Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g33942 | OGI:11058510 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:19838907-19839752 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGACTGCGATCCGTCGAATTTGAGGGTAATTTTTATTTCCGCTAAACGTTTTGGTTCTTAGGTACACCAACCATTCACCCTCTCTGGTTGGCTTAATTTTTAATATTCGATCCTACAGAAAGGTTCCACAATTATCACGAAATAAAACTACAAAAGTATGGTTGTTAATCCTCCTTAATTAGCAACTAATTAAAAGATGCTCATGAAGAAAAATGCATGCATGCACGTATGGCAATTACTCAAGCTCATGAATACGTACCAGCTGAAAATCGTGGTTATATGCAGCACCGATAAGTTTCTGGAGAAGGAGAAGAGGTAGCTGGTTCTCCATCAAGATCACGTCGGATTTTATACCGCCGAACAAGTACAAGCAGCCGTGCTCGCTGAAGACAGGGTCATCAGGTTCATAGTCCTCGACTCTCCCATTTTGCTCAAACGCCCTCGCCATCTCTAGCAAGAAGCAGCCGTCCTTGAGCATCATCTCCACGAAATCTGTACCTTGGTACCATTTGTCCTCTAAATTTTCGTACGTATCCTGAAGCTGCAACTTTATCTCCTCAACGACAGCGACGAAATAATCAAGAGGCCTCCCACTCCTGTTGACCAAGTGTGCCACCGCGCGGCACTTGTGCTTCTCCATCGGCATCAACGCAGGATCACCGTGATGGAAAGGCCCCAGCGACACCACCTGAGGCCGGTAGGCGTCGGGGTTCGTCATGTTCTTGATGTACTGCGGCACCCGGTAGATGGAGTGCCCCGGCATCGATCCTCGCGGGCTGCCGTCGCCGGCGTCACCGCGGATGTACCTCTCGATCTCTGCCACCCAGCGAGAGCTCATGGCCAT
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| CDS seq | ATGGCCATGAGCTCTCGCTGGGTGGCAGAGATCGAGAGGTACATCCGCGGTGACGCCGGCGACGGCAGCCCGCGAGGATCGATGCCGGGGCACTCCATCTACCGGGTGCCGCAGTACATCAAGAACATGACGAACCCCGACGCCTACCGGCCTCAGGTGGTGTCGCTGGGGCCTTTCCATCACGGTGATCCTGCGTTGATGCCGATGGAGAAGCACAAGTGCCGCGCGGTGGCACACTTGGTCAACAGGAGTGGGAGGCCTCTTGATTATTTCGTCGCTGTCGTTGAGGAGATAAAGTTGCAGCTTCAGGATACGTACGAAAATTTAGAGGACAAATGGTACCAAGGTACAGATTTCGTGGAGATGATGCTCAAGGACGGCTGCTTCTTGCTAGAGATGGCGAGGGCGTTTGAGCAAAATGGGAGAGTCGAGGACTATGAACCTGATGACCCTGTCTTCAGCGAGCACGGCTGCTTGTACTTGTTCGGCGGTATAAAATCCGACGTGATCTTGATGGAGAACCAGCTACCTCTTCTCCTTCTCCAGAAACTTATCGGTGCTGCATATAACCACGATTTTCAGCTGGATCGAATATTAAAAATTAAGCCAACCAGAGAGGGTGAATGGTTGGTGTACCTAAGAACCAAAACGTTTAGCGGAAATAAAAATTACCCTCAAATTCGACGGATCGCAGTCTAA
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| Protein seq | MAMSSRWVAEIERYIRGDAGDGSPRGSMPGHSIYRVPQYIKNMTNPDAYRPQVVSLGPFHHGDPALMPMEKHKCRAVAHLVNRSGRPLDYFVAVVEEIKLQLQDTYENLEDKWYQGTDFVEMMLKDGCFLLEMARAFEQNGRVEDYEPDDPVFSEHGCLYLFGGIKSDVILMENQLPLLLLQKLIGAAYNHDFQLDRILKIKPTREGEWLVYLRTKTFSGNKNYPQIRRIAV |
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| Function | UPF0481 protein At3g47200 [UniProtKB/Swiss-Prot:Q9SD53] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g33942 | LOC_Os11g33942.1 | Chr11 | 19838907 | 19839752 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCATGAGCTCTCGCTGGGTGGCAGAGATCGAGAGGTACATCCGCGGTGACGCCGGCGACGGCAGCCCGCGAGGATCGATGCCGGGGCACTCCATCTACCGGGTGCCGCAGTACATCAAGAACATGACGAACCCCGACGCCTACCGGCCTCAGGTGGTGTCGCTGGGGCCTTTCCATCACGGTGATCCTGCGTTGATGCCGATGGAGAAGCACAAGTGCCGCGCGGTGGCACACTTGGTCAACAGGAGTGGGAGGCCTCTTGATTATTTCGTCGCTGTCGTTGAGGAGATAAAGTTGCAGCTTCAGGATACGTACGAAAATTTAGAGGACAAATGGTACCAAGGTACAGATTTCGTGGAGATGATGCTCAAGGACGGCTGCTTCTTGCTAGAGATGGCGAGGGCGTTTGAGCAAAATGGGAGAGTCGAGGACTATGAACCTGATGACCCTGTCTTCAGCGAGCACGGCTGCTTGTACTTGTTCGGCGGTATAAAATCCGACGTGATCTTGATGGAGAACCAGCTACCTCTTCTCCTTCTCCAGAAACTTATCGGTGCTGCATATAACCACGATTTTCAGCTGGATCGAATATTAAAAATTAAGCCAACCAGAGAGGGTGAATGGTTGGTGTACCTAAGAACCAAAACGTTTAGCGGAAATAAAAATTACCCTCAAATTCGACGGATCGCAGTCTAA
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| Protein seq | MAMSSRWVAEIERYIRGDAGDGSPRGSMPGHSIYRVPQYIKNMTNPDAYRPQVVSLGPFHHGDPALMPMEKHKCRAVAHLVNRSGRPLDYFVAVVEEIKLQLQDTYENLEDKWYQGTDFVEMMLKDGCFLLEMARAFEQNGRVEDYEPDDPVFSEHGCLYLFGGIKSDVILMENQLPLLLLQKLIGAAYNHDFQLDRILKIKPTREGEWLVYLRTKTFSGNKNYPQIRRIAV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0541200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g33440 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0541200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016440 | RBH | 1.924836 | 0.0 | 4.441315 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0016480 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016360 | RBH | 1.705922 | 0.0 | 7.307921 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015990 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016430 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0311400 | SBH | 0 | 0.010016 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0016780 | SBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0320700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0016750 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0016610 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016290 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0016070 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022710 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G016170 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0016500 | SBH | 0.0 | 0.0 | 0.0 |
