Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g35800 | OGI:11062090 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:21011141-21015508 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCTGCGCCTGGAGCCGGAGCTGCCGCCGGCGCCGCTGCTGCCTCTGGAGATGGCGCGCCGGGAGCCGGAGCCGTTCGAGCCGGAGCTGCCGCTGGCGCCGTTGCTGCCTCTGGAGATGGCACGCCGGGAGCCGGAGGCGTTGCGAACGTCAACTCCAACGGAGGCAATTCTGCCTCACAATCCAGCGGAGGGCCATTCTCGGGGTATGTCCTTCTCCTGTTATTAATTCATTTGTTCATACCGCTGTTAGTCATGCTAGTCGCAAGTCAATTGCGTCCTTGGTATGGGTATGTGCATGATGCTCATGATACCTTAAGCATGTTACTGGTTATGCTATATGTTGTCACTAGATCACCCCACATTGTTCATGCCATGATTATGATTATTGTCTTAATATTTTGGATTAAAATATGCTGATATATGACCATATTTCCAACAATCCAAAAACCTGATAGGTCATTTTCGGTAGTGGCTTTGCTGCTGCACTGAAACCACATGCTTTTGATGGTTCTAACTATAAGAGGTGGAAAGCACGTGCACTATTGTGGTTGACAGCGATGCAATGCTTCTATGTTTCACGGGGCAAACGAAGTGAACCACCTCTTTCTCCTGAGGAAGAGGCTAAATTCAAGGCTTCGGATTGCCTGTTCCGTGGAGCATTGATCAGTGTACTCGCTGACAATATAGTGGACGTGTACATGCACATGCCTTTCGGGAAGGACATGTGGGATGCACTTGAGGCCAAGTTCGGAGTTTCCGACGCCGGCAGTGAGCTGTATGTCATGGAGCAGTTTTATGACTACAAGATGGTCGATGACCGTTCTGTAGTAGAACAAGCTCATGAGATTCAGATGCTGACTAAGGAACTTGAGAACAACAACTGTGAGTTGCCGGACAAGTTTGTGGCGGGTGGCATTATTGCCAAATTGCCACCTTCTTGGTCGGACTTTGCCACTTCTCTAAAGCACAAGAGGCAAGAGTTCAGTGTTTCTGATCTCATTGGCTCTTTGGGTGTTGAGGAGAAGGCGAGGGCAAAGGACAACTGGGGCAAAAAGGTTGAGGGAGGTTCTAGTGCCAATATGGTACAGAAGAAGAACCGTCATGCATCCCACAACAACAACAAGAAAGTCAAGCCTGATGTCAAACCCAAGGTTGCAACCAACTTTAAGAAGAAAGGCAAGGGAAAGGCAAAGGGCGACTGCTTTGTGTGTGGCAAGTCTGGGCATTGGGCCAAGGACTGTCCTGAGCGCAAAGACAGGAAGTGTGCCAACATGGTCATTAGCGAGGGCGGAGGAACATCGGGGTACGGTAAAATATTACCTATAGTTCTCTTTGTTTTTCACTCACCTGATTGGTGGGTGGATACTGGTGCTAATATTCATGTGTGTGCTGACATTTCTCTGTTTTCTTCTTATCAGGTCAGGAGAGGTTCCTCCTTGTTGATGGGAAACGGGTCGCTTACGGCTGTTTATGGTGTTGGTACGGTCGATCTGAAGTTTACTTCGGGAAAGACCGTGCAGCTGAAGAACGTGCAACATGTCCCTTCAATAAAGAAGAATCTTGTTAGCGGCTCTCTATTGTGTAGAGAAGGTTTTAGACTTGTGTTTGAATCCAATAAATGTGTCGTATCTAAATATGGAACTTTTGTTGGAAAAGGTTATGACAGCGGATGCTTGTTCCGCTTTTCTTTGAATGACATGTGTAATAATTATAATGTTGTGAACCATATTAGCGAGAATGATGAGTCTAATGTATGGCATTCGCGATTGTCATGTGAATTTCGGTTGTATGACGCGCTTAGCTAACATGAGTTTAATTCCAAAATTCACTTTGGTCAAAGGTTCTAAGTGCCATACTTGTGTTTAATCGAAACAACCTCGCAAGCCTCACAAGGCATCTGAGGCGAGGAATTTGGCACCTCTAGAACTTGTTCATTCCGATTTGTGCGAAATAAACGGCGTGTTGACTAAAGGGGGAAAGAAATATTTCATGACACTAATAGATGATTGCACTATATTTTGTTATGTGTATCTATTGAAAACAAAGGACGAAGCATTGCATTTCTTTAAGACCTATAAAGCTGAGGTAGAAAACCAACTTGAAAGGAAAATCAAACGGTTGACGTCTGATAGAGGTGGGGAGTATTTTTCTAATGAGTTTGCATCCTTTTGCGAAGAGTTTGGAATTATTCATGAGAGGACGCCTCCCTATTCACCCCAATCAAATGGGGTGGCCGAAAGAAAGAACCGTACTCTAACTGAGATGGTGAATGCCATGTTAGACACTGCGGGGCTTTCCAAGGAATGGTGGAGTGATGCAGTTTTGATTACGTGTCATGTCCTGAATAAAATTCCAATGAAGCATAAGGAAGTAACACCATTCGAGGAATGGGAAAGGAAGAAATTAAATCTCTCATACCTACGAACATGGGGCTGTTTGGCCAAGGTAAATGTACCTATAGCCAAAAAGCAGAAACTTAGACCAAATACTGTTGATTGTGTGTTCCTTGGTTATGCTATTCACAGTGTAGGTTATAGATTCTTAATAGTAAACTCTAGAGTACCCGACATACATGTTGGTACAATTATTGAGTCCAGAGATGCTACATTCTTTGAGAATGAATTTTCCATGAAACATACACCTAGCACTTCTAGTCAAGAAACTGTCATGCCCCATAAGCACTTTGCACCGATAGAACACAATGATCAAACGCCTGAGGAAAATCCTGAGGAGGACAACATTGTAGATACTCGTAAGAGTAAGAGACAAAGGGTTGCAAAATCCTTTGGAGATGACTACATTGTATACCTCGTGGATGACACCCCAAGAACCATAGAAGAGGCATATTCATCTCCTGACGCTGACTACTGGAAGGAAGCAGTACGCAGTGAGATGGACTCGATTATGTCTAATGATACTTGGGAAGTCGTTGAGCGTCCATATGGGTGCAAGCCTATAGGATGCAAATGGGTTTTCAAGAAAAAGCTTAGCCCTGATGGTACAATCGAAAAGTACAAGGCAAGACTTGTGGCCAAGGGTTATACCCAAAAGGAAGGCAAGGATTTTTTCGACACATACTCACCAGTTGCTCACTTGACAATGATTCGAGTACTACTTGCTCTGGCAGCCTCTCATGGTGTTCTCGTCCATCAGATGAACGTTAAGACAGCTTTCCTAAACGGAGAGCTGGAGGAGGAGATCTATATGGATCAACCAGACGGGTATGTACTAGAAGGTCAGGAGGGAATAGTGTGTAAACTGTTGAAATCCTTGTATGGCCTTAAGCAAGCACCTAAGCAATGACATGAGAAGTTTGACACCACGCTTACATCTGCAGGCTTTGTTGTGAACGGAGCTGACAAATGTGTGTACTATCGCTATGGTGGGGGAGAAGGAGTGATCTTGTGCTTATATGTCGATGACATATTGATCTTTGGGACCAACCTCAATGTGATTGAGGGGGTCAAGGACTATCTGTCCAAGAGTTTTGAAATGAAGGATTTGGGAGAGGCTGATGTTATTCTTAACATTAAACTACAAAGAGGAGATGAGGGTGAGATTACACTTGTGCAATCCCACTATGTGGACAAGATTTTGAGTCACTTTGGATATAGTGGCTGCAAGCCAGCTTCTACTCCTTATGATCCCAGCGTGCTATTAAGGAAAAACCGAAGAATAGCAAGGGATCAACTGAGATACTCCCAAATAATTGGTTCATTGATGTACTTGGCTAGTGCAACGAGGCCTGACATCTCATTTGCTGTAAGCAAGCTGAGCCGGTTTGTCTTAAATCCGGGAGATGATCATTGGCAGGCTCTGGAAAGAGTAATGCGCTATCTAAAGGGCATTATGAGTTATGGAATTCACTATACCAGGTATCCAAAAGTACTAGAAGGGTATAGTGACTCAAACTGGATATCTGATGCTGATAAGATAAAAGCCACAAGTGGATATGTGTTCGCACTTGGAGGTGGCACTGTTTCCTGGAAGCCTTGCAAGCAGACCATCTTAACGAGGTCAACAATGGAAGTAGAACTTACAGCACTAGATACTGCGACAGTTGAGGCCGAGTGGCTTCGTGAACTCCTGATGGATTTGCCGGTGGTTGGAAAACCAGTGCCAGCTATCCTAATGAACTGTGACAATCAAACAATGATTATTAAAGTGAACAGTTCAAAGGACAACATGAAGTCATCTAGGCATATCAAGAGAAGACTGAAATCTGTCAGAAAGCAGAAAAACTCCGGAGTGATAGCATTGGACTATGTCCAAACGGCTAGAAATCTGGCAGATCAGTTTACCAAGGGGCTACCACGTAATGTGATAGACAGTGCATCGATGGAAATGGGCTTGATACCCACCTAA
