Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g17120 | OGI:11027600 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:9508232-9509376 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATCCATTAAAATTTAATCTAATTATAAAATTAGAAATAAAATTTATGTAGTAAATACTAGCTATAGTAAAGTTTGCTCGAGCTGTAAAATATTTCTAGATGCGCTACTGGTTCTTGCAGTAAAACAAAATTCTCATGGGTCAAGAAACTCATTCATGTAAGAGTTTTAGGCTATTTTCTCTTTGAAAATAATTTGCAATGACCACCTAATATTTTGAGCAGGCGGTTGTACCATGTATATTGAAAAGAGTAGGGGTAATGAAATAAATAATTATCGATTAGGGTAATAGTACGAAGTTAAAAATAGAAGTACGTACCTTTTATCGTTGAGAAATTCCCTGAGTTTATTGATGAGCCGCTCCTCATCCCATGCATCTATGGCTCCATAATCGAGCTCTGTTATATTGATCAGTATATTTTTGAATATTTTCCTTATGTCGGGTTTTTGAGAAACTGACACAAATGCTTGGCAATCAAACTGCCCACCAATTTTTTCATAAACTTGACGGGCAAGAGTTGTCTTTCCTAGTCCACCAAGTCCAACAATAGATACCACCTGCAGTTTTTGCAGCAATTTATCCTCCCCTTCAGTCAAAAACCTGATGAGCTCTACTCTTGGTGTATCAATGCCCACAAGGTTTTCTTTTTCTGCATAGAGTGCTGGTAATCGAGGATCGATCGGCACCACACCAATTGAACTTGACAAGGTCTCATCAAAGTTGTACCTCTTGCGACGTTCACTCGCCATGTCAACACGAGCCTTTAACTTTATTATTTGATGAGCCATCTTGTCACCTGCTCAAAGCATCCGCAGTTGTCGAATGCTCTTCTGCAAGAAACCTTTTATGCTTTCACGCCTGTGGGCATCACCATCTACCTGGTACATGAAATAATCAACTCTATCCTCAATATCATACGATAACTCCCGGATCTGGTCCCTCCACTCCTTCACTTGGATATCGAGGTCATCGATATCCTCTAGCTTTAGGAGTAGAGCATTCATACTACTTAGCTCATCCTTCAGGGAGAGGATCTCATTATCTACTCCCTTCAGCCTGTTGTACTTCATCTGCAATAGAGTAGAGAGTTTCCCAATCACAGGGCACAGGACCCCTGTGGCAACGCTCACCATGGTGTGTGCCAT
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| CDS seq | ATGGCACACACCATGGTGAGCGTTGCCACAGGGGTCCTGTGCCCTGTGATTGGGAAACTCTCTACTCTATTGCAGATGAAGTACAACAGGCTGAAGGGAGTAGATAATGAGATCCTCTCCCTGAAGGATGAGCTAAGTAGTATGAATGCTCTACTCCTAAAGCTAGAGGATATCGATGACCTCGATATCCAAGTGAAGGAGTGGAGGGACCAGATCCGGGAGTTATCGTATGATATTGAGGATAGAGTTGATTATTTCATGTACCAGGTAGATGGTGATGCCCACAGGCGTGAAAGCATAAAAGGTGACAAGATGGCTCATCAAATAATAAAGTTAAAGGCTCGTGTTGACATGGCGAGTGAACGTCGCAAGAGGTACAACTTTGATGAGACCTTGTCAAGTTCAATTGGTGTGGTGCCGATCGATCCTCGATTACCAGCACTCTATGCAGAAAAAGAAAACCTTGTGGGCATTGATACACCAAGAGTAGAGCTCATCAGGTTTTTGACTGAAGGGGAGGATAAATTGCTGCAAAAACTGCAGGTGGTATCTATTGTTGGACTTGGTGGACTAGGAAAGACAACTCTTGCCCGTCAAGTTTATGAAAAAATTGGTGGGCAGTTTGATTGCCAAGCATTTGTGTCAGTTTCTCAAAAACCCGACATAAGGAAAATATTCAAAAATATACTGATCAATATAACAGAGCTCGATTATGGAGCCATAGATGCATGGGATGAGGAGCGGCTCATCAATAAACTCAGGGAATTTCTCAACGATAAAAGATTAAATTTTAATGGATAA
