Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsGoSa_11g0009500 OGI:11025030 | 16/16 GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) Chr11:8805016-8808649
Gene Symbol -
DNA seq

atggagcatgccatggtgagcgttgcgacgggtgttgcgagtgccgtactcgagaagatctccaccctgatggagaaggagtacagcaagctgaagggtgtgcgcgacgagattatctccctcaaggacgagctaagcagcatgaatgctttcctcctgaagctgtcagatattgaagaactcgatgttcaggtcaaggaatggaggaaccaaatccgagagctctcctacgacatcgaggattgcattgacggtttcatgcaccgagtcaattgtagctcagacagctctaatacgaaatgtttcttcagaaaggtaattcaccaggtgaggacacttggagctcgtcacgcaatctcgaacgacatactgaagctgaaggctcgcgttgatagcgcaagtgagcgattcaagaggtacaacattgatccagccatcacaagttctagtgctattgtacctgttgaccctcggttaccagcactatatgcagaggcagaaagcctagttggtattgatgaaccaaccaatgatatcatcaagtggttgacagaaggggatggtgacttggttcaaaagctaaaggtagtatccatttggggacccggaggtttagggaagaccactcttgcccgtcaagtatatgacaaaattggaagacaatttgattgccaagcatttgtgtcagtgtcccagaaacctgatatgagaaaagtattcagaaatatactaattagtgtcaccggggtggagtacataggaattgaagcatgggatgaggagcggctcatcaacaaactgagggatttcatcaattgtaaaaggtattacctacttttactgttctacatatcaatcttgaaataaaatagctacttctttggattgtatatgatgatcattcagatccttgaacaatatatacctcttaatcatgtactactgtagtttTActaacacatacttccatgataaaatgcaaaataggtactttattgtaattgatgatatctggagtaccacagactggcaaacaatcagatgtgttttgctggacagtaatattggtagtagagtattagccacaacacaaatcagttatgtggcacaatcatgttgtcctgctgaccaagataaagtttttgaaatgaaacatcttactgctgttcatgctgaaaagttatttctcaaaagaatatttggatcaggagacagttgccctcctcacttaaaagaggtatcaaatggcatattaagaaaatgtggtggtttaccattggctatcatcacaatggccagtttgttggtaaataaaccacaaacaaaagaacaatgggagaagtatcgagattctattgttgaaaatgatcccattgtgaatcggatgcaaaaaatcctatctcttagttatgctgtccttccacatcatcttaagacatgtttactgtacctcagtacatttccagaagattgcataatagaaagggatcgactagtacggagatggatagctgaaggtttcattgctaccgaaagtggatgcagtttagaggaagtgggtgaagactattttaacgagctaattagcaggagcttgatacaagtggtgggaatcaaatatgatgatcgagataacacttgccgcatacatgatatggttcttgatcttattgtgtctaagtcgattgaagaaaatttcataacatttattggttaccataatcgtgtgtgcggcctacaagataaggttcgtcggctgtcccttaactttcatcatcaagaaggtaatacaattccttcaaaaagggttgtttcatgtacccgttcactaactgtttatgggtcgactaatcatatgccacctatttcggactttcagtctttgcgcgtgattaacatagaaaataatgatacattggaaaattactactttaatggtataggtagattgtttcagttgaaatacctaaggctcagtgaagtaagtatcagcaagcttcctgaggaaataggcgaactacaacaactggagacactagagctagagcatactaagataaatggattacccaaaagtattactcggcttaagaatctggtgtttttacgtgctgattacacgagcctgccagaaggagttggaaatatgaaggctttgcagaaactgtcatggataaaagttaacactagtgccccatcaacgacgttgcatgaaatgggcagtttgactgaactaagatatcttgatataaattggtgtattggtgatatgtgcagtgatatgaaaagttacacagaaagctttggttcatccatcatcaagctctgcaagcacaagcttcagtatctgcgtatccgatcagaaggcagtcaaggatgctctctcggtttcttgttgaattcttggtcctgtcctcctcatctccttcagaagtttgatatgtacacagaatactattttccaagaattccagactggatagcctcactttctaaggtcacattcctagatattaaggttaatcctgtggacgaggaggcttttaggattcttgggaacttgccttctctcattactctctggctgtggacaaaaacagtagtctgcaagagaagatttatcatacataatgttggattcaaacatttgaaagaattctactttggTttttggaggattgagatggggccaataaaatttgaggttggggccatgcctaagcttcagaagtttctttttgacataaaagcacaaggagcaggtcctccatctggagattttgacataggcattgaacacatatcttccctcaggcatctccgtatcggtatagattgtatagatgcaagaccttgtgaggttgaggtcacagaggctgctgtcaggaatgttaccagtgtccttcccagcaatctccaaattgaaatcgaaagacacagggcaggacaaatggtaaaagaaaagatggggagcacagatcatgatggtgaacaaaacaggggtattggtaagcatcaggaacaggcagtagaagatggaagctcactcaagacaagaaagaaaattctagagcgtgtaagtacgcatagctttttgagataatggatagaaatccggcctcaatatccgcaagtgggtatagataggcaatgcatagttgttcctccattctcactcaagacaagtgaataactgacacacttgcatccactgtttattttattttcttcgaaactgagcatatatgaaaaactgagcgttggttaaaataaatctgtatactgaatgtatgactttcatgtatcaaatataaatacttaagaacctattgatactcaaaggtttatcagattgactagttgcttgtccaaaactacaattattgaaactccgtctctccctatctaaaatttactgtaaatggatataaagatggactactatgcaaaaggatttcatatggatctcataccggaagttttaggcatcttgggtatcatttcatttatagaagaagtcttatggcattcttatttatgcttgttgggggaacatttggaaggagcgtaacagtcatattttctactatgtttgttatgaccttgagcaggttgctcggtcaattcaggatga