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| CDS seq | ATGTCTGCGCCTGGAGCCGGAGCTGCCGCCGGCGCCGCTGCTGCCTCTGGAGATGGCGCGCCGGGAGCCGGAGCCGTTCGAGCCGGAGCTGCCGCTGGCGCCGTTGCTGCCTCTGGAGATGGCACGCCGGGAGCCGGAGGCGTTGCGAACGTCAACTCCAACGGAGGCAATTCTGCCTCACAATCCAGCGGAGGGCCATTCTCGGGTCATGCTAGTCGCAAGTCAATTGCGTCCTTGGTATGGGTCATTTTCGGTAGTGGCTTTGCTGCTGCACTGAAACCACATGCTTTTGATGGTTCTAACTATAAGAGGTGGAAAGCACGTGCACTATTGTGGTTGACAGCGATGCAATGCTTCTATGTTTCACGGGGCAAACGAAGTGAACCACCTCTTTCTCCTGAGGAAGAGGCTAAATTCAAGGCTTCGGATTGCCTGTTCCGTGGAGCATTGATCAGTGTACTCGCTGACAATATAGTGGACGTGTACATGCACATGCCTTTCGGGAAGGACATGTGGGATGCACTTGAGGCCAAGTTCGGAGTTTCCGACGCCGGCAGTGAGCTGTATGTCATGGAGCAGTTTTATGACTACAAGATGGTCGATGACCGTTCTGTAGTAGAACAAGCTCATGAGATTCAGATGCTGACTAAGGAACTTGAGAACAACAACTGTGAGTTGCCGGACAAGTTTGTGGCGGGTGGCATTATTGCCAAATTGCCACCTTCTTGGTCGGACTTTGCCACTTCTCTAAAGCACAAGAGGCAAGAGTTCAGTGTTTCTGATCTCATTGGCTCTTTGGGTGTTGAGGAGAAGGCGAGGGCAAAGGACAACTGGGGCAAAAAGGTTGAGGGAGGTTCTAGTGCCAATATGGTACAGAAGAAGAACCGTCATGCATCCCACAACAACAACAAGAAAGTCAAGCCTGATGTCAAACCCAAGGTTGCAACCAACTTTAAGAAGAAAGGCAAGGGAAAGGCAAAGGGCGACTGCTTTGTGTGTGGCAAGTCTGGGCATTGGGCCAAGGACTGTCCTGAGCGCAAAGACAGGAAGTGTGCCAACATGGTCATTAGCGAGGGCGGAGGAACATCGGGGTACGGTAAAATATTACCTATAGTTCTCTTTGTTTTTCACTCACCTGATTGGTGGGTGGATACTGGTGCTAATATTCATGTCAGGAGAGGTTCCTCCTTGTTGATGGGAAACGGGTCGCTTACGGCTGTTTATGGTGTTGGTACGGTCGATCTGAAGTTTACTTCGGGAAAGACCGTGCAGCTGAAGAACGTGCAACATGTCCCTTCAATAAAGAAGAATCTTGTTAGCGGCTCTCTATTGTGTAGAGAAGGTTTTAGACTTGTGTTTGAATCCAATAAATGTGTCGTATCTAAATATGGAACTTTTGTTGGAAAAGGTTATGACAGCGGATGCTTGTTCCGCTTTTCTTTGAATGACATGTGTAATAATTATAATGTTGTGAACCATATTAGCGAGAATGATGAGTCTAATGACGAAGCATTGCATTTCTTTAAGACCTATAAAGCTGAGGTAGAAAACCAACTTGAAAGGAAAATCAAACGGTTGACGTCTGATAGAGGTGGGGAGTATTTTTCTAATGAGTTTGCATCCTTTTGCGAAGAGTTTGGAATTATTCATGAGAGGACGCCTCCCTATTCACCCCAATCAAATGGGGTGGCCGAAAGAAAGAACCGTACTCTAACTGAGATGGTGAATGCCATGTTAGACACTGCGGGGCTTTCCAAGGAATGGTGGAGTGATGCAGTTTTGATTACGTGTCATGTCCTGAATAAAATTCCAATGAAGCATAAGGAAGTAACACCATTCGAGGAATGGGAAAGGAAGAAATTAAATCTCTCATACCTACGAACATGGGGCTGTTTGGCCAAGGTAAATGTACCTATAGCCAAAAAGCAGAAACTTAGACCAAATACTGTTGATTGTGTGTTCCTTGGTTATGCTATTCACAGTGTAGGTTATAGATTCTTAATAGTAAACTCTAGAGTACCCGACATACATGTTGGTACAATTATTGAGTCCAGAGATGCTACATTCTTTGAGAATGAATTTTCCATGAAACATACACCTAGCACTTCTAGTCAAGAAACTGTCATGCCCCATAAGCACTTTGCACCGATAGAACACAATGATCAAACGCCTGAGGAAAATCCTGAGGAGGACAACATTGTAGATACTCGTAAGAGTAAGAGACAAAGGGTTGCAAAATCCTTTGGAGATGACTACATTGTATACCTCGTGGATGACACCCCAAGAACCATAGAAGAGGCATATTCATCTCCTGACGCTGACTACTGGAAGGAAGCAGTACGCAGTGAGATGGACTCGATTATGTCTAATGATACTTGGGAAGTCGTTGAGCGTCCATATGGGTGCAAGCCTATAGGATGCAAATGGGTTTTCAAGAAAAAGCTTAGCCCTGATGGTACAATCGAAAAGTACAAGGCAAGACTTGTGGCCAAGGGTTATACCCAAAAGGAAGGCAAGGATTTTTTCGACACATACTCACCAGTTGCTCACTTGACAATGATTCGAGTACTACTTGCTCTGGCAGCCTCTCATGGTGTTCTCGTCCATCAGATGAACGTTAAGACAGCTTTCCTAAACGGAGAGCTGGAGGAGGAGATCTATATGGATCAACCAGACGGGTATGTACTAGAAGGCTTTGTTGTGAACGGAGCTGACAAATGTGTGTACTATCGCTATGGTGGGGGAGAAGGAGTGATCTTGTGCTTATATGTCGATGACATATTGATCTTTGGGACCAACCTCAATGTGATTGAGGGGGTCAAGGACTATCTGTCCAAGAGTTTTGAAATGAAGGATTTGGGAGAGGCTGATGTTATTCTTAACATTAAACTACAAAGAGGAGATGAGGGTGAGATTACACTTGTGCAATCCCACTATGTGGACAAGATTTTGAGTCACTTTGGATATAGTGGCTGCAAGCCAGCTTCTACTCCTTATGATCCCAGCGTGCTATTAAGGAAAAACCGAAGAATAGCAAGGGATCAACTGAGATACTCCCAAATAATTGGTTCATTGATGTACTTGGCTAGTGCAACGAGGCCTGACATCTCATTTGCTGTAAGCAAGCTGAGCCGGTTTGTCTTAAATCCGGGAGATGATCATTGGCAGGCTCTGGAAAGAGTAATGCGCTATCTAAAGGGCATTATGAGTTATGGAATTCACTATACCAGGTATCCAAAAGTACTAGAAGGGTATAGTGACTCAAACTGGATATCTGATGCTGATAAGATAAAAGCCACAAGTGGATATGTGTTCGCACTTGGAGGTGGCACTGTTTCCTGGAAGCCTTGCAAGCAGACCATCTTAACGAGGTCAACAATGGAAGTAGAACTTACAGCACTAGATACTGCGACAGTTGAGGCCGAGTGGCTTCGTGAACTCCTGATGGATTTGCCGGTGGTTGGAAAACCAGTGCCAGCTATCCTAATGAACTGTGACAATCAAACAATGATTATTAAAGTGAACAGTTCAAAGGACAACATGAAGTCATCTAGGCATATCAAGAGAAGACTGAAATCTGTCAGAAAGCAGAAAAACTCCGGAGTGATAGCATTGGACTATGTCCAAACGGCTAGAAATCTGGCAGATCAGTTTACCAAGGGGCTACCACGTAATGTGATAGACAGTGCATCGATGGAAATGGGCTTGATACCCACCTAA
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| Protein seq | MSAPGAGAAAGAAAASGDGAPGAGAVRAGAAAGAVAASGDGTPGAGGVANVNSNGGNSASQSSGGPFSGHASRKSIASLVWVIFGSGFAAALKPHAFDGSNYKRWKARALLWLTAMQCFYVSRGKRSEPPLSPEEEAKFKASDCLFRGALISVLADNIVDVYMHMPFGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLTKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDNWGKKVEGGSSANMVQKKNRHASHNNNKKVKPDVKPKVATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRKCANMVISEGGGTSGYGKILPIVLFVFHSPDWWVDTGANIHVRRGSSLLMGNGSLTAVYGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGCLFRFSLNDMCNNYNVVNHISENDESNDEALHFFKTYKAEVENQLERKIKRLTSDRGGEYFSNEFASFCEEFGIIHERTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWSDAVLITCHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKQKLRPNTVDCVFLGYAIHSVGYRFLIVNSRVPDIHVGTIIESRDATFFENEFSMKHTPSTSSQETVMPHKHFAPIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNDTWEVVERPYGCKPIGCKWVFKKKLSPDGTIEKYKARLVAKGYTQKEGKDFFDTYSPVAHLTMIRVLLALAASHGVLVHQMNVKTAFLNGELEEEIYMDQPDGYVLEGFVVNGADKCVYYRYGGGEGVILCLYVDDILIFGTNLNVIEGVKDYLSKSFEMKDLGEADVILNIKLQRGDEGEITLVQSHYVDKILSHFGYSGCKPASTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVLNPGDDHWQALERVMRYLKGIMSYGIHYTRYPKVLEGYSDSNWISDADKIKATSGYVFALGGGTVSWKPCKQTILTRSTMEVELTALDTATVEAEWLRELLMDLPVVGKPVPAILMNCDNQTMIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPRNVIDSASMEMGLIPT |
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| Function | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [UniProtKB/Swiss-Prot:P10978] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g35800 | LOC_Os11g35800.1 | Chr11 | 21011141 | 21015508 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCTGCGCCTGGAGCCGGAGCTGCCGCCGGCGCCGCTGCTGCCTCTGGAGATGGCGCGCCGGGAGCCGGAGCCGTTCGAGCCGGAGCTGCCGCTGGCGCCGTTGCTGCCTCTGGAGATGGCACGCCGGGAGCCGGAGGCGTTGCGAACGTCAACTCCAACGGAGGCAATTCTGCCTCACAATCCAGCGGAGGGCCATTCTCGGGTCATGCTAGTCGCAAGTCAATTGCGTCCTTGGTATGGGTCATTTTCGGTAGTGGCTTTGCTGCTGCACTGAAACCACATGCTTTTGATGGTTCTAACTATAAGAGGTGGAAAGCACGTGCACTATTGTGGTTGACAGCGATGCAATGCTTCTATGTTTCACGGGGCAAACGAAGTGAACCACCTCTTTCTCCTGAGGAAGAGGCTAAATTCAAGGCTTCGGATTGCCTGTTCCGTGGAGCATTGATCAGTGTACTCGCTGACAATATAGTGGACGTGTACATGCACATGCCTTTCGGGAAGGACATGTGGGATGCACTTGAGGCCAAGTTCGGAGTTTCCGACGCCGGCAGTGAGCTGTATGTCATGGAGCAGTTTTATGACTACAAGATGGTCGATGACCGTTCTGTAGTAGAACAAGCTCATGAGATTCAGATGCTGACTAAGGAACTTGAGAACAACAACTGTGAGTTGCCGGACAAGTTTGTGGCGGGTGGCATTATTGCCAAATTGCCACCTTCTTGGTCGGACTTTGCCACTTCTCTAAAGCACAAGAGGCAAGAGTTCAGTGTTTCTGATCTCATTGGCTCTTTGGGTGTTGAGGAGAAGGCGAGGGCAAAGGACAACTGGGGCAAAAAGGTTGAGGGAGGTTCTAGTGCCAATATGGTACAGAAGAAGAACCGTCATGCATCCCACAACAACAACAAGAAAGTCAAGCCTGATGTCAAACCCAAGGTTGCAACCAACTTTAAGAAGAAAGGCAAGGGAAAGGCAAAGGGCGACTGCTTTGTGTGTGGCAAGTCTGGGCATTGGGCCAAGGACTGTCCTGAGCGCAAAGACAGGAAGTGTGCCAACATGGTCATTAGCGAGGGCGGAGGAACATCGGGGTACGGTAAAATATTACCTATAGTTCTCTTTGTTTTTCACTCACCTGATTGGTGGGTGGATACTGGTGCTAATATTCATGTCAGGAGAGGTTCCTCCTTGTTGATGGGAAACGGGTCGCTTACGGCTGTTTATGGTGTTGGTACGGTCGATCTGAAGTTTACTTCGGGAAAGACCGTGCAGCTGAAGAACGTGCAACATGTCCCTTCAATAAAGAAGAATCTTGTTAGCGGCTCTCTATTGTGTAGAGAAGGTTTTAGACTTGTGTTTGAATCCAATAAATGTGTCGTATCTAAATATGGAACTTTTGTTGGAAAAGGTTATGACAGCGGATGCTTGTTCCGCTTTTCTTTGAATGACATGTGTAATAATTATAATGTTGTGAACCATATTAGCGAGAATGATGAGTCTAATGACGAAGCATTGCATTTCTTTAAGACCTATAAAGCTGAGGTAGAAAACCAACTTGAAAGGAAAATCAAACGGTTGACGTCTGATAGAGGTGGGGAGTATTTTTCTAATGAGTTTGCATCCTTTTGCGAAGAGTTTGGAATTATTCATGAGAGGACGCCTCCCTATTCACCCCAATCAAATGGGGTGGCCGAAAGAAAGAACCGTACTCTAACTGAGATGGTGAATGCCATGTTAGACACTGCGGGGCTTTCCAAGGAATGGTGGAGTGATGCAGTTTTGATTACGTGTCATGTCCTGAATAAAATTCCAATGAAGCATAAGGAAGTAACACCATTCGAGGAATGGGAAAGGAAGAAATTAAATCTCTCATACCTACGAACATGGGGCTGTTTGGCCAAGGTAAATGTACCTATAGCCAAAAAGCAGAAACTTAGACCAAATACTGTTGATTGTGTGTTCCTTGGTTATGCTATTCACAGTGTAGGTTATAGATTCTTAATAGTAAACTCTAGAGTACCCGACATACATGTTGGTACAATTATTGAGTCCAGAGATGCTACATTCTTTGAGAATGAATTTTCCATGAAACATACACCTAGCACTTCTAGTCAAGAAACTGTCATGCCCCATAAGCACTTTGCACCGATAGAACACAATGATCAAACGCCTGAGGAAAATCCTGAGGAGGACAACATTGTAGATACTCGTAAGAGTAAGAGACAAAGGGTTGCAAAATCCTTTGGAGATGACTACATTGTATACCTCGTGGATGACACCCCAAGAACCATAGAAGAGGCATATTCATCTCCTGACGCTGACTACTGGAAGGAAGCAGTACGCAGTGAGATGGACTCGATTATGTCTAATGATACTTGGGAAGTCGTTGAGCGTCCATATGGGTGCAAGCCTATAGGATGCAAATGGGTTTTCAAGAAAAAGCTTAGCCCTGATGGTACAATCGAAAAGTACAAGGCAAGACTTGTGGCCAAGGGTTATACCCAAAAGGAAGGCAAGGATTTTTTCGACACATACTCACCAGTTGCTCACTTGACAATGATTCGAGTACTACTTGCTCTGGCAGCCTCTCATGGTGTTCTCGTCCATCAGATGAACGTTAAGACAGCTTTCCTAAACGGAGAGCTGGAGGAGGAGATCTATATGGATCAACCAGACGGGTATGTACTAGAAGGCTTTGTTGTGAACGGAGCTGACAAATGTGTGTACTATCGCTATGGTGGGGGAGAAGGAGTGATCTTGTGCTTATATGTCGATGACATATTGATCTTTGGGACCAACCTCAATGTGATTGAGGGGGTCAAGGACTATCTGTCCAAGAGTTTTGAAATGAAGGATTTGGGAGAGGCTGATGTTATTCTTAACATTAAACTACAAAGAGGAGATGAGGGTGAGATTACACTTGTGCAATCCCACTATGTGGACAAGATTTTGAGTCACTTTGGATATAGTGGCTGCAAGCCAGCTTCTACTCCTTATGATCCCAGCGTGCTATTAAGGAAAAACCGAAGAATAGCAAGGGATCAACTGAGATACTCCCAAATAATTGGTTCATTGATGTACTTGGCTAGTGCAACGAGGCCTGACATCTCATTTGCTGTAAGCAAGCTGAGCCGGTTTGTCTTAAATCCGGGAGATGATCATTGGCAGGCTCTGGAAAGAGTAATGCGCTATCTAAAGGGCATTATGAGTTATGGAATTCACTATACCAGGTATCCAAAAGTACTAGAAGGGTATAGTGACTCAAACTGGATATCTGATGCTGATAAGATAAAAGCCACAAGTGGATATGTGTTCGCACTTGGAGGTGGCACTGTTTCCTGGAAGCCTTGCAAGCAGACCATCTTAACGAGGTCAACAATGGAAGTAGAACTTACAGCACTAGATACTGCGACAGTTGAGGCCGAGTGGCTTCGTGAACTCCTGATGGATTTGCCGGTGGTTGGAAAACCAGTGCCAGCTATCCTAATGAACTGTGACAATCAAACAATGATTATTAAAGTGAACAGTTCAAAGGACAACATGAAGTCATCTAGGCATATCAAGAGAAGACTGAAATCTGTCAGAAAGCAGAAAAACTCCGGAGTGATAGCATTGGACTATGTCCAAACGGCTAGAAATCTGGCAGATCAGTTTACCAAGGGGCTACCACGTAATGTGATAGACAGTGCATCGATGGAAATGGGCTTGATACCCACCTAA
