Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os11g06780 OGI:11010050 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr11:3314083-3316292
Gene Symbol RLCK311, OsRLCK311
DNA seq

ATGGACGGCGTCCTCCAGGCCCTCGTCGTCGCCGTCGCCGCCTCCGCCGCCATCCTCTTCCCCTGCCTCGCCATCGCCTTCTTCTGCCGCCACCGCCACCGCCACCGCGTCGTCGTCAAGCCCCGCTGCCGCTGCCTGCAGCCGTTGTCGTCGGCGGCGACGCTCCCGGTCACCGCGCCGAGCAGCAGGTCGTGCGAGTGCGTCTCGTCGTGGTCGTTCTACGGCGGCGGCGGCGACGCCGGCGACCGCTCGCTCAAGATGCTCTCGCTGGACGACCTCGCCGGCGCCACGGGCGGGTTCTCGCCGGACAACATCATCGGGGACGGGAGCTTCGGGTTCGTCTACCGCGCCGTGCTCCCCGACGGCGCCAGGGTCGCCGTCAAGCGCCTCTCCGCCGACCACGCCTCCGGCGGCGAGGGGAACCGCGAGTTCCGCGCCGAGCTGGAGGTGCTCGGCACGCTCAGCCACCCCAACCTGGCGCGCCTCCTCGGCTTCTGCGCCGCCGGCGCCGACCGCCTCCTCGTCTACGAGCTCCTCGAGCGCGGCAGCCTCGACGCGTGGCTGTACGGCGACGCCGCCGGCGCCGCCGGCCAGCTCCCCTGGCCGGCGCGCCTCCGCATCGCCCGCGGCGTCGCGGCGGCGCTCGCGTTCCTGCACCACGGCAACGAGACGGCCATCCTCCACCGCGACATCAAGGCCAGCAATGTCCTGCTCGACGAGGGCTTCGAGGCCAAGCTCGCCGACTTCGGCCTAGCCAGGATCGCCGCCGGCGGCGCCGCCGAGTCACACCTCAGCACGCAGGCCGCCGGCACCGCCGGGTAATTTAATCGATTGCACCCTTACTACAAGCCAAAATTGCTTCTATGGCCAATAGTTCATATACTAGTTGAATGCCTGTGCCTTCCAACGAATTTAAAAGAAAGAATCATAGTACCATTATTGTCTCAAATATTAATCCAAGAATTCCAACAGTATAAATGCTCCTTATAGAATTCGTTTTATTATTGTTCGTGTCACTGTGGCTCACTATTCACCACCACTATTTTTTTAGTGTTTCAGAGAAGTATATATAGCACTTCGATAACGATAGTGTTAACATAATGCTATTTTGAGAACGTTGGAAACTTTGGGTGCTATCAAAATGAATCAGGATCTTATGATTCTATGTAGTTATAAACTTTCGGTGCTAGAAAAATAATTTTGACTTATTAGAAACTATGGTTTGCAAATGTGGTTCGTCATCGAAAACCGATCCCTAGTGGTTTGGTCGATAACCGTGCAACAGTTATCGATGATAACCAGTTGAATTCAGATAATTTTTTTTCACATTGATCTCGATTTTGGTTTGATTTTTTATTGAACTTGACCGATTTATCGAGCCGTTTGTAAATATTTATTGGCTTGATAAGGTTGATAACCATGATAATTGAGCTGTTGCCGTCGCATTTCAATACCTTGCAATGAAGTACCCTTTTAGAATATGGTTTTTCATATATGCTTATTCTTTTTACAAATATTTGGCCCTGTTGACCAATATTTGATCAAATGGATTGTAGGTACATGGCACCAGAGTTACGTGCTGGCGTAGGCACGAGCGTAAAGGCAGATGTGTATAGCTTCGGCGTGCTACTGATGGAAATGGTTACCGGCCGGCGACCAAGCTGGCCGGTGAAGATCAACATGAAAGGGAAAGAGGTAGAGATGCTGAAATGGGCTAGGGATAAGGTAGACAAGGGCCAGGCATTGGAGATCCTGGACCGTCAGATGGGGATCCAATGGGAAGGGAGAGAGGCTGACCAAGATGAAATGATAGCGTATTTGGATGTGGCACGGCGTTGCACGGAGGAGAGCCCTAAGCACCGGCCATCCATGGAAGAAGTGGTTGAGATGCTCAACAAGATCTAAACCTGATTGAGAGCACATAGATTGAAATGCTTTAGATAGCTGTAGCCATGTGAAGTTCAATCAAACTTCCGGTTAGATTTTCTGTCTAGTTTGGGCTGATTATGATGCAAGATCATACTTTGGAATTGGGAATTAATTATAAACCATGGTGAGTATGAATGTTGAAGGGCAAACATGCCAATGCCTATCGTTGTATGGTAATGTTTGTAACTTGGTGATGAAAAGCTGATGTATACATGGGTAGCGAATAGCTTGCAGCATTGCAATAATGTATAAATATTGTGCGGATTTTGTCATCCGTTTAA

