Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g37800 | OGI:11067360 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:22385204-22389776 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGATGTGCCTATGTGTCTATGGAGAAACAAGAGTGCCAGTGGGGATTGGGAATTTTAGGTCATTACAAGAGCTAGACCTGGGCATGGGAACCATTGAAAGTTACGAAAACTTTGGCATGGACTTTGGCATGGAGGTGGGCAAGCTGACGGAGCTGAGGATGCTCAATATTAAGGGGATCGACGAGGGCAAGTGGAAGGCTCTAATACAGTCTGTGTTCATGTTGCCGAGAATTCAAAAGCTGGAGATTAGTTTCTTCTCACTCGGGAAGATGATCACCTGGGATGGTTGGGACCACTGGGAACCCTCGCGGCAGCTCCAGCAGTTATCTATAAATGGGATCTGCCTTCCTCGGCTACCAGTGTGGATGAACTCCATATGCATCCCTCATCTGTCTTGCATGGACCTTAAAGTGTCAACTATTGAAGCATCAGACCTAGATGTGATTGCGAGGTTGCCGGCTCTTTGCGAGGTTGTCCTGCAATTTATTTGGACCGATATAGAAAGGTATGCCTAGTTAATTAATAATGATTTACCAATTGATTAGTCTCATTCTCGGGAGCGTACTGCATTCCTCAATTCATTGGTCCTTAATTTTACTGTACCCCTACTTGAGGTGGTAGTAGTGTAGTAGCAACTAATCTAATCTTCCGTAGCTATGGGTAATTTAGATTTTTAGTTCACTAGCAAACATGTCCGTGCGTTGCAACGGGTGAAAAAACCAATGATAATATATGTTTTTCATGCAATAACCACATGTCGATGACAATCAGAAAATCAAAAAATTTGAACATCTTAAATGTAATGGCCTAACCTTGATAATAGCAACCTTACCAATGTTTGCTTTACTTAAAATAATTGGATTATTCATATGACAACATGCATATAATCTAAAATATTATTTTAATCTCATTCTTGCAACCAATCAAATCCTACACTACCTCGCATGGTCAAGTCTACATAAAATAGAGTCACTGTGCACTATTCTCTAAACAACAATTAAAATATGTTTGATTTCTAATATTATTTTCATATAATGTGTTATCAAGAATAGTAGTTATACTTCACAAAAATAGTTTGATAATTGCCTACATAGATGCGCGGGGTCTTCAATATAGGAGAATAAATGACGAAACAAAAGCAGTGTAGGAGATGGAGAAAAATCGATGGATCATATCCAACCAAGCGTCCATCAATTTAGCGTTTTTTTTTACAGTTTTTTCCTCATATGCTTTTTTTTTGCTTATTTTACAGACAATAGAAATATTTTTTCTCACGTGTTTTTTTGGACTATAGAAACCTTTTTTTTCTAGCGCGTTTTATTTTGTGCTTTTTTTCTGTCATTTCATTTTTTTAAAACCGTTTTTATTTTCTCGTGCATTTTTCTTTTTTAATATACGATGGAAACTTCTCTTTTTAAATATTTAGATTAGATTAGAGATAGAGAAGAGATATATACGGAATACTAAAACTATGAATAGAAATTAGACATTTTTTGCCGCGCTTTTTTTTCTGCCCTTTTTATTTTTTTCTTGTGTGTTTTTTACAAACGGTGTTTTTCGCCACTTTCTTATAGAGTCGGACCTTTCTATCTTTTTTTTGGTTTTTTTTTAATTTTTACGGATTTTTTTTTGTTTTTCACTATGTATGAATCGGACTTTTTTTTTCGTTGTGGGAATCGGATCTACGTTTCTTTTCTTTCCAGGAAACGAACTTTTTTTCCCGTTTTAGTTGGGAATCGGATATATTTTTAAAATCTACGTTTCTTTTTTTGTTTTTTCGCCAGGTATTGTATTTTTTTTCCATTTTAGGTGGGATCGGATCTATTTTTTTGCTAGTGAATCGTATTTTTTAGGTTGTTTTGCGCTGTTTTTTTTATGTTGACGGACGACGGAAGCATGTTAAAATTTTTAAGTATTACTAGATAGATAGATACTAGATAGATAGATAGATTAATTAATTAATATGGAAGGGCAAATTAGTCCCTTCTCTCGCTCCCTCTTGGCTCTCGCATCTACTCCAATTGCCAACCTGACTTGCTGGCCTCCACCATCCCCCGTGTCCCATGACCTAGTCCTAGCGTTGCACTTGCTAACCAGCTAGCAAGGTTTATTACCCCTACGCCAACTACAAATCCATTATCATGCCATCTACTTTATTTTCAAGATTACCCCTCTACGAATTCTACGTCTACTACCAGACGTAGTAGGATTACATCTAATCTGTTGGATCGAAGGTACTTTTAAAGAAAATCTCATTTCGTGCCCCCTTTCAATTTCAATTCCAGGAGGATATGAAACAGGACAAAAATGATGATGGGGAGATTTCAGCATATACGAATCAAGAGGTGCTGAACCTGCACATACAACATATTCGATCCTGGTTGTGTAATTAATTACCTGATCTTAATTACTGACTACTGGTTTATGTCTGTTTCAGCTGGACAATGATGTTACGCACCAATCTTAATTACCGGCCCTATGCACTCTTTCGTTCATTCGTGCTGGTAGCCAGGTACATGCACCAAATTAAGTAGCACAGCAACATCTTCACAACATTCTTCAACTTAGGTCATAGCTAAAAATTAAGGAGCACATGACAGGGGCATGACAACTCTTTTCCTGCTGTAACTAAGGAGCACAGGACAGGAGCAGCTCGATGCCATCTGGACTCCACCTCTTTATCTCAAGGATTTATATGATATAGGGTGGTTTGTAAATTGTAAATGGCGGCCTCGGCTACAATAATTAAGCCACAATTATGCTCTGACAGAAACATTGAGTCTAAACTGTCACATCTGATATTTGCCCCATGCTTGTTTTCCAAAACCACCTACTAAAATGATTAAGGGTTGGTTGAAACACGAAAGCATTTTGTTTGAACATATGACGGGGGTTCGATTTGTCAGTAGGTTTAGGCTGTGTTCGGCAGGGACCCTCCAAACACGCAAAACAAGTGGTTCATCACTTAGTACGTGATTAATTAAGTAGTAGCTAAATTTTTTTTAAAAAAAATAAATTAATAAGATTTTTTTAAAGCAACTCTTGTATATATTTTTTTAGCATAAAAATGCACCGTTTAGCAGTTTGAGAAGCATGCGTTTGAAAAACGAATGGAGCATGATTAAACGGATGTTCAAAAGTTAACGATGTCATATATATATCTATTATATATTAAAAATCAATTAAACTTCCTATGAATACTCCTGAACCACCACATGTCTTCCTACAAACACTCCTGATTTGACACTTGACACTTTCAAATAAGTTGGACCCACCAATTTCTTTTATTCAACAAAGGACCCACTATTTTTCTTCATTACATTTATTTTAATAGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAAGGCCCATGGGGCCTGTACATGTACGTGTGCTGCACAACTGCACATACGTACGCCCATAACCGGCCGGTGCATCTCCTCTTTTCTATTTTCTCTATTTTCATGCCCTATTAGATTGAAACATATTTTGTGGTAATTTTTTTTTTGAACAACTATAACATCTACATCATATATATAGCTAATTTTTTTTATCCATGCATATACTATTAGATCATTTATAACAAAATTTATAATTCAAGTCCCAAATTAACTGTATCTAACAAGTGAAACAAATACATTGCTTTTTTTTGGATCAGCTATTGGCCACTCAACACACATTTTTTTATGGAAAAACACATAGATTTTTAAACCATGTGATTAACAACACGTAGTTTACACTAGACAATATAAAACACATAAAACTAATTAATGAGATTAAAATAATGAGAAGTTAACTAGAAAATACATATTCCCCTGCCCCAAAATATGAGAAATTTTCGTTAGATGGACACGGATTTAGATTAGTAGTACTATGATATACCATTCAACCAAAATCTTATATTTTGTGCTACTACAAATATGTCATTTTAGAAAAATGCCGCTACTATTCACGATATCAGTTACGTGCCACTTAAATTTGAGAAAATTGGAACCATGCCACTCCATCACGTTTTCCGTCAGACCCCTAGACATGGGACCCACACGTCAGTTCCATCTCCCTCATCTTTCTTCCCCATCTCTTCCTCCATCCGTGCGACTGCTATGAGGACAACAGCGACGACGGCGGCGGTTCCCGAGCACTCCCGTTGCGGATGGCATCAAGGATGGCCGCAGCGGCGGCACCCGAGACCTCCATCACGGATGTGATCGAGGACAGCGACGGCGGCGGCTGCTCCCGAGCCCTCCCACGCAGATGGCGTTGAGGATAGCGGCGGCGGCGGCTGCAAGTTCCAAGCCCTCCTGTCGCGGATGGGGTCGAGGATAGTGATGGCGACGGTGGCTCCCGAGCCCTCCCTCATGGATGGCGTTGAGGACGGCTGCTGTCGAGCGTCTTGCCACAGACGGCTGCGGCGGCGATGGCTCCCAAGCCTCCCGCCGCGGATAGGGCCTACGATAGCGGCGACGACAATGGCTCCTGAGGCCTTCGCGGAGGTGGTCGATGATGGCGGCAGCGACGGTGGTGGTTGA
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| CDS seq | ATGATGTGCCTATGTGTCTATGGAGAAACAAGAGTGCCAGTGGGGATTGGGAATTTTAGGTCATTACAAGAGCTAGACCTGGGCATGGGAACCATTGAAAGTTACGAAAACTTTGGCATGGACTTTGGCATGGAGGTGGGCAAGCTGACGGAGCTGAGGATGCTCAATATTAAGGGGATCGACGAGGGCAAGTGGAAGGCTCTAATACAGTCTGTGTTCATGTTGCCGAGAATTCAAAAGCTGGAGATTAGTTTCTTCTCACTCGGGAAGATGATCACCTGGGATGGTTGGGACCACTGGGAACCCTCGCGGCAGCTCCAGCAGTTATCTATAAATGGGATCTGCCTTCCTCGGCTACCAGTGTGGATGAACTCCATATGCATCCCTCATCTGTCTTGCATGGACCTTAAAGTGTCAACTATTGAAGCATCAGACCTAGATGTGATTGCGAGGTTGCCGGCTCTTTGCGAGGTTGTCCTGCAATTTATTTGGACCGATATAGAAAGCTGGACAATGATGTTACGCACCAATCTTAATTACCGGCCCTATGCACTCTTTCGTTCATTCGTGCTGGTAGCCAGGACAGCGACGGCGGCGGCTGCTCCCGAGCCCTCCCACGCAGATGGCGTTGAGGATAGCGGCGGCGGCGGCTGCAAGTTCCAAGCCCTCCTGTCGCGGATGGGGTCGAGGATAGTGATGGCGACGGTGGCTCCCGAGCCCTCCCTCATGGATGGCGTTGAGGACGGCTGCTGTCGAGCGTCTTGCCACAGACGGCTGCGGCGGCGATGGCTCCCAAGCCTCCCGCCGCGGATAGGGCCTACGATAGCGGCGACGACAATGGCTCCTGAGGCCTTCGCGGAGGTGGTCGATGATGGCGGCAGCGACGGTGGTGGTTGA
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| Protein seq | MMCLCVYGETRVPVGIGNFRSLQELDLGMGTIESYENFGMDFGMEVGKLTELRMLNIKGIDEGKWKALIQSVFMLPRIQKLEISFFSLGKMITWDGWDHWEPSRQLQQLSINGICLPRLPVWMNSICIPHLSCMDLKVSTIEASDLDVIARLPALCEVVLQFIWTDIESWTMMLRTNLNYRPYALFRSFVLVARTATAAAAPEPSHADGVEDSGGGGCKFQALLSRMGSRIVMATVAPEPSLMDGVEDGCCRASCHRRLRRRWLPSLPPRIGPTIAATTMAPEAFAEVVDDGGSDGGG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g37800 | LOC_Os11g37800.1 | Chr11 | 22385204 | 22389776 | + | MSU_osa1r7 | ||
| CDS seq | ATGATGTGCCTATGTGTCTATGGAGAAACAAGAGTGCCAGTGGGGATTGGGAATTTTAGGTCATTACAAGAGCTAGACCTGGGCATGGGAACCATTGAAAGTTACGAAAACTTTGGCATGGACTTTGGCATGGAGGTGGGCAAGCTGACGGAGCTGAGGATGCTCAATATTAAGGGGATCGACGAGGGCAAGTGGAAGGCTCTAATACAGTCTGTGTTCATGTTGCCGAGAATTCAAAAGCTGGAGATTAGTTTCTTCTCACTCGGGAAGATGATCACCTGGGATGGTTGGGACCACTGGGAACCCTCGCGGCAGCTCCAGCAGTTATCTATAAATGGGATCTGCCTTCCTCGGCTACCAGTGTGGATGAACTCCATATGCATCCCTCATCTGTCTTGCATGGACCTTAAAGTGTCAACTATTGAAGCATCAGACCTAGATGTGATTGCGAGGTTGCCGGCTCTTTGCGAGGTTGTCCTGCAATTTATTTGGACCGATATAGAAAGCTGGACAATGATGTTACGCACCAATCTTAATTACCGGCCCTATGCACTCTTTCGTTCATTCGTGCTGGTAGCCAGGACAGCGACGGCGGCGGCTGCTCCCGAGCCCTCCCACGCAGATGGCGTTGAGGATAGCGGCGGCGGCGGCTGCAAGTTCCAAGCCCTCCTGTCGCGGATGGGGTCGAGGATAGTGATGGCGACGGTGGCTCCCGAGCCCTCCCTCATGGATGGCGTTGAGGACGGCTGCTGTCGAGCGTCTTGCCACAGACGGCTGCGGCGGCGATGGCTCCCAAGCCTCCCGCCGCGGATAGGGCCTACGATAGCGGCGACGACAATGGCTCCTGAGGCCTTCGCGGAGGTGGTCGATGATGGCGGCAGCGACGGTGGTGGTTGA
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| Protein seq | MMCLCVYGETRVPVGIGNFRSLQELDLGMGTIESYENFGMDFGMEVGKLTELRMLNIKGIDEGKWKALIQSVFMLPRIQKLEISFFSLGKMITWDGWDHWEPSRQLQQLSINGICLPRLPVWMNSICIPHLSCMDLKVSTIEASDLDVIARLPALCEVVLQFIWTDIESWTMMLRTNLNYRPYALFRSFVLVARTATAAAAPEPSHADGVEDSGGGGCKFQALLSRMGSRIVMATVAPEPSLMDGVEDGCCRASCHRRLRRRWLPSLPPRIGPTIAATTMAPEAFAEVVDDGGSDGGG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0588400 | SBH | 0.531363 | 0.225563 | 1.781642 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0588400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018800 | SBH | 0.0 | 2.681500 | 1.106877 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018910 | SBH | 0.044283 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018680 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018720 | SBH | 0.0 | 5.561223 | 0.386187 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0344100 | SBH | 1.6615 | 10.40998 | 4.9731405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019260 | SBH | 0.0 | 0.162393 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0356900 | SBH | 0.153927 | 10.384049 | 0.008159 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019080 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019190 | SBH | 0.130008 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018740 | SBH | 0.0 | 4.139428 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018430 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018590 | SBH | 0.0 | 2.022782 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018750 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019000 | SBH | 0.085491 | 1.135887 | 0.549001 |
