKVEMLSNLRYLNLSQTDIDKLPESIGRLQYLVSLNISQTCIATVPDYIGKIHSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCEKLTKLPQNIGSVTSLQRLDLEGCYYLSEMPQDISNLKNVKELNVLECPSLDKMPCGLSALTKIEALPRYIATSGDNNPILELRDLVKLKRLGLENIANISNEDAEKIQLQKKHELEHLTLNCNMDAENRKSSSEVKELLDCLEPNPGLKILEIISYAGETFPCWMANTNPQLKKLTQIRIIRLINLKCSSLPPLGQLHQLETLEISGMNAIKNVSSELHGELNADTFRSLKKIVFSHMVNLQCWPVENGAICEHLKELSIIQCPKFHKLSMNLNIEKLTLLMSPHELLGREGLAGVARSLKSLSISLCEELSASSNCEGLTMLSNLEELKISGCDELENLPPGMENLTALKRLSVIGCQKFQNLTDLLECTALSSLVISDCPMLPSVPQGLRGITTCE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.276758 | 0.163004 | 0.578039 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0640300 | RBH | 0.348590 | 0.241199 | 2.485782 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42010 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0640300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021560 | RBH | 0.355755 | 4.291823 | 4.107610 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021500 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021390 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020870 | RBH | 0.018045 | 0.182074 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021400 | SBH | 0.0 | 2.192442 | 0.357784 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0381700 | RBH | 0.846561 | 4.6063575 | 8.7330505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021940 | RBH | 0.0 | 0.040169 | 0.215853 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0401700 | RBH | 1.9996505 | 6.361667 | 9.36111 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021770 | RBH | 0.048357 | 0.107816 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021870 | RBH | 0.160953 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021520 | RBH | 1.393508 | 5.479032 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021120 | RBH | 0.072209 | 0.0 | 0.433110 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021280 | RBH | 0.132961 | 1.563326 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021250 | SBH | 0.0 | 0.562846 | 0.281622 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021760 | SBH | 0.0 | 0.000000 | 0.0 |