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CDS seq

ATGGACGGCGTCCTCCAGGCCCTCGTCGTCGCCGTCGCCGCCTCCGCCGCCATCCTCTTCCCCTGCCTCGCCATCGCCTTCTTCTGCCGCCACCGCCACCGCCACCGCGTCGTCGTCAAGCCCCGCTGCCGCTGCCTGCAGCCGTTGTCGTCGGCGGCGACGCTCCCGGTCACCGCGCCGAGCAGCAGGTCGTGCGAGTGCGTCTCGTCGTGGTCGTTCTACGGCGGCGGCGGCGACGCCGGCGACCGCTCGCTCAAGATGCTCTCGCTGGACGACCTCGCCGGCGCCACGGGCGGGTTCTCGCCGGACAACATCATCGGGGACGGGAGCTTCGGGTTCGTCTACCGCGCCGTGCTCCCCGACGGCGCCAGGGTCGCCGTCAAGCGCCTCTCCGCCGACCACGCCTCCGGCGGCGAGGGGAACCGCGAGTTCCGCGCCGAGCTGGAGGTGCTCGGCACGCTCAGCCACCCCAACCTGGCGCGCCTCCTCGGCTTCTGCGCCGCCGGCGCCGACCGCCTCCTCGTCTACGAGCTCCTCGAGCGCGGCAGCCTCGACGCGTGGCTGTACGGCGACGCCGCCGGCGCCGCCGGCCAGCTCCCCTGGCCGGCGCGCCTCCGCATCGCCCGCGGCGTCGCGGCGGCGCTCGCGTTCCTGCACCACGGCAACGAGACGGCCATCCTCCACCGCGACATCAAGGCCAGCAATGTCCTGCTCGACGAGGGCTTCGAGGCCAAGCTCGCCGACTTCGGCCTAGCCAGGATCGCCGCCGGCGGCGCCGCCGAGTCACACCTCAGCACGCAGGCCGCCGGCACCGCCGGGTACATGGCACCAGAGTTACGTGCTGGCGTAGGCACGAGCGTAAAGGCAGATGTGTATAGCTTCGGCGTGCTACTGATGGAAATGGTTACCGGCCGGCGACCAAGCTGGCCGGTGAAGATCAACATGAAAGGGAAAGAGGTAGAGATGCTGAAATGGGCTAGGGATAAGGTAGACAAGGGCCAGGCATTGGAGATCCTGGACCGTCAGATGGGGATCCAATGGGAAGGGAGAGAGGCTGACCAAGATGAAATGATAGCGTATTTGGATGTGGCACGGCGTTGCACGGAGGAGAGCCCTAAGCACCGGCCATCCATGGAAGAAGTGGTTGAGATGCTCAACAAGATCTAA

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Protein seq

MDGVLQALVVAVAASAAILFPCLAIAFFCRHRHRHRVVVKPRCRCLQPLSSAATLPVTAPSSRSCECVSSWSFYGGGGDAGDRSLKMLSLDDLAGATGGFSPDNIIGDGSFGFVYRAVLPDGARVAVKRLSADHASGGEGNREFRAELEVLGTLSHPNLARLLGFCAAGADRLLVYELLERGSLDAWLYGDAAGAAGQLPWPARLRIARGVAAALAFLHHGNETAILHRDIKASNVLLDEGFEAKLADFGLARIAAGGAAESHLSTQAAGTAGYMAPELRAGVGTSVKADVYSFGVLLMEMVTGRRPSWPVKINMKGKEVEMLKWARDKVDKGQALEILDRQMGIQWEGREADQDEMIAYLDVARRCTEESPKHRPSMEEVVEMLNKI

Function Leucine-rich repeat receptor protein kinase MSP1 [UniProtKB/Swiss-Prot:Q8RZV7]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os11g06780 LOC_Os11g06780.1 Chr11 3314083 3316292 + MSU_osa1r7
CDS seq