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CDS seq

atggagcatgccatggtgagcgttgcgacgggtgttgcgagtgccgtactcgagaagatctccaccctgatggagaaggagtacagcaagctgaagggtgtgcgcgacgagattatctccctcaaggacgagctaagcagcatgaatgctttcctcctgaagctgtcagatattgaagaactcgatgttcaggtcaaggaatggaggaaccaaatccgagagctctcctacgacatcgaggattgcattgacggtttcatgcaccgagtcaattgtagctcagacagctctaatacgaaatgtttcttcagaaaggtaattcaccaggtgaggacacttggagctcgtcacgcaatctcgaacgacatactgaagctgaaggctcgcgttgatagcgcaagtgagcgattcaagaggtacaacattgatccagccatcacaagttctagtgctattgtacctgttgaccctcggttaccagcactatatgcagaggcagaaagcctagttggtattgatgaaccaaccaatgatatcatcaagtggttgacagaaggggatggtgacttggttcaaaagctaaaggtagtatccatttggggacccggaggtttagggaagaccactcttgcccgtcaagtatatgacaaaattggaagacaatttgattgccaagcatttgtgtcagtgtcccagaaacctgatatgagaaaagtattcagaaatatactaattagtgtcaccggggtggagtacataggaattgaagcatgggatgaggagcggctcatcaacaaactgagggatttcatcaattgtaaaagtttTActaacacatacttccatgataaaatgcaaaataggtactttattgtaattgatgatatctggagtaccacagactggcaaacaatcagatgtgttttgctggacagtaatattggtagtagagtattagccacaacacaaatcagttatgtggcacaatcatgttgtcctgctgaccaagataaagtttttgaaatgaaacatcttactgctgttcatgctgaaaagttatttctcaaaagaatatttggatcaggagacagttgccctcctcacttaaaagaggtatcaaatggcatattaagaaaatgtggtggtttaccattggctatcatcacaatggccagtttgttggtaaataaaccacaaacaaaagaacaatgggagaagtatcgagattctattgttgaaaatgatcccattgtgaatcggatgcaaaaaatcctatctcttagttatgctgtccttccacatcatcttaagacatgtttactgtacctcagtacatttccagaagattgcataatagaaagggatcgactagtacggagatggatagctgaaggtttcattgctaccgaaagtggatgcagtttagaggaagtgggtgaagactattttaacgagctaattagcaggagcttgatacaagtggtgggaatcaaatatgatgatcgagataacacttgccgcatacatgatatggttcttgatcttattgtgtctaagtcgattgaagaaaatttcataacatttattggttaccataatcgtgtgtgcggcctacaagataaggttcgtcggctgtcccttaactttcatcatcaagaaggtagattgtttcagttgaaatacctaaggctcagtgaagtaagtatcagcaagcttcctgaggaaataggcgaactacaacaactggagacactagagctagagcatactaagataaatggattacccaaaagtattactcggcttaagaatctggtgtttttacgtgctgattacacgagcctgccagaaggagttggaaatatgaaggctttgcagaaactgtcatggataaaagttaacactagtgccccatcaacgacgttgcatgaaatgggcagtttgactgaactaagatatcttgatataaattggtgtattggtgatatgtgcagtgatatgaaaagttacacagaaagctttggttcatccatcatcaagctctgcaagcacaagcttcagtatctgcgtatccgatcagaaggcagtcaaggatgctctctcggtttcttgttgaattcttggtcctgtcctcctcatctccttcagaagtttgatatgtacacagaatactattttccaagaattccagactggatagcctcactttctaaggtcacattcctagatattaaggttaatcctgtggacgaggaggcttttaggattcttgggaacttgccttctctcattactctctggctgtggacaaaaacagtagtctgcaagagaagatttatcatacataatgttggattcaaacatttgaaagaattctactttggTttttggaggattgagatggggccaataaaatttgaggttggggccatgcctaagcttcagaagtttctttttgacataaaagcacaaggagcaggtcctccatctggagattttgacataggcattgaacacatatcttccctcaggcatctccgtatcggtatagattgtatagatgcaagaccttgtgaggttgaggtcacagaggctgctgtcaggaatgttaccagtgtccttcccagcaatctccaaattgaaatcgaaagacacagggcaggacaaatggtaaaagaaaagatggggagcacagatcatgatggtgaacaaaacaggggtattggttgctcggtcaattcaggatga

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Protein seq

MEHAMVSVATGVASAVLEKISTLMEKEYSKLKGVRDEIISLKDELSSMNAFLLKLSDIEELDVQVKEWRNQIRELSYDIEDCIDGFMHRVNCSSDSSNTKCFFRKVIHQVRTLGARHAISNDILKLKARVDSASERFKRYNIDPAITSSSAIVPVDPRLPALYAEAESLVGIDEPTNDIIKWLTEGDGDLVQKLKVVSIWGPGGLGKTTLARQVYDKIGRQFDCQAFVSVSQKPDMRKVFRNILISVTGVEYIGIEAWDEERLINKLRDFINCKSFTNTYFHDKMQNRYFIVIDDIWSTTDWQTIRCVLLDSNIGSRVLATTQISYVAQSCCPADQDKVFEMKHLTAVHAEKLFLKRIFGSGDSCPPHLKEVSNGILRKCGGLPLAIITMASLLVNKPQTKEQWEKYRDSIVENDPIVNRMQKILSLSYAVLPHHLKTCLLYLSTFPEDCIIERDRLVRRWIAEGFIATESGCSLEEVGEDYFNELISRSLIQVVGIKYDDRDNTCRIHDMVLDLIVSKSIEENFITFIGYHNRVCGLQDKVRRLSLNFHHQEGRLFQLKYLRLSEVSISKLPEEIGELQQLETLELEHTKINGLPKSITRLKNLVFLRADYTSLPEGVGNMKALQKLSWIKVNTSAPSTTLHEMGSLTELRYLDINWCIGDMCSDMKSYTESFGSSIIKLCKHKLQYLRIRSEGSQGCSLGFLLNSWSCPPHLLQKFDMYTEYYFPRIPDWIASLSKVTFLDIKVNPVDEEAFRILGNLPSLITLWLWTKTVVCKRRFIIHNVGFKHLKEFYFGFWRIEMGPIKFEVGAMPKLQKFLFDIKAQGAGPPSGDFDIGIEHISSLRHLRIGIDCIDARPCEVEVTEAAVRNVTSVLPSNLQIEIERHRAGQMVKEKMGSTDHDGEQNRGIGCSVNSG

