Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g25500 | OGI:11010070 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:14522645-14524762 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAATAGACTGCTTCATTTTTCGTGTGTGGGTGATGGGTCCAACACCCACCACCGAACTCAGCCAACTCCTCTTCCCAGGTCTCATCTCCGCTTTGCCGAAGGGCCGCCGGAACCAGAAGCACGTCCTCGTATTCATAATCACAATCACAGTTTTTCTTATGTGAAGAAGAGATGAGGTGTGGCCGTAGTCCTGCATCAGCATATATCATATCCTTATCTTTGTAGAATTAAGGGCTTATTTGTTTCTAAGGAAAACCAAAGGATTTCCAAAACAGAGGATTTGAATCCTGTATACAGCATTCGGTTTACAGGATTGAGCTATAGGAAATTTGAAGGGAAATTTCCTTTTGTGCCAGCTGTATCGGTAAAACACAGGAATTTTTGCATCCAGTACGACCTCTTGGAAATTTTCCTGGCGCGAAAAGAGCGCGCCACGAGCGCACTGCGCGCGTAATCTTTTCGCTCTCACGACAAAAAAGGTAGGTACCGCTGAAAGGAAAATAAAAAAAAATCACAGGAGGCAAACAGACTCGCATAGAAGCCATCGCCTTTGATCCCATCTCCTCTACCACTTCCTCTCCTGTCTCCACGATTGGGTACTGGACCTCCTCTCCCACATCGATCGCCGGCACCGGATGCACCTTCGCCGCCCAGGTGACAGGACGCAACGGCAACAACGGGAAGAGCCACGGCAGAGATCGGCAAGGACGCTTTGATTGCAGGTTTGGTGCCTCCTCTTCCGTTGTTATGCATAGATCTGATGCCCCCTGCTGCTTCCTTGCATACACCTTAGCATTTGGGTCGCTGCGGATGGGGTCGTAGCTGTAACACACAAGGGTTCATAGTGTCTGCCCAATGGCAATCTTGTTTGGTTCAGAGAAGTTGTTGCCGGCGGGCGGCGGCGATGAGCAGCAACAAGTAGTAGGCGAGCTAACCCTGTATTTGTGGTTTGTGTTTGATGAATCACCTAACGGTGACGATTGGATGATATGGTTCTTTCATCCATATTCTGTATATGTTTATGCATGTAAAATTAAGGTCCTTCTTCTAGCTACTTAGCTAGCATCTTGATGAGCAGAATGAGCACATCAGTTATCAGTTCATAATTTTTTAATAGCATCCAACTTTAATTTTTGTTCTGTTTTATCCTCCCTGTACTATTTATGATTTATTACAGATGTCTAATCGTCGGAACTATGAGCAACAAGGCCATCGTTCACAATCACAAGGAGTCAGTAATGTTGAAGCTGATATTTCAATCACATGGAGCTAGAAATTGCGGTGTATTTGCATAACCAGCATCTACGAGATAAAATTTACCACCAGGAACTTGAAAACCATGATTAAGTGCATCATGTAAAACTCTTGCATCTGAAGCTGATCCCTCCCATCCAGGATGTATATGCACAAACTTCAAATCAAAATCACAAGCAACCATACAATTTTGAGAGATTGATTGCTTCCTATTTCTATATGGCTCTTGCTCATCCAATGGAAGTTTCATAGGGATATGAGTACCATCTATAGCACCAATACAATTCTACACAAGACATGTCAAAGTTATTTTTGTCCAGTTCATGAAAAAATAGGATATTCAAAATATGAAATCAGAACAACTTAACAAGTGGCCATACCTGAAAAAAGGGGTAAAATTGTGGTTTCCTCAAGATTGGATGTGGGTGTAGGGATGGTGCACGAATGTAGACAGATGTGAGATTTGTGATTGCTTCCAGCACTGCTTTGAAATATCTATGTATTGTATCTGGACTATGCTGAAACCAATCTTGAAGTGTTTCATTGGTTGCATTTTTTGCCACTGTATATAAGAATATAGCAATCTGCTCTTCTACTGAAACATATATTGTGTCAGTTATGTACTCTTTCTCACGTAACTTATTGACTAGTGCATGAAAAATGTCGACCTCCATACGGAAGTTTCTTTTGCATAATCTTTCATGTCCTGTTAAAATCTCATGTACACGGCAACCCCCTGTAAGTTTTGACGTGTGCATTGGTCTCCTAATACAAGATGATTGTGATGAATCTCCTAAAGTAGGCAGAACAAAATGAATGAACTCATCATCACTTTCTGATATACGTCGGTAGCTTGGATTCAT
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| CDS seq | ATGAATCCAAGCTACCGACGTATATCAGAAAGTGATGATGAGTTCATTCATTTTGTTCTGCCTACTTTAGGAGATTCATCACAATCATCTTGTATTAGGAGACCAATGCACACGTCAAAACTTACAGGGGGTTGCCGTGTACATGAGATTTTAACAGGACATGAAAGATTATGCAAAAGAAACTTCCGTATGGAGGTCGACATTTTTCATGCACTAGTCAATAAGTTACGTGAGAAAGAGTACATAACTGACACAATATATGTTTCAGTAGAAGAGCAGATTGCTATATTCTTATATACAGTGGCAAAAAATGCAACCAATGAAACACTTCAAGATTGGTTTCAGCATAGTCCAGATACAATACATAGATATTTCAAAGCAGTGCTGGAAGCAATCACAAATCTCACATCTGTCTACATTCGTGCACCATCCCTACACCCACATCCAATCTTGAGGAAACCACAATTTTACCCCTTTTTTCAGAATTGTATTGGTGCTATAGATGGTACTCATATCCCTATGAAACTTCCATTGGATGAGCAAGAGCCATATAGAAATAGGAAGCAATCAATCTCTCAAAATTGTATGGTTGCTTGTGATTTTGATTTGAAGTTTGTGCATATACATCCTGGATGGGAGGGATCAGCTTCAGATGCAAGAGTTTTACATGATGCACTTAATCATGGTTTTCAAGTTCCTGGTGGACTACGGCCACACCTCATCTCTTCTTCACATAAGAAAAACTGTGATTGTGATTATGAATACGAGGACGTGCTTCTGGTTCCGGCGGCCCTTCGGCAAAGCGGAGATGAGACCTGGGAAGAGGAGTTGGCTGAGTTCGGTGGTGGGTGTTGGACCCATCACCCACACACGAAAAATGAAGCAGTCTATTAG