ATGGACGGCGTCCTCCAGGCCCTCGTCGTCGCCGTCGCCGCCTCCGCCGCCATCCTCTTCCCCTGCCTCGCCATCGCCTTCTTCTGCCGCCACCGCCACCGCCACCGCGTCGTCGTCAAGCCCCGCTGCCGCTGCCTGCAGCCGTTGTCGTCGGCGGCGACGCTCCCGGTCACCGCGCCGAGCAGCAGGTCGTGCGAGTGCGTCTCGTCGTGGTCGTTCTACGGCGGCGGCGGCGACGCCGGCGACCGCTCGCTCAAGATGCTCTCGCTGGACGACCTCGCCGGCGCCACGGGCGGGTTCTCGCCGGACAACATCATCGGGGACGGGAGCTTCGGGTTCGTCTACCGCGCCGTGCTCCCCGACGGCGCCAGGGTCGCCGTCAAGCGCCTCTCCGCCGACCACGCCTCCGGCGGCGAGGGGAACCGCGAGTTCCGCGCCGAGCTGGAGGTGCTCGGCACGCTCAGCCACCCCAACCTGGCGCGCCTCCTCGGCTTCTGCGCCGCCGGCGCCGACCGCCTCCTCGTCTACGAGCTCCTCGAGCGCGGCAGCCTCGACGCGTGGCTGTACGGCGACGCCGCCGGCGCCGCCGGCCAGCTCCCCTGGCCGGCGCGCCTCCGCATCGCCCGCGGCGTCGCGGCGGCGCTCGCGTTCCTGCACCACGGCAACGAGACGGCCATCCTCCACCGCGACATCAAGGCCAGCAATGTCCTGCTCGACGAGGGCTTCGAGGCCAAGCTCGCCGACTTCGGCCTAGCCAGGATCGCCGCCGGCGGCGCCGCCGAGTCACACCTCAGCACGCAGGCCGCCGGCACCGCCGGGTACATGGCACCAGAGTTACGTGCTGGCGTAGGCACGAGCGTAAAGGCAGATGTGTATAGCTTCGGCGTGCTACTGATGGAAATGGTTACCGGCCGGCGACCAAGCTGGCCGGTGAAGATCAACATGAAAGGGAAAGAGGTAGAGATGCTGAAATGGGCTAGGGATAAGGTAGACAAGGGCCAGGCATTGGAGATCCTGGACCGTCAGATGGGGATCCAATGGGAAGGGAGAGAGGCTGACCAAGATGAAATGATAGCGTATTTGGATGTGGCACGGCGTTGCACGGAGGAGAGCCCTAAGCACCGGCCATCCATGGAAGAAGTGGTTGAGATGCTCAACAAGATCTAA

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Protein seq

MDGVLQALVVAVAASAAILFPCLAIAFFCRHRHRHRVVVKPRCRCLQPLSSAATLPVTAPSSRSCECVSSWSFYGGGGDAGDRSLKMLSLDDLAGATGGFSPDNIIGDGSFGFVYRAVLPDGARVAVKRLSADHASGGEGNREFRAELEVLGTLSHPNLARLLGFCAAGADRLLVYELLERGSLDAWLYGDAAGAAGQLPWPARLRIARGVAAALAFLHHGNETAILHRDIKASNVLLDEGFEAKLADFGLARIAAGGAAESHLSTQAAGTAGYMAPELRAGVGTSVKADVYSFGVLLMEMVTGRRPSWPVKINMKGKEVEMLKWARDKVDKGQALEILDRQMGIQWEGREADQDEMIAYLDVARRCTEESPKHRPSMEEVVEMLNKI

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.287834 0.299261 0.156529

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0168600 RBH 1.200244 0.603528 1.680637
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os11g0168600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0004640 RBH 0.000000 0.000000 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0004690 RBH 0.000000 0.000000 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0004640 RBH 0.000000 1.524612 1.124487
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0004590 RBH 0.0 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0004490 RBH 0.0 0.0 0.768177
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0057700 RBH 0.622835 2.463428 0.987793
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0004570 RBH 0.000000 0.0 0.083726
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0058300 RBH 0.876626 3.945074 1.2178765
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0004500 RBH 0.000000 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0004570 RBH 0.123914 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0004570 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0004540 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0004580 RBH 0.000000 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G004620 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0004550 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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