Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g12300 | OGI:11020270 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:6872037-6873056 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGGAGGCAGTAATCCTTGCCATCTCAAAGATTGGTACCACTTTAGGAGAAGAAGCCACCAAGGCTGTTCTAGCAAAACTGTCTGAAAAGGTAACAAATTTGAAAAATCTGCCAAGGAATGTAACAAGAATAGAAAAGGAACTGAAGATGATGAACAATGTAATACAAGATTTGGGCACAGCAGATATCAGAAAAAATACCGTCAAGGGTTGGATTGCGGAGGTGCGCAAGCTGGCCTACCATGTTGAGGATGTAATGGATAAGTACTTGTATCATGCTCATCAAATGCAGGAAGATGGGAAAATGAAGAAGTTTGTGAAAGGAGCACAATATATCAAGATTTTTGATGAAATTGCTGACGAAATTGTCCGGATGGAAGAAGAGATCAAGCATGTTAAAGATCTAATGAAATGGTCTCTTTCGGCAGAGCTCATGAGTACAAATACACCTGATGATATTGAGAGACAAATATCTGGAGGCTGCCTGCCAGAATTTATTAAAGATGAAGACCTTGTGGGGGTTGAAGAAAATAGGAGAAAATTGACTGGATGGCTGTATTCCAATGAGCCGCATGGTACAGTGATAACAGTGTTCGGCATGGGTGGACTGGGAAAAACTACATTGGTAAAAAATGTGTACGACCGGGAAAAGGGAAACTTCCCTGCTCATGCTTGGATTGTTGTATCGCAGACCTACGATGTGGAAGAATTGCTGCGCACTCTACTTATGAAGGTTGCATACCGAGAGCAATCACCAGCTGCAAACATGAATAAAATGGATGTTTATGAGTTAACAGATAAAATAAAGAAAAAGTTAGAAGATAGCAAGTGCTTGATTGTACTGGATGATGTATGGGACCATGAAGCATACACTATGATGCGCAATGCATTCCAGAATCTCCAGGAAAGTCGGATTGTCATCACGACAAGGAAGGAAGATGTGGCAGCTCTTGCATCCTCAAAATATCGCCTTGAGCTCCAACCTTTAGGCAACACTGACTCATTCAATCTCTTCTGA
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| CDS seq | ATGGCGGAGGCAGTAATCCTTGCCATCTCAAAGATTGGTACCACTTTAGGAGAAGAAGCCACCAAGGCTGTTCTAGCAAAACTGTCTGAAAAGGTAACAAATTTGAAAAATCTGCCAAGGAATGTAACAAGAATAGAAAAGGAACTGAAGATGATGAACAATGTAATACAAGATTTGGGCACAGCAGATATCAGAAAAAATACCGTCAAGGGTTGGATTGCGGAGGTGCGCAAGCTGGCCTACCATGTTGAGGATGTAATGGATAAGTACTTGTATCATGCTCATCAAATGCAGGAAGATGGGAAAATGAAGAAGTTTGTGAAAGGAGCACAATATATCAAGATTTTTGATGAAATTGCTGACGAAATTGTCCGGATGGAAGAAGAGATCAAGCATGTTAAAGATCTAATGAAATGGTCTCTTTCGGCAGAGCTCATGAGTACAAATACACCTGATGATATTGAGAGACAAATATCTGGAGGCTGCCTGCCAGAATTTATTAAAGATGAAGACCTTGTGGGGGTTGAAGAAAATAGGAGAAAATTGACTGGATGGCTGTATTCCAATGAGCCGCATGGTACAGTGATAACAGTGTTCGGCATGGGTGGACTGGGAAAAACTACATTGGTAAAAAATGTGTACGACCGGGAAAAGGGAAACTTCCCTGCTCATGCTTGGATTGTTGTATCGCAGACCTACGATGTGGAAGAATTGCTGCGCACTCTACTTATGAAGGTTGCATACCGAGAGCAATCACCAGCTGCAAACATGAATAAAATGGATGTTTATGAGTTAACAGATAAAATAAAGAAAAAGTTAGAAGATAGCAAGTGCTTGATTGTACTGGATGATGTATGGGACCATGAAGCATACACTATGATGCGCAATGCATTCCAGAATCTCCAGGAAAGTCGGATTGTCATCACGACAAGGAAGGAAGATGTGGCAGCTCTTGCATCCTCAAAATATCGCCTTGAGCTCCAACCTTTAGGCAACACTGACTCATTCAATCTCTTCTGA
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| Protein seq | MAEAVILAISKIGTTLGEEATKAVLAKLSEKVTNLKNLPRNVTRIEKELKMMNNVIQDLGTADIRKNTVKGWIAEVRKLAYHVEDVMDKYLYHAHQMQEDGKMKKFVKGAQYIKIFDEIADEIVRMEEEIKHVKDLMKWSLSAELMSTNTPDDIERQISGGCLPEFIKDEDLVGVEENRRKLTGWLYSNEPHGTVITVFGMGGLGKTTLVKNVYDREKGNFPAHAWIVVSQTYDVEELLRTLLMKVAYREQSPAANMNKMDVYELTDKIKKKLEDSKCLIVLDDVWDHEAYTMMRNAFQNLQESRIVITTRKEDVAALASSKYRLELQPLGNTDSFNLF |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g12300 | LOC_Os11g12300.1 | Chr11 | 6872037 | 6873056 