Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0008360 | OGI:11021920 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:7455216-7460238 | ||||||||
| Gene Symbol | OsSRP-LLS, OrysaZ2a, OsSRP-FLC, OrysaZ2b, - | ||||||||||
| DNA seq | tcttgcgttgttactccaagcttgttgggtcaaggacgtggccagcgaagagcaccgcatccgacttctcctccaccacgaagaacgcgaacggatggtccgcgacgaagtccacaggagaggttaaagttaaacacaagagcttcatcgtgcaggccgtggccgccgccgcctccgtgccttcctcgttcacctccacgaccgccctgtgcatcaccttctccaccaccaccagctcgccgtcgatcatgccggataggtcgaccttgccgacgtcgaaggcggccccaatccccatccccttcagaacctcgttcatctcgctgtagaacgacaccttgaacctcggcaccctcaggtcgccgaccttgatccgccgtcgccccggccggtggtcgcgcaggaaggaggaggaggccgtgccggacgacgccgctgccatcttgtcgacgagcgccggcaggccgtcgcgcgcgtccggcaggaagatgtacatcgacaaccccacgttctcgccgtagtgtttgaggatggccggagtgatgtcaccaccatcgccatggttcttcatggtccggtggtacggcagcttgagcaccttgaagccgtcgtagaagccgatgtactgatcctcccggctgctcatgaacggagcgtcgacggagctgccgtcgaggcggtggaacttgccggtggtggttctctccctggggaagggattggaccatttgcccttgaagtagatggcgttgacgagcacgagggcggtgccgccatgaactgatccatctgggaggatctcgcggatgagcttgttcgtcgccttggacacccacttgttgatcttctttcttgaactctttggctgcatgtcaaatttacacaccccagatcgatcgaatttactacgaaatttcagaaatcgtcaaaccgaaataatatatatcgaaacctggactgacctgtctttggaagtcggcggcgcgcgtctcggcctggtaggtctcgacggcggcggcgcggtaggccggcttcagcgcgagcctctcgtcgtgccagacgccgcaggcgtaggagacgcgcggcccgccggactcggactcgtcggcgaggccgacctccacggcgcggcgtactgactcctcgaggtcgtcgaacgacgcggcgccgagcagcgcgacgagctcgtccagggtggtgccccgtgccccggacgccaccagcgccagcgcggcgtacagggacaccggcgagaagacgacgttcctgttgctgttgtcgccgtcgtcggtgagacgcttcgccaggcggagcgcgaacgccgtcaggccgccgcagttgccggcgtcgtcttccatggcgatgggatggcaatgcaaccgaaggtagatcgtgcaggacgtaaagccccaagggtcgttgtgaaacgtacgtacgtacaagttattactgtatataagtcggtgcgcatatatggcagatggaagttaattaagatatattttccccttaaatttgcagaatatggagaagataaactaccaaattaaccacgcataatttcccttttaccattgtagccgtgcgcctcatcaaaggatacaggctagatttgcagaatatggagaagatttaatgctgcgcttcgaagcacacgggccgagagtcgaaaagaaagccaccgtcatcgtggacagcaccaatatgatattgtgtcaccactgcacaACatcatattggtgccggctagaaatctcgtgtaggtgccagattcccaaccggcatcatgaaagaggtactgatgagaggggattttctgtgccgattgagaacaaaagcggctcaacttaattagatctgatgctttaaatccaccaaaggtaataaaatcgcaaaaaaaaaagagtcacaaaatcaacggcattccatcctaaatcattggaatcaacagtagtcaacttggtgcatgactgaattcattcgtgtatgagcaacaaaaaggaagaagtccgacgtggagaagtcctctgcctgctgtaagtggagaagtttgctcgctcgccggatccaaggagagagggacagaaccgctacgtccgaaagaagggagagagccgtgccgtcgagtggaccgaatcgataggatcggaccgccaccgagatcgtggaggccagaccccgacaccccgtaccactaacatccaagtgaccggatctgacaatccacgagctgacccaggtcaattaatacaattgtgcaacataaaaggtgttaaattatcaaattcattgctcggattcggacaaagagaggaagagggaggcgacttattgcattccccgcctattgcattccctctgccagtatgtgcaaatgaagtagagaagcagaggatggagatcaagttactggttagccacaatctcgtagtacatgatgcctgtaagaaaatctattatatgttctagcatgttgttcgtttgacatttacttattcggatttgctaactagctgtcgacagatttccgtggtctgcatcatgcgatttttttggtcgttagatattctttgagatgtgtgcttggatcggcccacatgtggcaaggtgacgtgggctctgtagggcagagtcaattgggccctgcaaggctgttcaattttgatttttgtgctgctcgcaggaccacctatatatttatcgacaaattttcttcaaaaaaataacaatgtaattatagtataatcgtagtgtaattacactgtaacttataTgtaattatactgtgacttgcatgtaactacagtgtaatttgtatgtaagtttcacgtaatttttcattagatctattataagatttgttgtggtgaggaagaaaaaatcgcagcacacatatatgtgaaaagatttgtttccacgacctccattttaccgaaataacatcttacagagagatttttgaaagttacatataagttacattgtagttacagtgtaattacatgcaagttacaatgtaattacactataattatactgtaattacatttatcaaatttttgggagaaaatttatcgataaatatagcaaaattgtttgttcaatgtggctaagatgatttttggcctgttaatgggtcttggtaaaagtttggttgtttaatctggctttagacaatttttggatctgttaatgggcctcgggtagttggcctcggtaaagggcaggcttgctatcccctttttttCTttttatatatatttttgtaattgtttttctgctgaaacatctgagccgtttggtgttgatcccgtggctcaaaaatctgcatgatacaaccccttattttctgtcgaatcataaatagacagtcattcttactgacactaccggaaagtaaagcatattttatggttactgaaaacattcattccattgatcgacgtagacgaggtgaccacaatatttgacgattttttttttacaaaaacattcgtggactaatatcttgacttgagctctaatcttgcgcccattatgtttttacttctaattgtttatttcgagcattgtcgaatgtagatgcaccggaattcagttggtggattttgagttagaagaagtagtgaccgtgtttcagttctttgaccgagctggagacgtttcgtgggatagcacaaattcaggatctagctgcttaatcggtcacagaataaatagaagaaaaacagaaaagctgcaagcatatgaaacatcagttttcgttagatactgttcaccatctgaaatccatcagttttcccgtgagcgagagggagtgatcaaatgcattttgcacttcagatgtagatgaaataaatgagcaatggttctcgtgtgtatgcctgtacatgttaccaaattgttaaaaaaaaaagtaggttaaattcgctctagattagaaTtttttttattttcagcgtgtcgctgactctaccattgaacatgccataacagctctattattctatagactattccattcgagatttgctccggcccaacaaaatcatttttgattgttagatctaataatatccatcctatgcagttagatccgatgatcagaaatggtttggtaccgtgaggtacaagtactttgaggtattttttttaaggaccggagcaaacctcattctattcatcttcatatcatcttgcattcttactgagagcttgttgggtcaaggacatgccccgcgaagatgtacatggacaacaacccgccgttgtacggcagctgagcacgttgaagccgtcgtagaagccgatgtactgatcctcccggctgcgcatgaaccggacgttgacggagctgccgtcgaggcggtggaacttgccggtggtggtgctctccctggggaagggatcggaccacttgcccttgaagtagatggtgttcacgagcaccagggtggtgaggcgatgagcttgttcgtcgccttggacacccactcgttgatcttctttcttgatttctttggctgcatatgaaaattttacataccaaggttgatcaaatttcagaaatcgtcaaaccgaaaaattgggagccgcttgaactgactgacctgtcttcggaagtttgcggcgcgcgtcacggccttgtaggtgccgccgtgccggcggcggcggcgcggtaggccggcttcagcgcgagcgtctcgtcgtgcaagacgccgcaggcgtaggagacgcgcggcccgccggacgcggacgactcgttggcgaggccgacctccacggcgcggtagacggactccgcgaggtcgtcgagcgacgatgcgccgagcagcgcgaggagctcgtggagggtggtgccctgtcccccggccgccaccagcgccagcgcggcgtacagggacaccagcgagaacacgaggtttctgttgttgttgacgtcgtcgccgttgtcggcgagacgcttcgccagacggaacgcgaaggccgtcatgccgtcgcagttgccggcggcgtcatccat
More
|
||||||||||
| CDS seq | atggatgacgccgccggcaactgcgacggcatgacggccttcgcgttccgtctggcgaagcgtctcgccgacaacggcgacgacgtcaacaacaacagaaacctcgtgttctcgctggtgtccctgtacgccgcgctggcgctggtggcggccgggggacagggcaccaccctccacgagctcctcgcgctgctcggcgcatcgtcgctcgacgacctcgcggagtccgtctaccgcgccgtggaggtcggcctcgccaacgagtcgtccgcgtccggcgggccgcgcgtctcctacgcctgcggcgtcttgcacgacgagacgctcgcgctgaagccggcctaccgcgccgccgccgccggcacggcggcacctacaaggccgtcagtcagttcaagcggctcccaatttttcgccaaagaaatcaagaaagaagatcaacgagtgggtgtccaaggcgacgaacaagctcatcgcctcaccaccctggtgctcgtgaacaccatctacttcaagggcaagtggtccgatcccttccccagggagagcaccaccaccggcaagttccaccgcctcgacggcagctccgtcaacgtccggttcatgcgcagccgggaggatcagtacatcggcttctacgacggcttcaacgtgctcagctgccgtacaacggcgggttgttgtccatacgacgccggcaactgcggcggcctgacggcgttcgcgctccgcctggcgaagcgtctcaccgacgacggcgacaacagcaacaggaacgtcgtcttctcgccggtgtccctgtacgccgcgctggcgctggtggcgtccggggcacggggcaccaccctggacgagctcgtcgcgctgctcggcgccgcgtcgttcgacgacctcgaggagtcagtacgccgcgccgtggaggtcggcctcgccgacgagtccgagtccggcgggccgcgcgtctcctacgcctgcggcgtctggcacgacgagaggctcgcgctgaagccggcctaccgcgccgccgccgtcgagacctaccaggccgagacgcgcgccgccgacttccaaagacagccaaagagttcaagaaagaagatcaacaagtgggtgtccaaggcgacgaacaagctcatccgcgagatcctcccagatggatcagttcatggcggcaccgccctcgtgctcgtcaacgccatctacttcaagggcaaatggtccaatcccttccccagggagagaaccaccaccggcaagttccaccgcctcgacggcagctccgtcgacgctccgttcatgagcagccgggaggatcagtacatcggcttctacgacggcttcaaggtgctcaagctgccgtaccaccggaccatgaagaaccatggcgatggtggtgacatcactccggccatcctcaaacactacggcgagaacgtggggttgtcgatgtacatcttcctgccggacgcgcgcgacggcctgccggcgctcgtcgacaagatggcagcggcgtcgtccggcacggcctcctcctccttcctgcgcgaccaccggccggggcgacggcggatcaaggtcggcgacctgagggtgccgaggttcaaggtgtcgttctacagcgagatgaacgaggttctgaaggggatggggattggggccgccttcgacgtcggcaaggtcgacctatccggcatgatcgacggcgagctggtggtggtggagaaggtgatgcacagggcggtcgtggaggtgaacgaggaaggcacggaggcggcggcggccacggcctgcacgatgaagctcttgtgtttaactttaacctctcctgtggacttcgtcgcggaccatccgttcgcgttcttcgtggtggaggagaagtcggatgcggtgctcttcgctggccacgtccttgacccaacaagcttggagtaa
More
|
||||||||||
| Protein seq | MDDAAGNCDGMTAFAFRLAKRLADNGDDVNNNRNLVFSLVSLYAALALVAAGGQGTTLHELLALLGASSLDDLAESVYRAVEVGLANESSASGGPRVSYACGVLHDETLALKPAYRAAAAGTAAPTRPSVSSSGSQFFAKEIKKEDQRVGVQGDEQAHRLTTLVLVNTIYFKGKWSDPFPRESTTTGKFHRLDGSSVNVRFMRSREDQYIGFYDGFNVLSCRTTAGCCPYDAGNCGGLTAFALRLAKRLTDDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASFDDLEESVRRAVEVGLADESESGGPRVSYACGVWHDERLALKPAYRAAAVETYQAETRAADFQRQPKSSRKKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFMSSREDQYIGFYDGFKVLKLPYHRTMKNHGDGGDITPAILKHYGENVGLSMYIFLPDARDGLPALVDKMAAASSGTASSSFLRDHRPGRRRIKVGDLRVPRFKVSFYSEMNEVLKGMGIGAAFDVGKVDLSGMIDGELVVVEKVMHRAVVEVNEEGTEAAAATACTMKLLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAGHVLDPTSLE |
||||||||||
| Function | Serpin-Z2B [UniProtKB/Swiss-Prot:Q53KS9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0008360 | OsLiXu_11g0008360.01 | Chr11 | 7455216 | 7460238 | - | NAM | ||
| CDS seq | atggatgacgccgccggcaactgcgacggcatgacggccttcgcgttccgtctggcgaagcgtctcgccgacaacggcgacgacgtcaacaacaacagaaacctcgtgttctcgctggtgtccctgtacgccgcgctggcgctggtggcggccgggggacagggcaccaccctccacgagctcctcgcgctgctcggcgcatcgtcgctcgacgacctcgcggagtccgtctaccgcgccgtggaggtcggcctcgccaacgagtcgtccgcgtccggcgggccgcgcgtctcctacgcctgcggcgtcttgcacgacgagacgctcgcgctgaagccggcctaccgcgccgccgccgccggcacggcggcacctacaaggccgtcagtcagttcaagcggctcccaatttttcgccaaagaaatcaagaaagaagatcaacgagtgggtgtccaaggcgacgaacaagctcatcgcctcaccaccctggtgctcgtgaacaccatctacttcaagggcaagtggtccgatcccttccccagggagagcaccaccaccggcaagttccaccgcctcgacggcagctccgtcaacgtccggttcatgcgcagccgggaggatcagtacatcggcttctacgacggcttcaacgtgctcagctgccgtacaacggcgggttgttgtccatacgacgccggcaactgcggcggcctgacggcgttcgcgctccgcctggcgaagcgtctcaccgacgacggcgacaacagcaacaggaacgtcgtcttctcgccggtgtccctgtacgccgcgctggcgctggtggcgtccggggcacggggcaccaccctggacgagctcgtcgcgctgctcggcgccgcgtcgttcgacgacctcgaggagtcagtacgccgcgccgtggaggtcggcctcgccgacgagtccgagtccggcgggccgcgcgtctcctacgcctgcggcgtctggcacgacgagaggctcgcgctgaagccggcctaccgcgccgccgccgtcgagacctaccaggccgagacgcgcgccgccgacttccaaagacagccaaagagttcaagaaagaagatcaacaagtgggtgtccaaggcgacgaacaagctcatccgcgagatcctcccagatggatcagttcatggcggcaccgccctcgtgctcgtcaacgccatctacttcaagggcaaatggtccaatcccttccccagggagagaaccaccaccggcaagttccaccgcctcgacggcagctccgtcgacgctccgttcatgagcagccgggaggatcagtacatcggcttctacgacggcttcaaggtgctcaagctgccgtaccaccggaccatgaagaaccatggcgatggtggtgacatcactccggccatcctcaaacactacggcgagaacgtggggttgtcgatgtacatcttcctgccggacgcgcgcgacggcctgccggcgctcgtcgacaagatggcagcggcgtcgtccggcacggcctcctcctccttcctgcgcgaccaccggccggggcgacggcggatcaaggtcggcgacctgagggtgccgaggttcaaggtgtcgttctacagcgagatgaacgaggttctgaaggggatggggattggggccgccttcgacgtcggcaaggtcgacctatccggcatgatcgacggcgagctggtggtggtggagaaggtgatgcacagggcggtcgtggaggtgaacgaggaaggcacggaggcggcggcggccacggcctgcacgatgaagctcttgtgtttaactttaacctctcctgtggacttcgtcgcggaccatccgttcgcgttcttcgtggtggaggagaagtcggatgcggtgctcttcgctggccacgtccttgacccaacaagcttggagtaa
More
|
|||||||
| Protein seq | MDDAAGNCDGMTAFAFRLAKRLADNGDDVNNNRNLVFSLVSLYAALALVAAGGQGTTLHELLALLGASSLDDLAESVYRAVEVGLANESSASGGPRVSYACGVLHDETLALKPAYRAAAAGTAAPTRPSVSSSGSQFFAKEIKKEDQRVGVQGDEQAHRLTTLVLVNTIYFKGKWSDPFPRESTTTGKFHRLDGSSVNVRFMRSREDQYIGFYDGFNVLSCRTTAGCCPYDAGNCGGLTAFALRLAKRLTDDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASFDDLEESVRRAVEVGLADESESGGPRVSYACGVWHDERLALKPAYRAAAVETYQAETRAADFQRQPKSSRKKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFMSSREDQYIGFYDGFKVLKLPYHRTMKNHGDGGDITPAILKHYGENVGLSMYIFLPDARDGLPALVDKMAAASSGTASSSFLRDHRPGRRRIKVGDLRVPRFKVSFYSEMNEVLKGMGIGAAFDVGKVDLSGMIDGELVVVEKVMHRAVVEVNEEGTEAAAATACTMKLLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAGHVLDPTSLE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0239200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g13540 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0239200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008560 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008450 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008460 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008310 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008400 | RBH | 0.0 | 0.0 | 0.219895 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0113900 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008430 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0117900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008490 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008510 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0065960 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008480 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008520 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008380 | RBH | 0.0 | 0.0 | 0.0 |