Function Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsGoSa_11g0009500 OsGoSa_11g0009500.01 Chr11 8805016 8808649 + NAM
CDS seq

atggagcatgccatggtgagcgttgcgacgggtgttgcgagtgccgtactcgagaagatctccaccctgatggagaaggagtacagcaagctgaagggtgtgcgcgacgagattatctccctcaaggacgagctaagcagcatgaatgctttcctcctgaagctgtcagatattgaagaactcgatgttcaggtcaaggaatggaggaaccaaatccgagagctctcctacgacatcgaggattgcattgacggtttcatgcaccgagtcaattgtagctcagacagctctaatacgaaatgtttcttcagaaaggtaattcaccaggtgaggacacttggagctcgtcacgcaatctcgaacgacatactgaagctgaaggctcgcgttgatagcgcaagtgagcgattcaagaggtacaacattgatccagccatcacaagttctagtgctattgtacctgttgaccctcggttaccagcactatatgcagaggcagaaagcctagttggtattgatgaaccaaccaatgatatcatcaagtggttgacagaaggggatggtgacttggttcaaaagctaaaggtagtatccatttggggacccggaggtttagggaagaccactcttgcccgtcaagtatatgacaaaattggaagacaatttgattgccaagcatttgtgtcagtgtcccagaaacctgatatgagaaaagtattcagaaatatactaattagtgtcaccggggtggagtacataggaattgaagcatgggatgaggagcggctcatcaacaaactgagggatttcatcaattgtaaaagtttTActaacacatacttccatgataaaatgcaaaataggtactttattgtaattgatgatatctggagtaccacagactggcaaacaatcagatgtgttttgctggacagtaatattggtagtagagtattagccacaacacaaatcagttatgtggcacaatcatgttgtcctgctgaccaagataaagtttttgaaatgaaacatcttactgctgttcatgctgaaaagttatttctcaaaagaatatttggatcaggagacagttgccctcctcacttaaaagaggtatcaaatggcatattaagaaaatgtggtggtttaccattggctatcatcacaatggccagtttgttggtaaataaaccacaaacaaaagaacaatgggagaagtatcgagattctattgttgaaaatgatcccattgtgaatcggatgcaaaaaatcctatctcttagttatgctgtccttccacatcatcttaagacatgtttactgtacctcagtacatttccagaagattgcataatagaaagggatcgactagtacggagatggatagctgaaggtttcattgctaccgaaagtggatgcagtttagaggaagtgggtgaagactattttaacgagctaattagcaggagcttgatacaagtggtgggaatcaaatatgatgatcgagataacacttgccgcatacatgatatggttcttgatcttattgtgtctaagtcgattgaagaaaatttcataacatttattggttaccataatcgtgtgtgcggcctacaagataaggttcgtcggctgtcccttaactttcatcatcaagaaggtagattgtttcagttgaaatacctaaggctcagtgaagtaagtatcagcaagcttcctgaggaaataggcgaactacaacaactggagacactagagctagagcatactaagataaatggattacccaaaagtattactcggcttaagaatctggtgtttttacgtgctgattacacgagcctgccagaaggagttggaaatatgaaggctttgcagaaactgtcatggataaaagttaacactagtgccccatcaacgacgttgcatgaaatgggcagtttgactgaactaagatatcttgatataaattggtgtattggtgatatgtgcagtgatatgaaaagttacacagaaagctttggttcatccatcatcaagctctgcaagcacaagcttcagtatctgcgtatccgatcagaaggcagtcaaggatgctctctcggtttcttgttgaattcttggtcctgtcctcctcatctccttcagaagtttgatatgtacacagaatactattttccaagaattccagactggatagcctcactttctaaggtcacattcctagatattaaggttaatcctgtggacgaggaggcttttaggattcttgggaacttgccttctctcattactctctggctgtggacaaaaacagtagtctgcaagagaagatttatcatacataatgttggattcaaacatttgaaagaattctactttggTttttggaggattgagatggggccaataaaatttgaggttggggccatgcctaagcttcagaagtttctttttgacataaaagcacaaggagcaggtcctccatctggagattttgacataggcattgaacacatatcttccctcaggcatctccgtatcggtatagattgtatagatgcaagaccttgtgaggttgaggtcacagaggctgctgtcaggaatgttaccagtgtccttcccagcaatctccaaattgaaatcgaaagacacagggcaggacaaatggtaaaagaaaagatggggagcacagatcatgatggtgaacaaaacaggggtattggttgctcggtcaattcaggatga