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| Protein seq | MNPSYRRISESDDEFIHFVLPTLGDSSQSSCIRRPMHTSKLTGGCRVHEILTGHERLCKRNFRMEVDIFHALVNKLREKEYITDTIYVSVEEQIAIFLYTVAKNATNETLQDWFQHSPDTIHRYFKAVLEAITNLTSVYIRAPSLHPHPILRKPQFYPFFQNCIGAIDGTHIPMKLPLDEQEPYRNRKQSISQNCMVACDFDLKFVHIHPGWEGSASDARVLHDALNHGFQVPGGLRPHLISSSHKKNCDCDYEYEDVLLVPAALRQSGDETWEEELAEFGGGCWTHHPHTKNEAVY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g25500 | LOC_Os11g25500.1 | Chr11 | 14522645 | 14524762 | - | MSU_osa1r7 | ||
| CDS seq | ATGAATCCAAGCTACCGACGTATATCAGAAAGTGATGATGAGTTCATTCATTTTGTTCTGCCTACTTTAGGAGATTCATCACAATCATCTTGTATTAGGAGACCAATGCACACGTCAAAACTTACAGGGGGTTGCCGTGTACATGAGATTTTAACAGGACATGAAAGATTATGCAAAAGAAACTTCCGTATGGAGGTCGACATTTTTCATGCACTAGTCAATAAGTTACGTGAGAAAGAGTACATAACTGACACAATATATGTTTCAGTAGAAGAGCAGATTGCTATATTCTTATATACAGTGGCAAAAAATGCAACCAATGAAACACTTCAAGATTGGTTTCAGCATAGTCCAGATACAATACATAGATATTTCAAAGCAGTGCTGGAAGCAATCACAAATCTCACATCTGTCTACATTCGTGCACCATCCCTACACCCACATCCAATCTTGAGGAAACCACAATTTTACCCCTTTTTTCAGAATTGTATTGGTGCTATAGATGGTACTCATATCCCTATGAAACTTCCATTGGATGAGCAAGAGCCATATAGAAATAGGAAGCAATCAATCTCTCAAAATTGTATGGTTGCTTGTGATTTTGATTTGAAGTTTGTGCATATACATCCTGGATGGGAGGGATCAGCTTCAGATGCAAGAGTTTTACATGATGCACTTAATCATGGTTTTCAAGTTCCTGGTGGACTACGGCCACACCTCATCTCTTCTTCACATAAGAAAAACTGTGATTGTGATTATGAATACGAGGACGTGCTTCTGGTTCCGGCGGCCCTTCGGCAAAGCGGAGATGAGACCTGGGAAGAGGAGTTGGCTGAGTTCGGTGGTGGGTGTTGGACCCATCACCCACACACGAAAAATGAAGCAGTCTATTAG
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| Protein seq | MNPSYRRISESDDEFIHFVLPTLGDSSQSSCIRRPMHTSKLTGGCRVHEILTGHERLCKRNFRMEVDIFHALVNKLREKEYITDTIYVSVEEQIAIFLYTVAKNATNETLQDWFQHSPDTIHRYFKAVLEAITNLTSVYIRAPSLHPHPILRKPQFYPFFQNCIGAIDGTHIPMKLPLDEQEPYRNRKQSISQNCMVACDFDLKFVHIHPGWEGSASDARVLHDALNHGFQVPGGLRPHLISSSHKKNCDCDYEYEDVLLVPAALRQSGDETWEEELAEFGGGCWTHHPHTKNEAVY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0622500 | SBH | 3.553726 | 3.495456 | 8.753943 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42464 | RBH | 1.749177 | 1.539302 | 1.748584 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0622500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0012690 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012590 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0012630 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0012370 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0012670 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0215000 | RBH | 0.0600705 | 0.2138135 | 0.220623 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0012560 | RBH | 0.000000 | 0.487216 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0228900 | RBH | 0.0179875 | 1.1578765 | 1.13894 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012660 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012780 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0012410 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0012270 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0012590 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G012450 | RBH | 0.000000 | 5.717339 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0012530 | RBH | 0.0 | 0.000000 | 0.0 |