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| Protein seq | MAHTMVSVATGVLCPVIGKLSTLLQMKYNRLKGVDNEILSLKDELSSMNALLLKLEDIDDLDIQVKEWRDQIRELSYDIEDRVDYFMYQVDGDAHRRESIKGDKMAHQIIKLKARVDMASERRKRYNFDETLSSSIGVVPIDPRLPALYAEKENLVGIDTPRVELIRFLTEGEDKLLQKLQVVSIVGLGGLGKTTLARQVYEKIGGQFDCQAFVSVSQKPDIRKIFKNILINITELDYGAIDAWDEERLINKLREFLNDKRLNFNG |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g17120 | LOC_Os11g17120.1 | Chr11 | 9508232 | 9509376 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCACACACCATGGTGAGCGTTGCCACAGGGGTCCTGTGCCCTGTGATTGGGAAACTCTCTACTCTATTGCAGATGAAGTACAACAGGCTGAAGGGAGTAGATAATGAGATCCTCTCCCTGAAGGATGAGCTAAGTAGTATGAATGCTCTACTCCTAAAGCTAGAGGATATCGATGACCTCGATATCCAAGTGAAGGAGTGGAGGGACCAGATCCGGGAGTTATCGTATGATATTGAGGATAGAGTTGATTATTTCATGTACCAGGTAGATGGTGATGCCCACAGGCGTGAAAGCATAAAAGGTGACAAGATGGCTCATCAAATAATAAAGTTAAAGGCTCGTGTTGACATGGCGAGTGAACGTCGCAAGAGGTACAACTTTGATGAGACCTTGTCAAGTTCAATTGGTGTGGTGCCGATCGATCCTCGATTACCAGCACTCTATGCAGAAAAAGAAAACCTTGTGGGCATTGATACACCAAGAGTAGAGCTCATCAGGTTTTTGACTGAAGGGGAGGATAAATTGCTGCAAAAACTGCAGGTGGTATCTATTGTTGGACTTGGTGGACTAGGAAAGACAACTCTTGCCCGTCAAGTTTATGAAAAAATTGGTGGGCAGTTTGATTGCCAAGCATTTGTGTCAGTTTCTCAAAAACCCGACATAAGGAAAATATTCAAAAATATACTGATCAATATAACAGAGCTCGATTATGGAGCCATAGATGCATGGGATGAGGAGCGGCTCATCAATAAACTCAGGGAATTTCTCAACGATAAAAGATTAAATTTTAATGGATAA
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| Protein seq | MAHTMVSVATGVLCPVIGKLSTLLQMKYNRLKGVDNEILSLKDELSSMNALLLKLEDIDDLDIQVKEWRDQIRELSYDIEDRVDYFMYQVDGDAHRRESIKGDKMAHQIIKLKARVDMASERRKRYNFDETLSSSIGVVPIDPRLPALYAEKENLVGIDTPRVELIRFLTEGEDKLLQKLQVVSIVGLGGLGKTTLARQVYEKIGGQFDCQAFVSVSQKPDIRKIFKNILINITELDYGAIDAWDEERLINKLREFLNDKRLNFNG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0258500 | SBH | 0.000000 | 0.061899 | 1.297570 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g17330 | RBH | 0.0 | 0.0 | 0.053447 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0258500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0010270 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0010160 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0010160 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0009380 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009360 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0139600 | SBH | 1.5579915 | 2.5652 | 0.4845945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009450 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0009560 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0009550 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0009500 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0009400 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009530 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G009650 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0009450 | SBH | 0.0 | 0.0 | 0.0 |