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| Protein seq | MSAPGAGAAAGAAAASGDGAPGAGAVRAGAAAGAVAASGDGTPGAGGVANVNSNGGNSASQSSGGPFSGHASRKSIASLVWVIFGSGFAAALKPHAFDGSNYKRWKARALLWLTAMQCFYVSRGKRSEPPLSPEEEAKFKASDCLFRGALISVLADNIVDVYMHMPFGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLTKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDNWGKKVEGGSSANMVQKKNRHASHNNNKKVKPDVKPKVATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRKCANMVISEGGGTSGYGKILPIVLFVFHSPDWWVDTGANIHVRRGSSLLMGNGSLTAVYGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGCLFRFSLNDMCNNYNVVNHISENDESNDEALHFFKTYKAEVENQLERKIKRLTSDRGGEYFSNEFASFCEEFGIIHERTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWSDAVLITCHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKQKLRPNTVDCVFLGYAIHSVGYRFLIVNSRVPDIHVGTIIESRDATFFENEFSMKHTPSTSSQETVMPHKHFAPIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNDTWEVVERPYGCKPIGCKWVFKKKLSPDGTIEKYKARLVAKGYTQKEGKDFFDTYSPVAHLTMIRVLLALAASHGVLVHQMNVKTAFLNGELEEEIYMDQPDGYVLEGFVVNGADKCVYYRYGGGEGVILCLYVDDILIFGTNLNVIEGVKDYLSKSFEMKDLGEADVILNIKLQRGDEGEITLVQSHYVDKILSHFGYSGCKPASTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVLNPGDDHWQALERVMRYLKGIMSYGIHYTRYPKVLEGYSDSNWISDADKIKATSGYVFALGGGTVSWKPCKQTILTRSTMEVELTALDTATVEAEWLRELLMDLPVVGKPVPAILMNCDNQTMIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPRNVIDSASMEMGLIPT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0442550 | SBH | 0.012027 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g19950 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0442550 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023620 | SBH | 0.0 | 0.0 | 3.443123 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023270 | SBH | 0.0 | 0.0 | 4.110581 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0338200 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0350000 | SBH | 0 | 0.032661 | 0.001737 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023900 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023160 | SBH | 0.0 | 0.0 | 1.546784 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023880 | SBH | 0.595548 | 2.476848 | 2.937780 |