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Protein seq

MEHAMVSVATGVASAVLEKISTLMEKEYSKLKGVRDEIISLKDELSSMNAFLLKLSDIEELDVQVKEWRNQIRELSYDIEDCIDGFMHRVNCSSDSSNTKCFFRKVIHQVRTLGARHAISNDILKLKARVDSASERFKRYNIDPAITSSSAIVPVDPRLPALYAEAESLVGIDEPTNDIIKWLTEGDGDLVQKLKVVSIWGPGGLGKTTLARQVYDKIGRQFDCQAFVSVSQKPDMRKVFRNILISVTGVEYIGIEAWDEERLINKLRDFINCKSFTNTYFHDKMQNRYFIVIDDIWSTTDWQTIRCVLLDSNIGSRVLATTQISYVAQSCCPADQDKVFEMKHLTAVHAEKLFLKRIFGSGDSCPPHLKEVSNGILRKCGGLPLAIITMASLLVNKPQTKEQWEKYRDSIVENDPIVNRMQKILSLSYAVLPHHLKTCLLYLSTFPEDCIIERDRLVRRWIAEGFIATESGCSLEEVGEDYFNELISRSLIQVVGIKYDDRDNTCRIHDMVLDLIVSKSIEENFITFIGYHNRVCGLQDKVRRLSLNFHHQEGRLFQLKYLRLSEVSISKLPEEIGELQQLETLELEHTKINGLPKSITRLKNLVFLRADYTSLPEGVGNMKALQKLSWIKVNTSAPSTTLHEMGSLTELRYLDINWCIGDMCSDMKSYTESFGSSIIKLCKHKLQYLRIRSEGSQGCSLGFLLNSWSCPPHLLQKFDMYTEYYFPRIPDWIASLSKVTFLDIKVNPVDEEAFRILGNLPSLITLWLWTKTVVCKRRFIIHNVGFKHLKEFYFGFWRIEMGPIKFEVGAMPKLQKFLFDIKAQGAGPPSGDFDIGIEHISSLRHLRIGIDCIDARPCEVEVTEAAVRNVTSVLPSNLQIEIERHRAGQMVKEKMGSTDHDGEQNRGIGCSVNSG

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0258500 SBH 0.000000 0.061899 1.297570
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g15500 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os11g0258500 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0009670 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0009550 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0009550 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0009380 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0009360 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0131200 RBH 0.0031945 0.006507 0.0037115
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0009450 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0136200 RBH 0 0 0.009659
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0009560 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0009550 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0009380 RBH 0.0 2.672516 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0009400 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0009530 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G009650 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0009450 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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