Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g40810 | OGI:11070020 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:24421633-24424532 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAACTGTCCAATGCTGAAAATGTTTCTTTGATTTTGGTGATTTCAGCATAAACATCTTGGATTAATGGACGATCTCCAGGTGACTCCAGAGAGCATTGTAGACCAATTTTCAGCATCTGTGTGATACATCTCTCCATTATGCTCATTTCATCAACGTCATTATCTAAATCATGGTTCCTTCCTTCATGTGTATACCGTGGAATGATACTGGCCTCTAAAATCTCAACAACATTATGTGGATATGCACAGTCCACTAATTTGTGAATGTTTAGCCCATCCTTGAACATGTCATCAGTTGGATGCTTTCCTGTGAGCATTTCTAGCAGAATAACTCCATAGCTATAGACATCGCCTGCAGTTGATATTTGGCAACCCATCCCATATTCTGCATTCAATATTAACAGAATTGTTTTAAAAATATTCTAATTTGCTAAGCTGGCTTCAAGAGACAGTATATGAAGTAAGTATTCAGTCCTTAAAATAACAAGGTTAGTAGCGAAAGCAAGAATTCACATGTGAAGAAAACAAGCTTAAATTTCTTGGATGATAGTCGTATATGTATTTCTGAATAAGATACGCCTAAATTAGTCAATATGAAGAATATATAGAAGCATGAATGTTCACCTGGTGCAATATATCCAACTGACCCTCTTGGTCCTGCTATGCTTGATAAACTGTTAAGCCCTGCTGAAGAATGGTTACAGATAAAGTCACTAACATGAGCAACCATGTCCTCATCCAAAAGTACATTACTTGGCTTCAAATCACAGTGAACAAGCGGAGGTGTGCACCAGTTATGGAGATAATCCAAGGCAGCAGCAATGTCCGTTGCTATCTGTATAATTGATCCTAGACCTAATGGTCTTCTTTGTCGATGTTTTTGTACTTTTGGATGAAGCCAACTTTCTAGGTTACCATTAGCCATGTACTCCAAAATTAGAGCTTTAAACTCTTTTCCCATTGGATCGAAGGAGGAACATAGACTAATCACATGCATGAGATTTCGGTGCCGAGTGTTCCTTAGCACCTCGCATTCAGCCAAGAAGTTATTTGATGCTCCGATTTCGTCAAGTTTGAATACCTTAATGGCAACTGGCTCTGCATCAATTTTGAATCTACCTATGTAGACCACCCCAAATGCCCCGGAACCAACCAAGTTGTCTGATGAAAATTCATTGGTAGCTTTGGCAATCTCAGCATATGTGAACTTCCACTCCTTACAAGACTGATCAATTTGCTTTCCCAGGTTATTTCGCTTCTTGTAAAGAAATGTGGCAACACATATCATTAGGAATGTAGCAGCACTAGCAAGTGGGACAACTATTGGGATGATATAGGATTTCTTGTTTGTTTTGGATGATGTTGATGTGCAAAGTGGTAATTGCAGCATTGAAGACCCTGTGCATAATTCCCTATTCCCTTGTACGAACACCTTACTTGAATTGCTAAATACACCATATGTAGGAACCATTCCCTCGAGATTGTTGAAGGATAAGTTGAGGAGCTGCAAAGAGCTGAATGTCTCAAAAAATTTTGGGATTTCACCAGACAAGTTATTCTGTGAGAGATCCATCTCATTGATGCCTCTTAAACTCGTGAAGGAGTCCGGGATACTCCCATTTAGAAAATTCACTTCTAATTGTAGGGACTCCAAGTGAAGGCACTCACCAAGTGTATGCGGAATCTCTCCAGATAATTGGTTGTTGGAAATGTTAATAGAGTCAAGGTTAATTAAACTACCAATCTTAGATGGGATGGGTCCACTAAATCCATTGTAAGACAAATCTAGGCCTTTTGAAAGTGAGGAGATCGACAAGAGCTCGGGTGGAATGATTCCATTGAAGGTATTACATGAGAGGTTCAGCATTACCAAATTTTTGCACCTTCCTATGCTTGAAGGTATGGCCCCACTAAAGTTGTTCTCTTGGAGATAAAGCTCACCTAATTTTTCAAGTTTTCCAATTGATTGTGGGATTTCCCCAGAAAGATTATTGCGATGTAACCCTAGGACAAACAAGTTTACAAGGTTACAAAGTGTTTCAGGAATGTCCCCTGAGATTAAGTTTTCTGCTAGATGAAGAACAGTGAGGTTATTGAGGTTTCCTATCTCTGAAGGTATGGTCCCTGCAATTCTGTTGTTGGTCATATATAACGTTTGCAAGCTTCCTGGGAGATTGCCAATGGAACTAGGTAAGATTCCATGAATCCTGTTGTTATCCAAATATATTGCCACCAGTTTGGTAGAGTTTATTTTTGAGGACAAGGATGTCCAGTCTACAGATTCAAATAGGTTGGCACCAAGGTCCAACTGGGTCAAGTTTTGCAAAGCCCAGAAAGAAGGAACAACACCAGTGAATGTGTTATCACGGACCTCTAGCACTTGAAGGTTCAAGGCATTAACTAAAGAGGTTGGCAGTGTGTCGGTGACATGGGACCGGGAGTATCACTACTAAAGGCTTGGACAGGAGCAATCACCCACGAGGCCTGACCCCCTTGGGGGGGTCGGGCCCGAGGGTGACGTGGCCGCCCCCCCTCTTTGTCTCCCCGAGGGGTCAGACCGCTTCCGTTTCAGCCCTGAGGGCTGAGGCGCCCCGACCCCTTGCAGGTTTGGCGCCGCATGAGTGGGTTAGGTGAGCGCAGCGGGGCTCACCTAACCGCATTTATTGCGATTAGGACAAGCGCGTCACGCCGCATGTAACGCAGTGCAGCGCGCTCGTTTATCCGGTCTGTGATCAGTCGCAGACCAGATCGTGGGTTAGGTGGCGACAGGCGGTCTGACACACGCCTCGCCCCGTCCTGTCAGGATGAGCGCATCCAAGCACTCGTCCCTAGCCGGAGCCGGCGTGTTACCTCCTGGAGATGGCACGTTGGTCCCGGTCAGACATATGCTAGGCTTCAT
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| CDS seq | ATGAAGCCTAGCATATGTCTGACCGGGACCAACGTGCCATCTCCAGGAGTTAATGCCTTGAACCTTCAAGTGCTAGAGGTCCGTGATAACACATTCACTGGTGTTGTTCCTTCTTTCTGGGCTTTGCAAAACTTGACCCAGTTGGACCTTGGTGCCAACCTATTTGAATCTGTAGACTGGACATCCTTGTCCTCAAAAATAAACTCTACCAAACTGGTGGCAATATATTTGGATAACAACAGGATTCATGGAATCTTACCTAGTTCCATTGGCAATCTCCCAGGAAGCTTGCAAACGTTATATATGACCAACAACAGAATTGCAGGGACCATACCTTCAGAGATAGGAAACCTCAATAACCTCACTGTTCTTCATCTAGCAGAAAACTTAATCTCAGGGGACATTCCTGAAACACTTTGTAACCTTGTAAACTTGTTTGTCCTAGGGTTACATCGCAATAATCTTTCTGGGGAAATCCCACAATCAATTGGAAAACTTGAAAAATTAGGTGAGCTTTATCTCCAAGAGAACAACTTTAGTGGGGCCATACCTTCAAGCATAGGAAGGTGCAAAAATTTGGTAATGCTGAACCTCTCATGTAATACCTTCAATGGAATCATTCCACCCGAGCTCTTGTCGATCTCCTCACTTTCAAAAGGCCTAGATTTGTCTTACAATGGATTTAGTGGACCCATCCCATCTAAGATTGGTAGTTTAATTAACCTTGACTCTATTAACATTTCCAACAACCAATTATCTGGAGAGATTCCGCATACACTTGGTGAGTGCCTTCACTTGGAGTCCCTACAATTAGAAGTGAATTTTCTAAATGGGAGTATCCCGGACTCCTTCACGAGTTTAAGAGGCATCAATGAGATGGATCTCTCACAGAATAACTTGTCTGGTGAAATCCCAAAATTTTTTGAGACATTCAGCTCTTTGCAGCTCCTCAACTTATCCTTCAACAATCTCGAGGGAATGGTTCCTACATATGGTGTATTTAGCAATTCAAGTAAGGTGTTCGTACAAGGGAATAGGGAATTATGCACAGGGTCTTCAATGCTGCAATTACCACTTTGCACATCAACATCATCCAAAACAAACAAGAAATCCTATATCATCCCAATAGTTGTCCCACTTGCTAGTGCTGCTACATTCCTAATGATATGTGTTGCCACATTTCTTTACAAGAAGCGAAATAACCTGGGAAAGCAAATTGATCAGTCTTGTAAGGAGTGGAAGTTCACATATGCTGAGATTGCCAAAGCTACCAATGAATTTTCATCAGACAACTTGGTTGGTTCCGGGGCATTTGGGGTGGTCTACATAGGTAGATTCAAAATTGATGCAGAGCCAGTTGCCATTAAGGTATTCAAACTTGACGAAATCGGAGCATCAAATAACTTCTTGGCTGAATGCGAGGTGCTAAGGAACACTCGGCACCGAAATCTCATGCATGTGATTAGTCTATGTTCCTCCTTCGATCCAATGGGAAAAGAGTTTAAAGCTCTAATTTTGGAGTACATGGCTAATGGTAACCTAGAAAGTTGGCTTCATCCAAAAGTACAAAAACATCGACAAAGAAGACCATTAGGTCTAGGATCAATTATACAGATAGCAACGGACATTGCTGCTGCCTTGGATTATCTCCATAACTGGTGCACACCTCCGCTTGTTCACTGTGATTTGAAGCCAAGTAATGTACTTTTGGATGAGGACATGGTTGCTCATGTTAGTGACTTTATCTGTAACCATTCTTCAGCAGGGCTTAACAGTTTATCAAGCATAGCAGGACCAAGAGGGTCAGTTGGATATATTGCACCAGAATATGGGATGGGTTGCCAAATATCAACTGCAGGCGATGTCTATAGCTATGGAGTTATTCTGCTAGAAATGCTCACAGGAAAGCATCCAACTGATGACATGTTCAAGGATGGGCTAAACATTCACAAATTAGTGGACTGTGCATATCCACATAATGTTGTTGAGATTTTAGAGGCCAGTATCATTCCACGGTATACACATGAAGGAAGGAACCATGATTTAGATAATGACGTTGATGAAATGAGCATAATGGAGAGATGTATCACACAGATGCTGAAAATTGGTCTACAATGCTCTCTGGAGTCACCTGGAGATCGTCCATTAATCCAAGATGTTTATGCTGAAATCACCAAAATCAAAGAAACATTTTCAGCATTGGACAGTTGA
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| Protein seq | MKPSICLTGTNVPSPGVNALNLQVLEVRDNTFTGVVPSFWALQNLTQLDLGANLFESVDWTSLSSKINSTKLVAIYLDNNRIHGILPSSIGNLPGSLQTLYMTNNRIAGTIPSEIGNLNNLTVLHLAENLISGDIPETLCNLVNLFVLGLHRNNLSGEIPQSIGKLEKLGELYLQENNFSGAIPSSIGRCKNLVMLNLSCNTFNGIIPPELLSISSLSKGLDLSYNGFSGPIPSKIGSLINLDSINISNNQLSGEIPHTLGECLHLESLQLEVNFLNGSIPDSFTSLRGINEMDLSQNNLSGEIPKFFETFSSLQLLNLSFNNLEGMVPTYGVFSNSSKVFVQGNRELCTGSSMLQLPLCTSTSSKTNKKSYIIPIVVPLASAATFLMICVATFLYKKRNNLGKQIDQSCKEWKFTYAEIAKATNEFSSDNLVGSGAFGVVYIGRFKIDAEPVAIKVFKLDEIGASNNFLAECEVLRNTRHRNLMHVISLCSSFDPMGKEFKALILEYMANGNLESWLHPKVQKHRQRRPLGLGSIIQIATDIAAALDYLHNWCTPPLVHCDLKPSNVLLDEDMVAHVSDFICNHSSAGLNSLSSIAGPRGSVGYIAPEYGMGCQISTAGDVYSYGVILLEMLTGKHPTDDMFKDGLNIHKLVDCAYPHNVVEILEASIIPRYTHEGRNHDLDNDVDEMSIMERCITQMLKIGLQCSLESPGDRPLIQDVYAEITKIKETFSALDS |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g40810 | LOC_Os11g40810.1 | Chr11 | 24421633 | 24424532 