Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g13530 | OGI:11021920 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:7419636-7421009 | ||||||||
| Gene Symbol | OsSRP-LLS, OrysaZ2a | ||||||||||
| DNA seq | TCACTCTGAGCTGCTTGTTGGGTCAAGGACGTGGCCGGCGAAGAGCACCGCGCCCGACGTCTCCTCCACCACGAAGAACGCGAACGGATGGTCCGCGACGAAGTCCTCCGGGTAGCTCATGCTCAAGAGCCTGATCGTGCAGGCCGTGGACGCCGCCGCCTCCGTGCCTTCCTCGTTCACCTCCACGACCGCCCTGTGGAACACCTCCTCCACCACCAGCCCGCCGCCCCGCTGATCCACGCCCTCCGCCATGCCGGACAGGTCGGCCTCGCCGGCGTCGAAGGCGGCCGTCACCCCCATCCCCTGCAGAACCCCGTTGATCTGGCTGTAGAACGACACCTTGAACCTCGGCACCCTGAGGTCGCCGACCTCGCGACGCCGCGTCGGCCGGTGGTCGCGCAGGAAGGAGGACGACGACGACGACGCCGCCATCTTGTCGACGAGCGCCGGCAGGCCGTCGCGCTCGTCCGGAAGGAAGATGTACATCGACAGCCCTACGTTCTCGCCGCCGTAGTGCTCGAGGATGGCCCGAGTGATGCTACTGTTGGTGATAGTGTCGCCACCATCGCCATGGTTCTTCATGGTCCGGTGGTGGTACGGCAGCTTGAGCACCGTGAAGCCGTCGTGGAAGCCGATGTACTGATCCTCCCGGCTGCTCATGAACGGGACGTCGACGGAGCTGCCGTCGAGGCGGTGGAACTTGCCGGTGGTGGTGCTCGACCTGGGGAAGGGATTGGACCATTTGCCCTTGAAGTAGATGGCGTTCACGAGCACGAGGGCGGTGTCGACATGAACTGATCCATCTGGGAGGATCTCGGGGATGAGCTTGTTCGTCGCCTTGGACACCCACTTGTTGATCTTCTTTCTTGATCTCTTTGGCTGCATATGAAAGTTTTACATACCAAGATTGATCGAATTTACTACATATGTTGGTCGAAATTTCACAAATCGTCATATTGAAACCCTGGACTGACTGACCTGTCTTTGGAAGTTGGCGGCGCGCGTCACGGCCTTGTAGGTGCCGGCGGCGGCGGCGCGGTAGGCCGGCTTAAGCTCGAGCGTCTCGTCGTGCCAGACGCCGCAGGCGTCGGAGACGCGCGGCCCGCCGGACGCGGACTCGTCGGCGAGGCCGACCTCCACGGCGCGGCGTACGGACTCCTCGAGGTCGTCGAGCGACGCGGCGCCGAGCAGCGCGAGGAGCTCGTCCAGGGTGGTGCCCCGTGCCCCGGCCGCCACCAGCGCCAGCGCGGCGTACAGGGACGCCGGCGAGAAGACGAGGTTCTTGTTGCTGCTGACGCCGACGTCGGCGAGACGCTTCGCCAGGCGGAGCGCGAAGGCCGTCATGCCGCCGCAGTCGCCGGCGTTGTCTTCCAT
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| CDS seq | ATGGAAGACAACGCCGGCGACTGCGGCGGCATGACGGCCTTCGCGCTCCGCCTGGCGAAGCGTCTCGCCGACGTCGGCGTCAGCAGCAACAAGAACCTCGTCTTCTCGCCGGCGTCCCTGTACGCCGCGCTGGCGCTGGTGGCGGCCGGGGCACGGGGCACCACCCTGGACGAGCTCCTCGCGCTGCTCGGCGCCGCGTCGCTCGACGACCTCGAGGAGTCCGTACGCCGCGCCGTGGAGGTCGGCCTCGCCGACGAGTCCGCGTCCGGCGGGCCGCGCGTCTCCGACGCCTGCGGCGTCTGGCACGACGAGACGCTCGAGCTTAAGCCGGCCTACCGCGCCGCCGCCGCCGGCACCTACAAGGCCGTGACGCGCGCCGCCAACTTCCAAAGACAGCCAAAGAGATCAAGAAAGAAGATCAACAAGTGGGTGTCCAAGGCGACGAACAAGCTCATCCCCGAGATCCTCCCAGATGGATCAGTTCATGTCGACACCGCCCTCGTGCTCGTGAACGCCATCTACTTCAAGGGCAAATGGTCCAATCCCTTCCCCAGGTCGAGCACCACCACCGGCAAGTTCCACCGCCTCGACGGCAGCTCCGTCGACGTCCCGTTCATGAGCAGCCGGGAGGATCAGTACATCGGCTTCCACGACGGCTTCACGGTGCTCAAGCTGCCGTACCACCACCGGACCATGAAGAACCATGGCGATGGTGGCGACACTATCACCAACAGTAGCATCACTCGGGCCATCCTCGAGCACTACGGCGGCGAGAACGTAGGGCTGTCGATGTACATCTTCCTTCCGGACGAGCGCGACGGCCTGCCGGCGCTCGTCGACAAGATGGCGGCGTCGTCGTCGTCGTCCTCCTTCCTGCGCGACCACCGGCCGACGCGGCGTCGCGAGGTCGGCGACCTCAGGGTGCCGAGGTTCAAGGTGTCGTTCTACAGCCAGATCAACGGGGTTCTGCAGGGGATGGGGGTGACGGCCGCCTTCGACGCCGGCGAGGCCGACCTGTCCGGCATGGCGGAGGGCGTGGATCAGCGGGGCGGCGGGCTGGTGGTGGAGGAGGTGTTCCACAGGGCGGTCGTGGAGGTGAACGAGGAAGGCACGGAGGCGGCGGCGTCCACGGCCTGCACGATCAGGCTCTTGAGCATGAGCTACCCGGAGGACTTCGTCGCGGACCATCCGTTCGCGTTCTTCGTGGTGGAGGAGACGTCGGGCGCGGTGCTCTTCGCCGGCCACGTCCTTGACCCAACAAGCAGCTCAGAGTGA
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| Protein seq | MEDNAGDCGGMTAFALRLAKRLADVGVSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADESASGGPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNKLIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGSSVDVPFMSSREDQYIGFHDGFTVLKLPYHHRTMKNHGDGGDTITNSSITRAILEHYGGENVGLSMYIFLPDERDGLPALVDKMAASSSSSSFLRDHRPTRRREVGDLRVPRFKVSFYSQINGVLQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVVEVNEEGTEAAASTACTIRLLSMSYPEDFVADHPFAFFVVEETSGAVLFAGHVLDPTSSSE |
