Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
LOC_Os11g06780 | OGI:11010050 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:3314083-3316292 | ||||||||
Gene Symbol | RLCK311, OsRLCK311 | ||||||||||
DNA seq | ATGGACGGCGTCCTCCAGGCCCTCGTCGTCGCCGTCGCCGCCTCCGCCGCCATCCTCTTCCCCTGCCTCGCCATCGCCTTCTTCTGCCGCCACCGCCACCGCCACCGCGTCGTCGTCAAGCCCCGCTGCCGCTGCCTGCAGCCGTTGTCGTCGGCGGCGACGCTCCCGGTCACCGCGCCGAGCAGCAGGTCGTGCGAGTGCGTCTCGTCGTGGTCGTTCTACGGCGGCGGCGGCGACGCCGGCGACCGCTCGCTCAAGATGCTCTCGCTGGACGACCTCGCCGGCGCCACGGGCGGGTTCTCGCCGGACAACATCATCGGGGACGGGAGCTTCGGGTTCGTCTACCGCGCCGTGCTCCCCGACGGCGCCAGGGTCGCCGTCAAGCGCCTCTCCGCCGACCACGCCTCCGGCGGCGAGGGGAACCGCGAGTTCCGCGCCGAGCTGGAGGTGCTCGGCACGCTCAGCCACCCCAACCTGGCGCGCCTCCTCGGCTTCTGCGCCGCCGGCGCCGACCGCCTCCTCGTCTACGAGCTCCTCGAGCGCGGCAGCCTCGACGCGTGGCTGTACGGCGACGCCGCCGGCGCCGCCGGCCAGCTCCCCTGGCCGGCGCGCCTCCGCATCGCCCGCGGCGTCGCGGCGGCGCTCGCGTTCCTGCACCACGGCAACGAGACGGCCATCCTCCACCGCGACATCAAGGCCAGCAATGTCCTGCTCGACGAGGGCTTCGAGGCCAAGCTCGCCGACTTCGGCCTAGCCAGGATCGCCGCCGGCGGCGCCGCCGAGTCACACCTCAGCACGCAGGCCGCCGGCACCGCCGGGTAATTTAATCGATTGCACCCTTACTACAAGCCAAAATTGCTTCTATGGCCAATAGTTCATATACTAGTTGAATGCCTGTGCCTTCCAACGAATTTAAAAGAAAGAATCATAGTACCATTATTGTCTCAAATATTAATCCAAGAATTCCAACAGTATAAATGCTCCTTATAGAATTCGTTTTATTATTGTTCGTGTCACTGTGGCTCACTATTCACCACCACTATTTTTTTAGTGTTTCAGAGAAGTATATATAGCACTTCGATAACGATAGTGTTAACATAATGCTATTTTGAGAACGTTGGAAACTTTGGGTGCTATCAAAATGAATCAGGATCTTATGATTCTATGTAGTTATAAACTTTCGGTGCTAGAAAAATAATTTTGACTTATTAGAAACTATGGTTTGCAAATGTGGTTCGTCATCGAAAACCGATCCCTAGTGGTTTGGTCGATAACCGTGCAACAGTTATCGATGATAACCAGTTGAATTCAGATAATTTTTTTTCACATTGATCTCGATTTTGGTTTGATTTTTTATTGAACTTGACCGATTTATCGAGCCGTTTGTAAATATTTATTGGCTTGATAAGGTTGATAACCATGATAATTGAGCTGTTGCCGTCGCATTTCAATACCTTGCAATGAAGTACCCTTTTAGAATATGGTTTTTCATATATGCTTATTCTTTTTACAAATATTTGGCCCTGTTGACCAATATTTGATCAAATGGATTGTAGGTACATGGCACCAGAGTTACGTGCTGGCGTAGGCACGAGCGTAAAGGCAGATGTGTATAGCTTCGGCGTGCTACTGATGGAAATGGTTACCGGCCGGCGACCAAGCTGGCCGGTGAAGATCAACATGAAAGGGAAAGAGGTAGAGATGCTGAAATGGGCTAGGGATAAGGTAGACAAGGGCCAGGCATTGGAGATCCTGGACCGTCAGATGGGGATCCAATGGGAAGGGAGAGAGGCTGACCAAGATGAAATGATAGCGTATTTGGATGTGGCACGGCGTTGCACGGAGGAGAGCCCTAAGCACCGGCCATCCATGGAAGAAGTGGTTGAGATGCTCAACAAGATCTAAACCTGATTGAGAGCACATAGATTGAAATGCTTTAGATAGCTGTAGCCATGTGAAGTTCAATCAAACTTCCGGTTAGATTTTCTGTCTAGTTTGGGCTGATTATGATGCAAGATCATACTTTGGAATTGGGAATTAATTATAAACCATGGTGAGTATGAATGTTGAAGGGCAAACATGCCAATGCCTATCGTTGTATGGTAATGTTTGTAACTTGGTGATGAAAAGCTGATGTATACATGGGTAGCGAATAGCTTGCAGCATTGCAATAATGTATAAATATTGTGCGGATTTTGTCATCCGTTTAA