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGAGGCAGTAATCCTTGCCATCTCAAAGATTGGTACCACTTTAGGAGAAGAAGCCACCAAGGCTGTTCTAGCAAAACTGTCTGAAAAGGTAACAAATTTGAAAAATCTGCCAAGGAATGTAACAAGAATAGAAAAGGAACTGAAGATGATGAACAATGTAATACAAGATTTGGGCACAGCAGATATCAGAAAAAATACCGTCAAGGGTTGGATTGCGGAGGTGCGCAAGCTGGCCTACCATGTTGAGGATGTAATGGATAAGTACTTGTATCATGCTCATCAAATGCAGGAAGATGGGAAAATGAAGAAGTTTGTGAAAGGAGCACAATATATCAAGATTTTTGATGAAATTGCTGACGAAATTGTCCGGATGGAAGAAGAGATCAAGCATGTTAAAGATCTAATGAAATGGTCTCTTTCGGCAGAGCTCATGAGTACAAATACACCTGATGATATTGAGAGACAAATATCTGGAGGCTGCCTGCCAGAATTTATTAAAGATGAAGACCTTGTGGGGGTTGAAGAAAATAGGAGAAAATTGACTGGATGGCTGTATTCCAATGAGCCGCATGGTACAGTGATAACAGTGTTCGGCATGGGTGGACTGGGAAAAACTACATTGGTAAAAAATGTGTACGACCGGGAAAAGGGAAACTTCCCTGCTCATGCTTGGATTGTTGTATCGCAGACCTACGATGTGGAAGAATTGCTGCGCACTCTACTTATGAAGGTTGCATACCGAGAGCAATCACCAGCTGCAAACATGAATAAAATGGATGTTTATGAGTTAACAGATAAAATAAAGAAAAAGTTAGAAGATAGCAAGTGCTTGATTGTACTGGATGATGTATGGGACCATGAAGCATACACTATGATGCGCAATGCATTCCAGAATCTCCAGGAAAGTCGGATTGTCATCACGACAAGGAAGGAAGATGTGGCAGCTCTTGCATCCTCAAAATATCGCCTTGAGCTCCAACCTTTAGGCAACACTGACTCATTCAATCTCTTCTGA
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| Protein seq | MAEAVILAISKIGTTLGEEATKAVLAKLSEKVTNLKNLPRNVTRIEKELKMMNNVIQDLGTADIRKNTVKGWIAEVRKLAYHVEDVMDKYLYHAHQMQEDGKMKKFVKGAQYIKIFDEIADEIVRMEEEIKHVKDLMKWSLSAELMSTNTPDDIERQISGGCLPEFIKDEDLVGVEENRRKLTGWLYSNEPHGTVITVFGMGGLGKTTLVKNVYDREKGNFPAHAWIVVSQTYDVEELLRTLLMKVAYREQSPAANMNKMDVYELTDKIKKKLEDSKCLIVLDDVWDHEAYTMMRNAFQNLQESRIVITTRKEDVAALASSKYRLELQPLGNTDSFNLF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.206371 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0227700 | SBH | 0.000000 | 0.200607 | 0.322302 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g12740 | SBH | 1.046281 | 0.603305 | 1.050995 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0227700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008130 | SBH | 0.116122 | 24.598997 | 2.131475 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008040 | SBH | 0.198904 | 6.296239 | 0.434316 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007970 | SBH | 0.305399 | 8.817049 | 1.676870 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007850 | SBH | 0.093551 | 0.271765 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007920 | SBH | 2.486020 | 5.435768 | 3.408259 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0105900 | SBH | 0.109065 | 0.603869 | 0.012481 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007960 | SBH | 0.426523 | 0.831860 | 0.573374 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0112100 | SBH | 14.848664 | 5.7116715 | 1.4827995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008010 | SBH | 0.031650 | 0.052251 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008080 | SBH | 0.141007 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008060 | SBH | 1.234372 | 13.013433 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007880 | SBH | 0.437642 | 0.0 | 0.310380 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008040 | SBH | 0.041712 | 4.415436 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008080 | SBH | 0.107446 | 2.129446 | 0.213175 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007910 | SBH | 0.162102 | 7.456972 | 4.811376 |