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAGCCTAGCATATGTCTGACCGGGACCAACGTGCCATCTCCAGGAGTTAATGCCTTGAACCTTCAAGTGCTAGAGGTCCGTGATAACACATTCACTGGTGTTGTTCCTTCTTTCTGGGCTTTGCAAAACTTGACCCAGTTGGACCTTGGTGCCAACCTATTTGAATCTGTAGACTGGACATCCTTGTCCTCAAAAATAAACTCTACCAAACTGGTGGCAATATATTTGGATAACAACAGGATTCATGGAATCTTACCTAGTTCCATTGGCAATCTCCCAGGAAGCTTGCAAACGTTATATATGACCAACAACAGAATTGCAGGGACCATACCTTCAGAGATAGGAAACCTCAATAACCTCACTGTTCTTCATCTAGCAGAAAACTTAATCTCAGGGGACATTCCTGAAACACTTTGTAACCTTGTAAACTTGTTTGTCCTAGGGTTACATCGCAATAATCTTTCTGGGGAAATCCCACAATCAATTGGAAAACTTGAAAAATTAGGTGAGCTTTATCTCCAAGAGAACAACTTTAGTGGGGCCATACCTTCAAGCATAGGAAGGTGCAAAAATTTGGTAATGCTGAACCTCTCATGTAATACCTTCAATGGAATCATTCCACCCGAGCTCTTGTCGATCTCCTCACTTTCAAAAGGCCTAGATTTGTCTTACAATGGATTTAGTGGACCCATCCCATCTAAGATTGGTAGTTTAATTAACCTTGACTCTATTAACATTTCCAACAACCAATTATCTGGAGAGATTCCGCATACACTTGGTGAGTGCCTTCACTTGGAGTCCCTACAATTAGAAGTGAATTTTCTAAATGGGAGTATCCCGGACTCCTTCACGAGTTTAAGAGGCATCAATGAGATGGATCTCTCACAGAATAACTTGTCTGGTGAAATCCCAAAATTTTTTGAGACATTCAGCTCTTTGCAGCTCCTCAACTTATCCTTCAACAATCTCGAGGGAATGGTTCCTACATATGGTGTATTTAGCAATTCAAGTAAGGTGTTCGTACAAGGGAATAGGGAATTATGCACAGGGTCTTCAATGCTGCAATTACCACTTTGCACATCAACATCATCCAAAACAAACAAGAAATCCTATATCATCCCAATAGTTGTCCCACTTGCTAGTGCTGCTACATTCCTAATGATATGTGTTGCCACATTTCTTTACAAGAAGCGAAATAACCTGGGAAAGCAAATTGATCAGTCTTGTAAGGAGTGGAAGTTCACATATGCTGAGATTGCCAAAGCTACCAATGAATTTTCATCAGACAACTTGGTTGGTTCCGGGGCATTTGGGGTGGTCTACATAGGTAGATTCAAAATTGATGCAGAGCCAGTTGCCATTAAGGTATTCAAACTTGACGAAATCGGAGCATCAAATAACTTCTTGGCTGAATGCGAGGTGCTAAGGAACACTCGGCACCGAAATCTCATGCATGTGATTAGTCTATGTTCCTCCTTCGATCCAATGGGAAAAGAGTTTAAAGCTCTAATTTTGGAGTACATGGCTAATGGTAACCTAGAAAGTTGGCTTCATCCAAAAGTACAAAAACATCGACAAAGAAGACCATTAGGTCTAGGATCAATTATACAGATAGCAACGGACATTGCTGCTGCCTTGGATTATCTCCATAACTGGTGCACACCTCCGCTTGTTCACTGTGATTTGAAGCCAAGTAATGTACTTTTGGATGAGGACATGGTTGCTCATGTTAGTGACTTTATCTGTAACCATTCTTCAGCAGGGCTTAACAGTTTATCAAGCATAGCAGGACCAAGAGGGTCAGTTGGATATATTGCACCAGAATATGGGATGGGTTGCCAAATATCAACTGCAGGCGATGTCTATAGCTATGGAGTTATTCTGCTAGAAATGCTCACAGGAAAGCATCCAACTGATGACATGTTCAAGGATGGGCTAAACATTCACAAATTAGTGGACTGTGCATATCCACATAATGTTGTTGAGATTTTAGAGGCCAGTATCATTCCACGGTATACACATGAAGGAAGGAACCATGATTTAGATAATGACGTTGATGAAATGAGCATAATGGAGAGATGTATCACACAGATGCTGAAAATTGGTCTACAATGCTCTCTGGAGTCACCTGGAGATCGTCCATTAATCCAAGATGTTTATGCTGAAATCACCAAAATCAAAGAAACATTTTCAGCATTGGACAGTTGA