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CDS seq | ATGGACGGCGTCCTCCAGGCCCTCGTCGTCGCCGTCGCCGCCTCCGCCGCCATCCTCTTCCCCTGCCTCGCCATCGCCTTCTTCTGCCGCCACCGCCACCGCCACCGCGTCGTCGTCAAGCCCCGCTGCCGCTGCCTGCAGCCGTTGTCGTCGGCGGCGACGCTCCCGGTCACCGCGCCGAGCAGCAGGTCGTGCGAGTGCGTCTCGTCGTGGTCGTTCTACGGCGGCGGCGGCGACGCCGGCGACCGCTCGCTCAAGATGCTCTCGCTGGACGACCTCGCCGGCGCCACGGGCGGGTTCTCGCCGGACAACATCATCGGGGACGGGAGCTTCGGGTTCGTCTACCGCGCCGTGCTCCCCGACGGCGCCAGGGTCGCCGTCAAGCGCCTCTCCGCCGACCACGCCTCCGGCGGCGAGGGGAACCGCGAGTTCCGCGCCGAGCTGGAGGTGCTCGGCACGCTCAGCCACCCCAACCTGGCGCGCCTCCTCGGCTTCTGCGCCGCCGGCGCCGACCGCCTCCTCGTCTACGAGCTCCTCGAGCGCGGCAGCCTCGACGCGTGGCTGTACGGCGACGCCGCCGGCGCCGCCGGCCAGCTCCCCTGGCCGGCGCGCCTCCGCATCGCCCGCGGCGTCGCGGCGGCGCTCGCGTTCCTGCACCACGGCAACGAGACGGCCATCCTCCACCGCGACATCAAGGCCAGCAATGTCCTGCTCGACGAGGGCTTCGAGGCCAAGCTCGCCGACTTCGGCCTAGCCAGGATCGCCGCCGGCGGCGCCGCCGAGTCACACCTCAGCACGCAGGCCGCCGGCACCGCCGGGTACATGGCACCAGAGTTACGTGCTGGCGTAGGCACGAGCGTAAAGGCAGATGTGTATAGCTTCGGCGTGCTACTGATGGAAATGGTTACCGGCCGGCGACCAAGCTGGCCGGTGAAGATCAACATGAAAGGGAAAGAGGTAGAGATGCTGAAATGGGCTAGGGATAAGGTAGACAAGGGCCAGGCATTGGAGATCCTGGACCGTCAGATGGGGATCCAATGGGAAGGGAGAGAGGCTGACCAAGATGAAATGATAGCGTATTTGGATGTGGCACGGCGTTGCACGGAGGAGAGCCCTAAGCACCGGCCATCCATGGAAGAAGTGGTTGAGATGCTCAACAAGATCTAA
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Protein seq | MDGVLQALVVAVAASAAILFPCLAIAFFCRHRHRHRVVVKPRCRCLQPLSSAATLPVTAPSSRSCECVSSWSFYGGGGDAGDRSLKMLSLDDLAGATGGFSPDNIIGDGSFGFVYRAVLPDGARVAVKRLSADHASGGEGNREFRAELEVLGTLSHPNLARLLGFCAAGADRLLVYELLERGSLDAWLYGDAAGAAGQLPWPARLRIARGVAAALAFLHHGNETAILHRDIKASNVLLDEGFEAKLADFGLARIAAGGAAESHLSTQAAGTAGYMAPELRAGVGTSVKADVYSFGVLLMEMVTGRRPSWPVKINMKGKEVEMLKWARDKVDKGQALEILDRQMGIQWEGREADQDEMIAYLDVARRCTEESPKHRPSMEEVVEMLNKI |
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Function | Leucine-rich repeat receptor protein kinase MSP1 [UniProtKB/Swiss-Prot:Q8RZV7] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
LOC_Os11g06780 | LOC_Os11g06780.1 | Chr11 | 3314083 | 3316292 | + | MSU_osa1r7 | ||
CDS seq | ATGGACGGCGTCCTCCAGGCCCTCGTCGTCGCCGTCGCCGCCTCCGCCGCCATCCTCTTCCCCTGCCTCGCCATCGCCTTCTTCTGCCGCCACCGCCACCGCCACCGCGTCGTCGTCAAGCCCCGCTGCCGCTGCCTGCAGCCGTTGTCGTCGGCGGCGACGCTCCCGGTCACCGCGCCGAGCAGCAGGTCGTGCGAGTGCGTCTCGTCGTGGTCGTTCTACGGCGGCGGCGGCGACGCCGGCGACCGCTCGCTCAAGATGCTCTCGCTGGACGACCTCGCCGGCGCCACGGGCGGGTTCTCGCCGGACAACATCATCGGGGACGGGAGCTTCGGGTTCGTCTACCGCGCCGTGCTCCCCGACGGCGCCAGGGTCGCCGTCAAGCGCCTCTCCGCCGACCACGCCTCCGGCGGCGAGGGGAACCGCGAGTTCCGCGCCGAGCTGGAGGTGCTCGGCACGCTCAGCCACCCCAACCTGGCGCGCCTCCTCGGCTTCTGCGCCGCCGGCGCCGACCGCCTCCTCGTCTACGAGCTCCTCGAGCGCGGCAGCCTCGACGCGTGGCTGTACGGCGACGCCGCCGGCGCCGCCGGCCAGCTCCCCTGGCCGGCGCGCCTCCGCATCGCCCGCGGCGTCGCGGCGGCGCTCGCGTTCCTGCACCACGGCAACGAGACGGCCATCCTCCACCGCGACATCAAGGCCAGCAATGTCCTGCTCGACGAGGGCTTCGAGGCCAAGCTCGCCGACTTCGGCCTAGCCAGGATCGCCGCCGGCGGCGCCGCCGAGTCACACCTCAGCACGCAGGCCGCCGGCACCGCCGGGTACATGGCACCAGAGTTACGTGCTGGCGTAGGCACGAGCGTAAAGGCAGATGTGTATAGCTTCGGCGTGCTACTGATGGAAATGGTTACCGGCCGGCGACCAAGCTGGCCGGTGAAGATCAACATGAAAGGGAAAGAGGTAGAGATGCTGAAATGGGCTAGGGATAAGGTAGACAAGGGCCAGGCATTGGAGATCCTGGACCGTCAGATGGGGATCCAATGGGAAGGGAGAGAGGCTGACCAAGATGAAATGATAGCGTATTTGGATGTGGCACGGCGTTGCACGGAGGAGAGCCCTAAGCACCGGCCATCCATGGAAGAAGTGGTTGAGATGCTCAACAAGATCTAA
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Protein seq | MDGVLQALVVAVAASAAILFPCLAIAFFCRHRHRHRVVVKPRCRCLQPLSSAATLPVTAPSSRSCECVSSWSFYGGGGDAGDRSLKMLSLDDLAGATGGFSPDNIIGDGSFGFVYRAVLPDGARVAVKRLSADHASGGEGNREFRAELEVLGTLSHPNLARLLGFCAAGADRLLVYELLERGSLDAWLYGDAAGAAGQLPWPARLRIARGVAAALAFLHHGNETAILHRDIKASNVLLDEGFEAKLADFGLARIAAGGAAESHLSTQAAGTAGYMAPELRAGVGTSVKADVYSFGVLLMEMVTGRRPSWPVKINMKGKEVEMLKWARDKVDKGQALEILDRQMGIQWEGREADQDEMIAYLDVARRCTEESPKHRPSMEEVVEMLNKI
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.287834 | 0.299261 | 0.156529 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0168600 | RBH | 1.200244 | 0.603528 | 1.680637 |
Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | RAP-db | Os11g0168600 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004640 | RBH | 0.000000 | 0.000000 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004690 | RBH | 0.000000 | 0.000000 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004640 | RBH | 0.000000 | 1.524612 | 1.124487 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004590 | RBH | 0.0 | 0.000000 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004490 | RBH | 0.0 | 0.0 | 0.768177 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0057700 | RBH | 0.622835 | 2.463428 | 0.987793 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004570 | RBH | 0.000000 | 0.0 | 0.083726 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0058300 | RBH | 0.876626 | 3.945074 | 1.2178765 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004500 | RBH | 0.000000 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004570 | RBH | 0.123914 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004570 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004540 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004580 | RBH | 0.000000 | 0.000000 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004620 | RBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004550 | RBH | 0.0 | 0.0 | 0.0 |