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| Function | Serpin-Z2A [UniProtKB/Swiss-Prot:Q53KS8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g13530 | LOC_Os11g13530.1 | Chr11 | 7419636 | 7421009 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAAGACAACGCCGGCGACTGCGGCGGCATGACGGCCTTCGCGCTCCGCCTGGCGAAGCGTCTCGCCGACGTCGGCGTCAGCAGCAACAAGAACCTCGTCTTCTCGCCGGCGTCCCTGTACGCCGCGCTGGCGCTGGTGGCGGCCGGGGCACGGGGCACCACCCTGGACGAGCTCCTCGCGCTGCTCGGCGCCGCGTCGCTCGACGACCTCGAGGAGTCCGTACGCCGCGCCGTGGAGGTCGGCCTCGCCGACGAGTCCGCGTCCGGCGGGCCGCGCGTCTCCGACGCCTGCGGCGTCTGGCACGACGAGACGCTCGAGCTTAAGCCGGCCTACCGCGCCGCCGCCGCCGGCACCTACAAGGCCGTGACGCGCGCCGCCAACTTCCAAAGACAGCCAAAGAGATCAAGAAAGAAGATCAACAAGTGGGTGTCCAAGGCGACGAACAAGCTCATCCCCGAGATCCTCCCAGATGGATCAGTTCATGTCGACACCGCCCTCGTGCTCGTGAACGCCATCTACTTCAAGGGCAAATGGTCCAATCCCTTCCCCAGGTCGAGCACCACCACCGGCAAGTTCCACCGCCTCGACGGCAGCTCCGTCGACGTCCCGTTCATGAGCAGCCGGGAGGATCAGTACATCGGCTTCCACGACGGCTTCACGGTGCTCAAGCTGCCGTACCACCACCGGACCATGAAGAACCATGGCGATGGTGGCGACACTATCACCAACAGTAGCATCACTCGGGCCATCCTCGAGCACTACGGCGGCGAGAACGTAGGGCTGTCGATGTACATCTTCCTTCCGGACGAGCGCGACGGCCTGCCGGCGCTCGTCGACAAGATGGCGGCGTCGTCGTCGTCGTCCTCCTTCCTGCGCGACCACCGGCCGACGCGGCGTCGCGAGGTCGGCGACCTCAGGGTGCCGAGGTTCAAGGTGTCGTTCTACAGCCAGATCAACGGGGTTCTGCAGGGGATGGGGGTGACGGCCGCCTTCGACGCCGGCGAGGCCGACCTGTCCGGCATGGCGGAGGGCGTGGATCAGCGGGGCGGCGGGCTGGTGGTGGAGGAGGTGTTCCACAGGGCGGTCGTGGAGGTGAACGAGGAAGGCACGGAGGCGGCGGCGTCCACGGCCTGCACGATCAGGCTCTTGAGCATGAGCTACCCGGAGGACTTCGTCGCGGACCATCCGTTCGCGTTCTTCGTGGTGGAGGAGACGTCGGGCGCGGTGCTCTTCGCCGGCCACGTCCTTGACCCAACAAGCAGCTCAGAGTGA
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| Protein seq | MEDNAGDCGGMTAFALRLAKRLADVGVSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADESASGGPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNKLIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGSSVDVPFMSSREDQYIGFHDGFTVLKLPYHHRTMKNHGDGGDTITNSSITRAILEHYGGENVGLSMYIFLPDERDGLPALVDKMAASSSSSSFLRDHRPTRRREVGDLRVPRFKVSFYSQINGVLQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVVEVNEEGTEAAASTACTIRLLSMSYPEDFVADHPFAFFVVEETSGAVLFAGHVLDPTSSSE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0239000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g13540 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0239000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008560 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008450 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008460 | SBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008290 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008400 | RBH | 0.0 | 0.0 | 0.219895 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0113800 | RBH | 0 | 0.0266935 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008430 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0117800 | SBH | 0.076129 | 0 | 0.0158405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008490 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008580 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008510 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008360 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008460 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008520 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008380 | SBH | 0.0 | 0.0 | 0.0 |