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| Protein seq | MKPSICLTGTNVPSPGVNALNLQVLEVRDNTFTGVVPSFWALQNLTQLDLGANLFESVDWTSLSSKINSTKLVAIYLDNNRIHGILPSSIGNLPGSLQTLYMTNNRIAGTIPSEIGNLNNLTVLHLAENLISGDIPETLCNLVNLFVLGLHRNNLSGEIPQSIGKLEKLGELYLQENNFSGAIPSSIGRCKNLVMLNLSCNTFNGIIPPELLSISSLSKGLDLSYNGFSGPIPSKIGSLINLDSINISNNQLSGEIPHTLGECLHLESLQLEVNFLNGSIPDSFTSLRGINEMDLSQNNLSGEIPKFFETFSSLQLLNLSFNNLEGMVPTYGVFSNSSKVFVQGNRELCTGSSMLQLPLCTSTSSKTNKKSYIIPIVVPLASAATFLMICVATFLYKKRNNLGKQIDQSCKEWKFTYAEIAKATNEFSSDNLVGSGAFGVVYIGRFKIDAEPVAIKVFKLDEIGASNNFLAECEVLRNTRHRNLMHVISLCSSFDPMGKEFKALILEYMANGNLESWLHPKVQKHRQRRPLGLGSIIQIATDIAAALDYLHNWCTPPLVHCDLKPSNVLLDEDMVAHVSDFICNHSSAGLNSLSSIAGPRGSVGYIAPEYGMGCQISTAGDVYSYGVILLEMLTGKHPTDDMFKDGLNIHKLVDCAYPHNVVEILEASIIPRYTHEGRNHDLDNDVDEMSIMERCITQMLKIGLQCSLESPGDRPLIQDVYAEITKIKETFSALDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.298693 | 0.195506 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0628000 | SBH | 0.072616 | 0.552695 | 0.699903 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g24630 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0628000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020820 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020840 | SBH | 0.000000 | 1.182089 | 0.537312 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020650 | SBH | 0.000000 | 0.000000 | 0.189930 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020180 | SBH | 0.070491 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020710 | SBH | 0.000000 | 1.998485 | 1.195034 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0366300 | RBH | 0.229073 | 2.623287 | 0.4163425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021190 | SBH | 0.000000 | 0.000000 | 0.069075 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0385600 | RBH | 0.8535745 | 2.3089455 | 0.7634285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020980 | SBH | 0.000000 | 0.064609 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021140 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020840 | SBH | 0.0 | 1.802488 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020430 | SBH | 0.053605 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020560 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020500 | RBH | 0.044975 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020910 | RBH | 0.0 | 3.386914 | 0.0 |
